BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492707
Length=1979
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21680.1 | Symbols: NRT1.8 | NITRATE TRANSPORTER 1.8 | chr4:... 2928 0.0
AT4G21670.1 | Symbols: CPL1, FRY2, ATCPL1 | C-terminal domain p... 60.2 7e-08
> AT4G21680.1 | Symbols: NRT1.8 | NITRATE TRANSPORTER 1.8 | chr4:11517353-11519765
REVERSE LENGTH=2146
Length=2146
Score = 2928 bits (1585), Expect = 0.0
Identities = 1815/1927 (94%), Gaps = 11/1927 (1%)
Strand=Plus/Plus
Query 1 AATCTTTAGGATCATCAAGATAAGGAATCTTTTTGAATATCTCTCTACACGAAATCGAAT 60
|||| ||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||
Sbjct 128 AATCATTAGGATCATCAAGATAAGGAATCTTTTTGAGTATATCTCTACACCAAATCGAAT 187
Query 61 CGATGGATCAAAAAGTTAGACAATTTGAGGTTTGCACACAAGACGGTAGCGTTGATCGTC 120
| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 188 CTATGGATCAAAAAGTTAGACAGTTTGAGGTTTGCACTCAAGACGGTAGCGTTGATCGTC 247
Query 121 ACGGCAATCCAGCTATCCGGGCCAATACCGGAAAATGGCTCACTGCTATTCTCATTCTAG 180
||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 248 ACGGCAATCCAGCTATCCGAGCTAATACCGGCAAATGGCTCACTGCTATTCTCATTCTAG 307
Query 181 TGAATCAAGGACTAGCCACGCTTGCGTTCTTCGGTGTTGGAGTGAATTTGGTTCTGTTTC 240
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 308 TGAATCAAGGACTAGCTACGCTTGCGTTCTTCGGTGTAGGAGTGAATTTGGTTCTGTTTC 367
Query 241 TGAC-CAGAGTGATGGGACAAGACAATGCAGAAGCGGCCAATAATGTTAGTAAATGGACT 299
|||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 368 TGACTC-GAGTGATGGGACAAGACAATGCAGAAGCGGCTAATAATGTTAGTAAATGGACA 426
Query 300 GGAACTGTTTATATCTTCTCTTTGCTCGGTGCTTTCCTCAGTGACTCTTATTGGGGACGT 359
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 427 GGAACTGTCTATATCTTCTCTTTGCTTGGTGCTTTCCTCAGTGACTCTTATTGGGGACGT 486
Query 360 TACAAGACTTGTGCAATCTTTCAAGCAAGTTTCGTTGCAGGATTGGTGATGTTATCTTTA 419
|||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 487 TACAAGACTTGTGCTATCTTTCAAGCAAGTTTCGTTGCAGGGTTGATGATGTTATCTTTA 546
Query 420 TCTACTGGTGCGTTATTGCTTGAACCTAGTGGTTGTGGAGTTGAAGAGTCACCGTGTAAG 479
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 547 TCTACTGGTGCGTTATTGCTTGAACCAAGTGGTTGTGGAGTTGAAGATTCGCCGTGTAAG 606
Query 480 CCTCACTCCACGTTTAAGACGGTTCTGTTTTATCTATCGGTGTACCTAATCGCCTTAGGG 539
||||| || |||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 607 CCTCATTCGACGTTTAAGACGGTTCTGTTTTATCTGTCGGTGTATCTAATCGCGTTAGGG 666
Query 540 TATGGTGGTTATCAGCCAAACATAGCGACGTTTGGAGCTGATCAGTTTGATGCAGAGGAT 599
||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||
Sbjct 667 TATGGTGGTTATCAGCCGAACATAGCTACTTTTGGAGCTGATCAGTTTGATGCGGAGGAT 726
Query 600 TCCGTTGAAGGACACTCGAAAATAGCATTTTTCAGTTACTTTTACTTAGCTCTGAATCTT 659
