BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492702
Length=805
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21745.1 | Symbols: | PAK-box/P21-Rho-binding family protei... 809 0.0
> AT4G21745.1 | Symbols: | PAK-box/P21-Rho-binding family protein
| chr4:11548618-11550622 FORWARD LENGTH=1020
Length=1020
Score = 809 bits (438), Expect = 0.0
Identities = 587/654 (90%), Gaps = 29/654 (4%)
Strand=Plus/Plus
Query 75 AGAGCTCCTCAGATTAAAACCAACAAGCGAGAGTCTCTATAATAATCTTCAGATAAGGAA 134
|||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 196 AGAGTTCCTCATATTAAAACCAACAAGCGAGAGTCTCTGTAATAATCTTCAGATAAGGAA 255
Query 135 TACTGCTTGTGTTGAGC--C-T-C---T-T---AC---AATTAA--TTTTGGAGGTGGCT 178
|||| ||||| |||||| | | | | | || ||||| |||||||| |||||
Sbjct 256 TACTTCTTGTATTGAGCTTCTTACAAATATAAAACTTTCATTAACGTTTTGGAGTTGGCT 315
Query 179 TGTGATCTTCTAGATCAACATTCAACAATGGCAATGAAGATGAAGGGCATCTACAAAAGC 238
| ||||||||| |||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 316 TCTGATCTTCTCCATCAACATTCAACAATGGCAATGAAGATGAAGGGAATATACAAAAGC 375
Query 239 TTCAAATCCAT-CTCTCTAATTTCGAAAGAAAGAGATTTGGAAATTGGGCACCCAACAGA 297
||||||||||| | | | || ||||||||||||||||||||||||||||||||||||
Sbjct 376 TTCAAATCCATAATGT-TTGTTGGGAAAGAAAGAGATTTGGAAATTGGGCACCCAACAGA 434
Query 298 AGTAAAACATGTGGCCCATATTGGTTGGGAGGGCTCCTCTGGCAGTGCTCCTGCTTGGAT 357
||||||||||||||||||||||||||||| | |||||||||||||| ||||| ||||||
Sbjct 435 AGTAAAACATGTGGCCCATATTGGTTGGG-G--CTCCTCTGGCAGTGATCCTGGTTGGAT 491
Query 358 GAGTGACTTTAAGGCAGGAGCAGAGTTTTTATCTCCAAGAGCATCATCTTTCAGTCATGC 417
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 492 GAGTGACTTTAAGGCAGGAGCAGAGTTTTTATCTCCAAGAACATCATCTTTCAGTCATAC 551
Query 418 AAGACATTCAGATTCTTTCTTCACCACTTCAGATTCCACCGA-T-CAAGGCTCA--ACTC 473
|||||||||||||||||||||||||||||| |||||||| || | | | ||| || |
Sbjct 552 AAGACATTCAGATTCTTTCTTCACCACTTCTGATTCCACTGAATTCGA---TCAGGAC-C 607
Query 474 AACTAAATATATCGGATAGGATAAGAGATGTGCCTCCGATTCCAGTAGGTCTATCCAAGA 533
|||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 608 AACTGAATATATCAGATAGGATAAGAGATGTGCCTCCTATACCAGTAGGTCTATCCAAGA 667
Query 534 TTCATACTAAAAGCAAGAATAGGAGAAAGAAACCATCTTCGACATCATCACCAAGATCCA 593
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 668 TTCATACTAAGAGCAAGAATAGGAGAAAGAAACCATCTTCGACGTCATCACCAAGATCCA 727
Query 594 GACCATCTCCAAAATCTTCGAGATCAATGGGTTTATCGAAATCATCGCATAAGTCAATGG 653
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 728 GACCATCTCCAAAATCTTCGAGATCAATGGGTTTATCGAAGTCATCACATAAATCAATGG 787
Query 654 TATCTCGGTTACACTCTAATGCATAACTAGAGTGAACTAAAAAGTACCATGAAt 707
| ||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 788 TGTCTCGGTTAAACTCTAATGCATAATTAGAGTGAACTAAAAAGTACAATGAAT 841
Score = 126 bits (68), Expect = 3e-28
Identities = 74/77 (96%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 1 TATGGTAAATTATATGTTTGCTTAGTGAGAATTTTATACGCAAATGCTTTGAGGCTTCTC 60
||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||
Sbjct 95 TATGGTAAATTATATGTTTGCTTAGTGAGAACTTTATACGGAAATGCTTAGAGGCTTCTC 154
Query 61 CATCAAATGAAAGAAGA 77
|||||||||||||||||
Sbjct 155 CATCAAATGAAAGAAGA 171
Score = 89.8 bits (48), Expect = 4e-17
Identities = 59/64 (92%), Gaps = 2/64 (3%)
Strand=Plus/Plus
Query 743 TTTGTTTT-CGTAGTTCTCATATTTCGGCAAGTTCTATGTACATTGTAGAAAGACGTaaa 801
||| |||| |||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 942 TTT-TTTTCCGTAGTTCTCATATATCGAAAAGTTCTATGTACATTGTAGAAAGACGTAAA 1000
Query 802 aaaa 805
||||
Sbjct 1001 AAAA 1004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39182634660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5