BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492699
Length=1713
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21760.1 | Symbols: BGLU47 | beta-glucosidase 47 | chr4:1156... 1849 0.0
AT4G21770.1 | Symbols: | Pseudouridine synthase family protein... 315 1e-84
> AT4G21760.1 | Symbols: BGLU47 | beta-glucosidase 47 | chr4:11561229-11563950
FORWARD LENGTH=1687
Length=1687
Score = 1849 bits (1001), Expect = 0.0
Identities = 1142/1210 (94%), Gaps = 9/1210 (1%)
Strand=Plus/Plus
Query 1 AAAAATCTATAGTCTCTGAAATAATGGAGACCAAATCATCAATGTACATTTCTCAGTTTC 60
||||||||||||| | ||||||||||||||| || |||||||||||| |||||||||| |
Sbjct 5 AAAAATCTATAGTTTATGAAATAATGGAGACTAAGTCATCAATGTACCTTTCTCAGTTCC 64
Query 61 GACTTTGGCTCCTCTGCTTCATCATCATAACCTTGGTCTCATTGTCATCGTCATCAAGAT 120
|||||||| |||||||||||||||| ||||||||||||||||||||| ||| ||||||
Sbjct 65 GACTTTGG---CTCTGCTTCATCATCACAACCTTGGTCTCATTGTCATCTTCAACAAGAT 121
Query 121 GGTATGATGATCATATCTCATTGAGAA-AGATTAACGCAGAAGAAAATTTCCATTTCCCA 179
|||||||||||||||||||||||| || ||||| |||||||||||| ||||||||| |||
Sbjct 122 GGTATGATGATCATATCTCATTGA-AAGAGATTCACGCAGAAGAAACTTTCCATTTTCCA 180
Query 180 AAAAACTTTCTCTTTGGCACAGCTTCTTCTGCTTACCAGTATGAAGGAGCTTACCTAACC 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 AAAAACTTTCTCTTTGGCACAGCTTCTTCTGCTTACCAGTATGAAGGAGCTTACTTAACT 240
Query 240 GACGGCAAAACCCTAAGCAACTGGGACGTTTTCACAAACATCTCTGGAAAAATTGCGGAT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GACGGCAAAACCCTAAGCAACTGGGACGTTTTCACAAACATCTCTGGAAAAATTGCGGAT 300
Query 300 GGAAGCCATGGGAAAGTCGCTGTTGATCATTACCATCGATATCCGGGAGATTTGGATCTC 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGAAGCCATGGGAAAGTCGCTGTTGATCATTACCATCGATATCCGGGAGATTTGGATCTG 360
Query 360 ATGGAAGATCTTGGAGTTAATAGCTATCGACTTTCTTTGTCATGGGCTCGGATTCTTCCA 419
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 ATGGAAGATCTTGGAGTTAATAGCTATCGACTTTCTTTATCATGGGCTCGGATTCTTCCA 420
Query 420 AAGGGCAGATTTGGAGATGTGAACATGGGTGGTATCGATCATTACAACAGAATGATCAAT 479
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGGGAAGATTTGGAGATGTGAACATGGGTGGTATCGATCATTACAACAGAATGATCAAT 480
Query 480 GATATTCTCAAGAGAGGGATCGAGCCATTTGTCACGTTGACACATTACGACATTCCTCAA 539
||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GATATTCTCAAAACAGGAATCGAGCCATTTGTCACGTTGACACATTACGACATTCCTCAA 540
Query 540 GAACTCGAATCTAGATACGGAAGTTGGCTAAATCCCCAAATCCGGGAAGATTTCGAACAT 599
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 GAACTCGAATATAGATACGGAAGTTGGCTAAACCCCCAAATCCGGGAAGATTTCGAACAT 600
Query 600 TACGCAAATATTTGCTTCCGATACTTTGGGGACAGAGTTAAATTTTGGGCTACGTTCAAC 659
