BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492696
Length=1183
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21790.1 | Symbols: TOM1, ATTOM1 | tobamovirus multiplicatio... 1679 0.0
> AT4G21790.1 | Symbols: TOM1, ATTOM1 | tobamovirus multiplication
1 | chr4:11569765-11572549 FORWARD LENGTH=1421
Length=1421
Score = 1679 bits (909), Expect = 0.0
Identities = 1086/1164 (93%), Gaps = 42/1164 (4%)
Strand=Plus/Plus
Query 53 CCTGGAGGAGAGAATGAGGGATTCGGGTCTGATGATGCCGGCGGAGATTGCTGGATTTTT 112
||||||||||||||||| |||||||||||| |||||||||||||||||||||||| || |
Sbjct 147 CCTGGAGGAGAGAATGACGGATTCGGGTCTAATGATGCCGGCGGAGATTGCTGGAATTCT 206
Query 113 AACGACGGCGATTACGAGTTGGTGGGATGATGTTAATGAGTCAACTCAGTGGCAAGATGG 172
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 AACCACGGCGATTACGAGTTGGTGGGATGATGTTAATGAGTCAACTCAGTGGCAAGATGG 266
Query 173 GATCTTTTTCGCTCTTTGTGGTGCTTATGCTCTTGTTTCCGCCGTTGCTCTTGTTCAACT 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 GATCTTTTTCGCTCTTTGTGGTGCTTATGCTCTTGTTTCCGCCGTTGCTCTTGTTCAACT 326
Query 233 GATAAGGATCCAAATGAGAGTGCCTGAGTATGGTTGGACCACTCAGAAGGTGTTTCATCT 292
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 327 GATAAGGATCCAAATGAGAGTGCCTGAGTATGGTTGGACTACTCAGAAGGTGTTTCATCT 386
Query 293 TATGAACTTTGTCGTCAATGGAGTTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATT 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 TATGAACTTTGTCGTCAATGGAGTTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATT 446
Query 353 TCTTGTGCATCCCAAGGCTCTTTGCTGGGTACTATTGGATCTTCCAGGCCTTCTCTTTTT 412
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 447 TCTTGTTCATCCCAAGGCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCTTCTCTTTTT 506
Query 413 CTCGGCATACACGCTGCTTGTGCTGTTCTGGGCAGAGATATATCACCAGGCAAGAAGCTT 472
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 507 CTCGGCATACACGCTGCTTGTGCTGTTCTGGGCAGAGATATATCACCAGGCTAGAAGCTT 566
Query 473 GCCAACGGATAAGCTGCGGATAACCTATATTTCCGTCAACGTGGCTGTATATTTGGCTCA 532
|| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 567 ACCTACAGATAAGCTGCGGATAACCTATATTTCTGTCAACGTGGCTGTATATTTGGCTCA 626
Query 533 GATTGGTATCTGGGCATACATCTGGGTAAATGATAACAGCACTGTGGAGTTAGTTGGAAA 592
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 627 GATTGGTATCTGGGCATACATCTGGGTACATGATAACAGCACTGTGGAGTTAGTTGGAAA 686
Query 593 GATATTTATCGCAGTTGTATCTTTCATCGCCGCATTAGGCTTCTTGCTGTACGGAGGAAG 652
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 687 GATATTTATCGCAGTTGTGTCTTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGAAG 746
Query 653 GTTGTTTTTCATGCTTAGAAGGTTCCCTATCGAGTCAAAAGGAAGAAGAAAGAAACTCCA 712
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 747 ATTGTTTTTCATGCTAAGAAGGTTCCCTATCGAGTCAAAAGGAAGAAGGAAGAAACTCCA 806
Query 713 CGAGGTTGGATCTGTGACAGCGATATGCTTCACCTGCTTTCTCATAAGATGCGTTGTGGT 772
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 807 CGAGGTTGGATCTGTGACAGCTATATGCTTCACCTGCTTCCTCATAAGATGCGTTGTGGT 866
Query 773 GGCTGTATCAGCTTTTGACAAGGATTTAACGCTTGATGTTCTTGATCATCCGGTTCTGAA 832
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 867 GGCTGTATCAGCTTTTGACAAGGATTTAACACTTGATGTTCTTGATCATCCGGTTCTGAA 926
Query 833 CTTAATCTACTATATGGTGGTTGAAGTACTTCCATCGGCACTAGTCCTCTTCATTCTGCG 892
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 927 CTTAATCTACTATATGGTGGTAGAAGTACTTCCATCGGCACTAGTCCTCTTCATTCTCCG 986
Query 893 TAAGCTACCTCCAAAGAGAGTATCAGCTCAATACCATCCGATCCAGTAGAAACGGT-G-- 949
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 987 AAAGCTACCTCCAAAGAGAGTATCAGCTCAATACCATCCGATCCAGTAGAAACCTTTGTC 1046
Query 950 A--G-----TCT-----G---A-T--GATG-T-TT-AAGAGAAGAGTGAAGAT-AAAAA- 986
| | ||| | | | |||| | || ||||||||||| ||||| |||||
Sbjct 1047 ACTGAACCATCTCACACGGTGAGTATGATGCTGTTTAAGAGAAGAGTAAAGATTAAAAAA 1106
Query 987 ----TTGTGGCATTAAATCAAAGGTGAAGAAGAAATCGGTGTGGAAATGTGGAATCTGCG 1042
||| |||| |||| ||||||||||||||||||||||||||| | |||||
Sbjct 1107 AAAATTGGGGCAAAAAATGAAAGGTGAAGAAGAAATCGGTGTGGAA-T-------CTGCG 1158
Query 1043 TGAGTTTTTGGAATGCACGATCATACAA-TGATTTTACAGCTTT-AGTTGTTGTAGCCCG 1100
||||||||||||||||||| ||||| || ||||||||||||||| |||||||||||||||
Sbjct 1159 TGAGTTTTTGGAATGCACGTTCATATAAATGATTTTACAGCTTTTAGTTGTTGTAGCCCG 1218
Query 1101 CCGTGACTTTTGGTTTGGTAGTTTATGTCTGTTTAAATTATAAAT-GCTCTTCTTCTACT 1159
||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 1219 CCGTGACTTTTGGTTTGGTAGTTTATGTCTGTTAAAATTATAAATTGCTCTTCTGCTACT 1278
Query 1160 TTGAAAAAATCTGGTCAGTAGTAC 1183
|||||||| |||||||||||||||
Sbjct 1279 TTGAAAAA-TCTGGTCAGTAGTAC 1301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58082030565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5