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 727 TCCGTTGAAGGACACTCGAAAATCGCGTTTTTCAGTTACTTTTACTTGGCTCTGAATCTT 786
Query 660 GGATCGCTCTTCTCGAATACTGTCTTGGGTTACTTCGAGGATCAAGGGGAATGGCCGCTA 719
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 787 GGATCGCTCTTCTCAAATACTGTCTTGGGTTACTTTGAGGATCAAGGGGAATGGCCGCTT 846
Query 720 GGTTTTTGGGCGTCCGCAGGCTCTGCTTTTGCGGGTTTAGTACTTTTCTTGACCGGCACA 779
|| ||||||||||| || ||||||||||||||||| ||||| |||||||||| |||||
Sbjct 847 GGATTTTGGGCGTCTGCTGGCTCTGCTTTTGCGGGGTTAGTGCTTTTCTTGATTGGCACG 906
Query 780 CCAAAGTACCGACATTTTACGCCTAGAGAGAGTCCTTGGTCTAGATTCTGCCAAGTGTTG 839
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 CCAAAGTACCGACACTTTACGCCTAGAGAGAGTCCTTGGTCTAGATTCTGCCAAGTGTTG 966
Query 840 GTTGCTGCAACAAGAAAGGCTAAGATTGATGTGGACCATGAGGACTTGAATCTTTATGAT 899
||||||||||||||||||||||||||||||||| ||||||| || |||||||| ||||||
Sbjct 967 GTTGCTGCAACAAGAAAGGCTAAGATTGATGTGCACCATGAAGAGTTGAATCTCTATGAT 1026
Query 900 TCTGAGACTCAACGA-ACTGGAGATAAGAAAATTCTTCATACCAAAGGCTTCAGATTCTT 958
|||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1027 TCTGAGACTCAA-TACACTGGAGATAAGAAGATTCTTCATACCAAAGGCTTCAGATTCTT 1085
Query 959 GGATAGAGCTGCGATAGTTACGCCTGACGATGAGGCTGAGAAAGTCGAGAGCGGATCAAA 1018
|||||||||||| || ||||| ||||| ||||||||||||||||| ||||||||||| ||
Sbjct 1086 GGATAGAGCTGCTATTGTTACACCTGATGATGAGGCTGAGAAAGTAGAGAGCGGATCGAA 1145
Query 1019 ATACGATTCATGGAGGCTTTGCTCGGTGACTCAAGTCGAAGAAGTGAAATGTGTGTTAAG 1078
||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1146 ATACGATCCATGGAGGCTCTGCTCGGTGACTCAAGTCGAAGAAGTGAAATGTGTATTAAG 1205
Query 1079 ACTCTTACCAATCTGGCTCTGCACCATCCTCTACTCTGTGGTTTTCACTCAGATGGCTTC 1138
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1206 ACTCTTACCAATCTGGCTCTGCACCATCCTCTACTCTGTGGTTTTCACCCAAATGGCTTC 1265
Query 1139 ACTGTTCGTGGTGCAAGGCGCGGCGATGAAGACAAACATTAAAAACTTCCGAATTCCAGC 1198
||||||||| |||||||| || ||||||||||||||||| ||||||||||| ||||||||
Sbjct 1266 ACTGTTCGTTGTGCAAGGAGCAGCGATGAAGACAAACATCAAAAACTTCCGGATTCCAGC 1325
Query 1199 TTCAAGCATGTCTAGTTTCGACATTCTCAGCGTCGCCTTCTTCATCTTTGCTTACAGGCG 1258
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 1326 TTCAAGCATGTCTAGTTTCGACATTCTCAGTGTCGCCTTCTTCATCTTCGCATACAGGCG 1385
Query 1259 GTTTCTTGATCCACTCTTTGCTAGACTTAACAAAACAGAACCCAACAAAGGTCTCACTGA 1318
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1386 GTTTCTTGATCCACTCTTTGCAAGACTTAACAAAACAGAACGCAACAAAGGTCTCACTGA 1445
Query 1319 GCTTCAGAGGATGGGAATTGGGCTTGTGATTGCGATAATGGCGATGATTTCAGCGGGAAT 1378
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1446 GCTTCAGAGGATGGGGATTGGGCTTGTGATTGCGATAATGGCGATGATTTCCGCAGGAAT 1505
Query 1379 TGTAGAGAT-CTACAGACTGAAAAATAAAGAACCAGAAAGTTCTACCTCGGTCTCAAGCT 1437