||||||||||||||||||||| ||||||| ||||| |||||||| ||| |||| ||||||
Sbjct 601 TACGCAAATATTTGCTTCCGACACTTTGGAGACAGGGTTAAATTCTGGTCTACTTTCAAC 660
Query 660 GAACCAAACGTTCAAGTTATTTTGGGTTACCGGACAGGAACTTACCCGCCTTCACGTTGT 719
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAACCAAACGTTCAAGTGATTTTGGGTTACCGGACAGGAACTTACCCGCCTTCACGTTGT 720
Query 720 TCCAATACTTTTGGAAACTGCTCTTGTGGTGATTCTTACATAGAGCCACTCGTTGCCGCT 779
||||| |||||||||||||||| ||||| |||||||||||||||||||| || ||||||
Sbjct 721 TCCAAGCCTTTTGGAAACTGCTCGTGTGGCGATTCTTACATAGAGCCACTTGTAGCCGCT 780
Query 780 CACAACATTATACGTTCACATGTAGCCGCCGT-AACCTTATACCGGACAAAATTTCAGGA 838
||||||||||| | ||||||| |||||||||| ||| |||||||| ||||||||||||||
Sbjct 781 CACAACATTATCCTTTCACATTTAGCCGCCGTCAAC-TTATACCGTACAAAATTTCAGGA 839
Query 839 ACAACAAAGTGGAAAGATCGGTATTGTTATGAACACGATCTGGTTTGAACCGGTTAGTGA 898
||||||||| ||| |||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 840 ACAACAAAGAGGACAGATCGGTATTGTTATGAACACAATCTGGTTTGAACCGATTAGTGA 899
Query 899 TTCTTTAGCAGATAGATTAGCTGCTGAGAGAGCTCAAGCTTTCTACTTGACTTGGTTCTT 958
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 900 TTCTTTAGCAGATAGATTAGCTGCTGACAGAGCTCAAGCTTTCTATTTGACTTGGTTCTT 959
Query 959 GGATCCAGTTGTGTTTGGAAGATATCCAAGAGAAATGCGAGAAATTCTCGGCGAAGATCT 1018
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 960 GGATCCGGTTGTGTTTGGAAGATATCCAAGAGAAATGCGAGAAATTCTTGGCGATGATCT 1019
Query 1019 TCCTGAATTCAC-AACGGATGATCTTAAAAGCTCCAAGAACACATTAGACTTCATTGGGA 1077
|||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1020 TCCTGAATTCACGAA-GGATGATCTTAAAAGCTCCAAGAATGCATTAGACTTCATTGGGA 1078
Query 1078 TTAATCAGTACACAAGCAGATACGCGGAAGATTGTCTGGATTCTGTATGTGAACCAGGCA 1137
|||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||
Sbjct 1079 TTAATCAGTACACAAGCAGATACGCGAAAGATTGTCTGCATTCCGTATGTGAACCGGGCA 1138
Query 1138 AAGGAGGTTCGAGAGCAGAAGGTTTTGTCTATGCAAAAGCTCTTAAAGACGGTTTACCTT 1197
|||||||||||||||| |||||||||||||||||||| || || ||||||||||||| ||
Sbjct 1139 AAGGAGGTTCGAGAGCTGAAGGTTTTGTCTATGCAAACGCCCTCAAAGACGGTTTACGTT 1198
Query 1198 TAGGAGAACC 1207
||||||||||
Sbjct 1199 TAGGAGAACC 1208
Score = 721 bits (390), Expect = 0.0
Identities = 447/474 (94%), Gaps = 6/474 (1%)
Strand=Plus/Plus
Query 1241 AGGAATGGAGGAGATGTTGATGTATGCAACAAAGCGATACAAAAACATTCCATTGTATGT 1300
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1212 AGGAATGGAGGAGATGTTGATGTATGCAACAGAGCGATACAAAAACATTACATTGTATGT 1271
Query 1301 AACAGAAAACGGTTTTGGCGAGAACAATACCGGAGTATTGTTAAACGACTATCGGAGATT 1360
|||||||||||||||||| ||||||||||||||||||||||||||||| || | |||| |
Sbjct 1272 AACAGAAAACGGTTTTGGTGAGAACAATACCGGAGTATTGTTAAACGATTACCAGAGAGT 1331
