BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492714
Length=597
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21610.1 | Symbols: LOL2 | lsd one like 2 | chr4:11488976-11... 856 0.0
> AT4G21610.1 | Symbols: LOL2 | lsd one like 2 | chr4:11488976-11490398
FORWARD LENGTH=659
Length=659
Score = 856 bits (463), Expect = 0.0
Identities = 558/603 (93%), Gaps = 10/603 (2%)
Strand=Plus/Plus
Query 1 GACATATTCGCCGGGAG-CGAGACGGAAGGCGTGATGGAAGAGATAC-A-AACGCA-GAA 56
||||| |||||| |||| ||||||||||||||||||||||||||||| | ||| | | |
Sbjct 61 GACATCTTCGCC-GGAGCCGAGACGGAAGGCGTGATGGAAGAGATACAACAACAAACGCA 119
Query 57 GAAGGAAGAACAAAAGCACCGTGAA-ACTGAAGAAGAAGAGGAGGAAGGACCTCCTCCGG 115
||||||||||||||||||||||||| | ||||| || || |||||||| || |||||||
Sbjct 120 GAAGGAAGAACAAAAGCACCGTGAAGA-AGAAGAGGAGGAAGAGGAAGGTCCGCCTCCGG 178
Query 116 GATGGGAATCTGCAGTTCTTCCTCCTCCAATCGCCACCGTCACCGCCGCCGTAAACCCCA 175
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 179 GATGGGAATCTGCAGTTCTTCCTCCTCCAATCGTCACCATCACCGCCGCCGTAAACCCCA 238
Query 176 ATCCCACCGCCGTCGAAATTCCCGAAAAGGCGCAAATGGTATGTGGATCTTGCAGGCGTT 235
|||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 239 ATCCCACCACCGTAGAAATTCCCGAAAAGGCCCAAATGGTATGTGGATCTTGCAGGCGTT 298
Query 236 TACTTTCGTATCTAAGAGGATCCAAACATGTCAAGTGCTCGTCTTGTCAAACTGTTAATC 295
| ||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||
Sbjct 299 TGCTTTCTTATCTAAGAGGATCCAAACATGTTAAGTGCTCCTCTTGTCAGACTGTTAATC 358
Query 296 TCGTTCTTGAAGCTAACCAGGTTGGTCAGGTGAACTGCAACAATTGTAAACTGCTCCTGA 355
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 359 TCGTTCTTGAAGCTAACCAGGTTGGTCAGGTGAATTGCAACAATTGCAAACTGCTACTGA 418
Query 356 TGTATCCTTATGGAGCTCCATCTGTTAGATGTTCCTCCTGCAATTCTGTCACAGATATCA 415
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 419 TGTATCCTTATGGAGCTCCAGCTGTTAGATGTTCCTCCTGCAATTCTGTCACAGATATCA 478
Query 416 GCGAGAACAACAAACGACCTCCATGGTCTGAACAGCAAGGACCACTCAAAAGTATAAGCA 475
| || |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 479 GTGAAAACAACAAACGACCTCCATGGTCTGAGCAGCAAGGACCACTCAAAAGTTTAAGCA 538
Query 476 GTATCCGGTGAGCAGAGAATTAAACTTGAACCGATTTTTGGTCAATTTTGAACCGGTTTG 535
|| || || ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 539 GTCTCAGGAGAGCAGAGAATTAAACTTGAACCGATTTTTG-TCAATTTTGAACCGGTTTG 597
Query 536 ATGACTaaaaaaaCTTGTAATAATGT-GAAGGATAGATGAAACAAAATCACCATTAGTAA 594
| ||||||||| ||||||||||||| ||||||||||||||| ||||||||||||| |||
Sbjct 598 ACGACTAAAAAC-CTTGTAATAATGTCGAAGGATAGATGAAATAAAATCACCATTAATAA 656
Query 595 TCT 597
|||
Sbjct 657 TCT 659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28733932084
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5