BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492697
Length=469
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21780.1 | Symbols: | unknown protein; Has 30201 Blast hits... 556 5e-158
> AT4G21780.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:11567130-11567699
FORWARD LENGTH=570
Length=570
Score = 556 bits (301), Expect = 5e-158
Identities = 426/484 (88%), Gaps = 18/484 (4%)
Strand=Plus/Plus
Query 1 ATGGCTGCTCCAATCGCTATAGGAACACGAGGAACTATCGGATCGCTTGTACGTAAAGAA 60
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 84 ATGGCTGCTCCAATCGCCATAGGAACACGAGGAACCATCGGATCGCTTGTACGTAAAGAA 143
Query 61 ATCGACTACTTCAAAAACTTCACTACATGTCATCCTCAGTTTGATCCACGGAGAGGTAAT 120
||||||||||||||||||||| ||||||||||||| || || |||||||||||||| |||
Sbjct 144 ATCGACTACTTCAAAAACTTCTCTACATGTCATCCCCAATTCGATCCACGGAGAGGCAAT 203
Query 121 TCTGAAGAAAACACCGACACTTTTCAACAAAGAAGAGAACGGTCATCATCAAGGCTAAGT 180
|| |||||||||| | || ||| || | | |||||| |||||||||||| || | ||
Sbjct 204 TCGGAAGAAAACAAAAATACATTT-AA-ACA-AAGAGATCGGTCATCATCACGGTTGGGT 260
Query 181 TCTTGGTTCTCTAAAACTAATTGGAGAAAGAAGAAGCGGCAGACTCGTGGTGGCGCTGGC 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 261 TCTTGGTTCTCTAAAACTAAATGGAGAAAGAAGAAGCGGCAGACTCGTGGTGGCGGTGGC 320
Query 241 AAGTTTTTGCCGAGTATGTGCGCGGCTGTGGAGGTTTCCGGTGAGAATCGAGTTCCGGGT 300
|||||||| |||||||||||| |||| |||||||||||||| ||||||||||||||||||
Sbjct 321 AAGTTTTTTCCGAGTATGTGCTCGGCGGTGGAGGTTTCCGGCGAGAATCGAGTTCCGGGT 380
Query 301 TTCAACTATAGGATCTTGAAGAGTGATCATGAGAAGGGCTTGCGTGTGTAGAGAGTAGTA 360
|||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||
Sbjct 381 TTCAACTATAGGATCTTGAAGAGTGATCATCAGAAGGGCTTGCGTGTGTAGAAAGGAGTC 440
Query 361 ATTATTTATGTGG-----G-TAAAGACAATGAAATCTTCATAAACTTTTTCAAATTTAAA 414
|| |||||||||| | |||||||||||| |||| |||| | |||||||||||||||
Sbjct 441 ATCATTTATGTGGATTACGGTAAAGACAATGAGATCTACATACAGTTTTTCAAATTTAAA 500
Query 415 TTA-TGTGTGAATGTGTTACATA-TTACAA-T------GTCAATGGGCATATTTTCGAAC 465
|| ||| | | ||||||||||| |||||| | ||||||| |||||| |||||||
Sbjct 501 ATAATGTCTCATTGTGTTACATACTTACAAGTTACAATGTCAATGAGCATATATTCGAAC 560
Query 466 TTTT 469
||||
Sbjct 561 TTTT 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22303961268
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5