Query 1361 GAAGTTCATGAGTAACTACTTAGATGCACTCAAAAGAGCAATGAGGAAAGGAGCAGATGT 1420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 GAAGTTCATGAGCAACTACTTAGATGCACTCAAAAGAGCAATGAGGAAAGGAGCAGATGT 1391
Query 1421 AAGAGGATACTTCGCCTGGTCTTTACTAGACAACTTCGAGTGGATATCTGGTTATACCAT 1480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1392 AAGAGGATACTTCGCCTGGTCTTTACTAGACAACTTCGAGTGGATATCCGGTTATACCAT 1451
Query 1481 AAGGTTCGGTATGTACCATGTCGATTTCAATACTCAAGAGAGAACCCCGAGACTATCAGC 1540
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1452 AAGGTTCGGTATGTACCATGTCGATTTCAGTACTCAAGAGAGAACCCCGAGACTGTCAGC 1511
Query 1541 TTCTTGGTACGAAAACTTCATTTTCCAACACAGAGCTCAATCCAAAGATGATTGATGCCT 1600
|||||||||| |||||||||| ||||| |||||||||| ||| ||||||||||| |||||
Sbjct 1512 TTCTTGGTACAAAAACTTCATCTTCCAGCACAGAGCTCTATCAAAAGATGATTGGTGCCT 1571
Query 1601 GAAACAAAAGGAAGACACAAATTTATATCTTTCTTATTTGATTCTTCCATAAAGTAGGAG 1660
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1572 GAAACAAAAGGAAGACACAAATTT----CTTTCTTATTTGATTCTTCCATTAAGTAGGAG 1627
Query 1661 GGTAATGTAATTGTAAGCTGTTTTCTA-ATAATCAGTTCCAATAAACAAGACAT 1713
|||||||||| |||||||||||| || | ||||||||||||||||||||||||
Sbjct 1628 AGTAATGTAATAGTAAGCTGTTTTGTAGA-AATCAGTTCCAATAAACAAGACAT 1680
> AT4G21770.1 | Symbols: | Pseudouridine synthase family protein
| chr4:11563517-11566357 REVERSE LENGTH=1801
Length=1801
Score = 315 bits (170), Expect = 1e-84
Identities = 191/201 (95%), Gaps = 1/201 (0%)
Strand=Plus/Minus
Query 1400 AATGAGGAAAGGAGCAGATGTAAGAGGATACTTCGCCTGGTCTTTACTAGACAACTTCGA 1459
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1683 AAT-AGGAAAGGAGCAGATGTAAGAGGATACTTCGCCTGGTCTTTACTAGACAACTTCGA 1625
Query 1460 GTGGATATCTGGTTATACCATAAGGTTCGGTATGTACCATGTCGATTTCAATACTCAAGA 1519
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1624 GTGGATATCCGGTTATACCATAAGGTTCGGTATGTACCATGTCGATTTCAGTACTCAAGA 1565
Query 1520 GAGAACCCCGAGACTATCAGCTTCTTGGTACGAAAACTTCATTTTCCAACACAGAGCTCA 1579
||||||||||||||| ||||||||||||||| |||||||||| ||||| ||||||||||
Sbjct 1564 GAGAACCCCGAGACTGTCAGCTTCTTGGTACAAAAACTTCATCTTCCAGCACAGAGCTCT 1505
Query 1580 ATCCAAAGATGATTGATGCCT 1600
||| ||||||||||| |||||
Sbjct 1504 ATCAAAAGATGATTGGTGCCT 1484
Score = 82.4 bits (44), Expect = 1e-14
Identities = 46/47 (98%), Gaps = 0/47 (0%)
Strand=Plus/Minus
Query 1360 TGAAGTTCATGAGTAACTACTTAGATGCACTCAAAAGAGCAATGAGG 1406
||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1798 TGAAGTTCATGAGCAACTACTTAGATGCACTCAAAAGAGCAATGAGG 1752
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84688319415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5