|||||||| | |||||||||||||||| ||||| |||||| |||| ||| |||||||||
Sbjct 1506 CGTAGAGATAC-ACAGACTGAAAAATAAGGAACCGGAAAGTGCTACTTCGATCTCAAGCT 1564
Query 1438 CGAGCTCTTTGAGCATATTCTGGCAAGTACCTCAGTACATGTTGATAGGTGCATCAGAAG 1497
| ||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1565 CCAGCACTTTGAGCATTTTTTGGCAAGTACCTCAGTACATGTTGATAGGTGCATCAGAAG 1624
Query 1498 TGTTCATGTATGTTGGTCAACTCGAGTTCTTCAACAGCCAAGCACCAACAGGGCTAAAGA 1557
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1625 TGTTCATGTACGTTGGTCAACTCGAGTTCTTCAACAGCCAAGCACCAACCGGGCTAAAGA 1684
Query 1558 GCTTTGCAAGCGCGCTATGTATGGCTTCAATATCTCTTGGGAACTATGTAAGCAGTTTGT 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1685 GCTTTGCAAGCGCGCTATGTATGGCTTCAATATCTCTTGGGAACTATGTAAGCAGTTTGT 1744
Query 1618 TAGTTTCCATTGTCATGAAGATCTCTACAACAGATGACGTGCCTGGCTGGATTCCTGAAA 1677
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1745 TAGTTTCCATTGTCATGAAGATCTCTACAACAGATGATGTGCATGGCTGGATTCCTGAAA 1804
Query 1678 ACCTCAACAAAGGACACTTGGAGAGATTCTACTTCCTTTTAGCTGGTCTAACCGCAGCTG 1737
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1805 ATCTCAACAAAGGACACTTGGAGAGATTCTACTTCCTTTTAGCTGGTCTAACCGCTGCTG 1864
Query 1738 ATTTCGTGGTTTACCTGATTTGTGCCAAATGGTATAAGTATATCAAGTCTGAAGCAAGTT 1797
|||||||||||||| ||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 1865 ATTTCGTGGTTTACTTGATTTGTGCCAAATGGTACAAGTATATTAAATCTGAAGCAAGTT 1924
Query 1798 TCTCTGAGTCCGTGACTGACGAGGAGGAAGTCTGAGTCAG-AGCTAGAGAGTTTTTGTGT 1856
||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 1925 TCTCTGAGTCCGTAACTGAAGAGGAGGAAGTCTGAGTCAGGAGCTAGAGAGTTTT-GTGT 1983
Query 1857 TTTATTT-A-TGCTGTGAAGCTTTTTAC-GTAAATTGTTCAAAGCTGAGCTAGTTCTGTG 1913
||||||| | |||||||||||||||||| |||| ||||| ||||||||||| ||||||||
Sbjct 1984 TTTATTTTAATGCTGTGAAGCTTTTTACAGTAATTTGTTTAAAGCTGAGCTTGTTCTGTG 2043
Query 1914 ATATAAA 1920
|||||||
Sbjct 2044 ATATAAA 2050
Score = 86.1 bits (46), Expect = 1e-15
Identities = 53/56 (95%), Gaps = 2/56 (4%)
Strand=Plus/Plus
Query 1925 TACTCTTGTGCAAAGTCTT-GTTAATGTTTCTCAATAAAGGATAAGTTGATTCCAC 1979
|||||||||||||||| || ||| ||||||||||||||||||||||||||||||||
Sbjct 2082 TACTCTTGTGCAAAGT-TTAGTTGATGTTTCTCAATAAAGGATAAGTTGATTCCAC 2136
> AT4G21670.1 | Symbols: CPL1, FRY2, ATCPL1 | C-terminal domain
phosphatase-like 1 | chr4:11511115-11517396 FORWARD LENGTH=3774
Length=3774
Score = 60.2 bits (32), Expect = 7e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Minus
Query 1948 ATGTTTCTCAATAAAGGATAAGTTGATTCCAC 1979
||||||||||||||||||||||||||||||||
Sbjct 3772 ATGTTTCTCAATAAAGGATAAGTTGATTCCAC 3741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98041664385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5