BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492715
Length=679
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21605.1 | Symbols: | pseudogene, hypothetical protein | ch... 848 0.0
AT3G09385.1 | Symbols: | pseudogene, hypothetical protein | ch... 412 2e-114
> AT4G21605.1 | Symbols: | pseudogene, hypothetical protein |
chr4:11487646-11488821 FORWARD LENGTH=1176
Length=1176
Score = 848 bits (459), Expect = 0.0
Identities = 626/701 (89%), Gaps = 33/701 (5%)
Strand=Plus/Plus
Query 1 ATGGATTGTCGTACTCACACATGGGGTGAGGCCCCAAGAATGCAGGTAGCCCGTGTGTTC 60
|||||||||||||||||||||||| |||||||||| || |||||||| |||||||||||
Sbjct 486 ATGGATTGTCGTACTCACACATGGTGTGAGGCCCCTAGCATGCAGGTTTCCCGTGTGTTC 545
Query 61 CAATCTACTTGCGTCTTTGATGGAAAAATATATGTAATAGGAGGCCGCGGAACTCTCGAT 120
||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 546 CAATCTACTTGCGTCCTTGATGGGAAAATATATGTAACAGGAGGCCGCGGAACTCTCGAT 605
Query 121 TCAACGAAATGGATGGAGGTTTTTGATACAAAAACCCAAACTTGGGAGTTTTTGCAATTC 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 606 TCAACGAAATGGATGGAGGTTTTTGATACGAAAACCCAAACTTGGGAGTTTTTGCAATTC 665
Query 181 CCTAGCGAGGAGAAGATATGCGA-AGGCTATAAGTACGAGAGCATAGTGTATGAAGGAAC 239
|| || ||||||||||||||| | ||||||||||| |||||||||||||||||||||||
Sbjct 666 CCGAGTGAGGAGAAGATATGC-ACAGGCTATAAGTGTGAGAGCATAGTGTATGAAGGAAC 724
Query 240 CGTCTATGTAAGGTC-TCATGATCAAAATGTGACTTACAAGCTGCATAAAGGTAGATGGA 298
|||||||||||||| | || ||| ||||||||||||||||||||||||||||||||||
Sbjct 725 TGTCTATGTAAGGTCGT-ATTTTCATAATGTGACTTACAAGCTGCATAAAGGTAGATGGA 783
Query 299 TAGAGGCAGACTTAGCGATGAATAATGGATGGAGTTGCTCATCATCTTTTTGTGTGATAG 358
||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 784 TAGCGGCAGACTTAGCGATGAATAATGGATGGCGTTGCTCATCATTTTTTTGTGTGATAA 843
Query 359 AGAACGTGTTCTACTGTTGTAATAGAAATGGTAACGGTATGATCGATTGGTATGACTCTG 418
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
Sbjct 844 AGAACGTGTTCTACTGTTGCAATAGAAGTGGTAACGGTATGATCGATTGGTATGACTCGG 903
Query 419 aaaaaaaaGT-ATGGACAACTTTGAAGGGGTTGAAAAGATTGCCTAAACTTTATGGGAAT 477
||||| | | |||||||||| ||||||||||| |||||||||||||| ||||||| |||
Sbjct 904 AAAAAGGA-TCATGGACAACTATGAAGGGGTTGGAAAGATTGCCTAAAGTTTATGGTAAT 962
Query 478 GTTAAATTGGCAGATTATGGTGGAAAAATGATGGTG-T-T--GTGGAA----AAG-AGTT 528
|||||||||||| ||||||||||||||||| ||||| | | ||||| ||| |||
Sbjct 963 GTTAAATTGGCATATTATGGTGGAAAAATGGTGGTGGTGTACGTGGAGTGCTAAGGAGTG 1022
Query 529 TCGTAT-GTTATGACCCAAAGATTTGGTGTGCGGAAATCACGATTGAAAAACGCAAGGAT 587
||| || | || ||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1023 GGGTAACGTGA-GA---AAA-ATTTGGTGTGCGGAAATTACGATTGAAAAACGCAAGGAT 1077
Query 588 GGAGAGATTTGGGGGATACTAGAATGGTTTGACGTTGTATATAAAGCCAATGTGGATGAG 647
|||||||||||||||||||||||||||||||||| ||||||||||||||| | | |||||
Sbjct 1078 GGAGAGATTTGGGGGATACTAGAATGGTTTGACGATGTATATAAAGCCAA-G-G-ATGAG 1134
Query 648 CTACA-T-TT-AG----AG--CATGCTCTTGTTACTACCAT 679
||| | | || || || |||||| |||||||||||||
Sbjct 1135 CTAGAATATTTAGCTGTAGTGCATGCTGTTGTTACTACCAT 1175
> AT3G09385.1 | Symbols: | pseudogene, hypothetical protein |
chr3:2886535-2887714 FORWARD LENGTH=1180
Length=1180
Score = 412 bits (223), Expect = 2e-114
Identities = 553/704 (79%), Gaps = 55/704 (8%)
Strand=Plus/Plus
Query 1 ATGGATTGTCGTACTCACACATGGGGTGAGGCCCCAAGAATGCAGGTAGCCCGTGTGTTC 60
||||||||| | ||||||||||| ||||||| ||||| ||||| || |||||| ||| |
Sbjct 465 ATGGATTGTTATTCTCACACATGGCGTGAGGCACCAAGTATGCATGTGGCCCGTTTGTCC 524
Query 61 CAATCTACTTGCGTCTTTGATGGAAAAATATATGTAATAGGAGGCCGCGGAACTCTCGAT 120
|| ||| ||| ||| |||||| ||||||||||||| |||||| || || ||| |||
Sbjct 525 CACTCTGTTTGTGTCCATGATGGGAAAATATATGTAACAGGAGGTTGCAAAAATCTTGAT 584
Query 121 TCAACGAAATGGATGGAGGTTTTTGATACAAAAACCCAAACTTGGGAGTTTTTGCA-ATT 179
|||||||| |||||||||||||||||||| | ||||||||||||||||||||||| | |
Sbjct 585 TCAACGAATTGGATGGAGGTTTTTGATACGCAGACCCAAACTTGGGAGTTTTTGCAGA-T 643
Query 180 CCCTAGCGAGGAGAAGATATGCGAAGGCT-ATAAGTACGAG-AGCATAGTGTATGAAGGA 237
||||||||||||| | || || | ||||| | |||||| || ||| ||| ||||||||||
Sbjct 644 CCCTAGCGAGGAG-ATATTTG-G-AGGCTCA-AAGTAC-AGAAGCGTAGAGTATGAAGGA 698
Query 238 ACCGTCTATGTAAGGTCTCATGATCAAA--ATGTGACTTACAAGCTGCATAAAGGTAGAT 295
|| |||||||||| |||| | | |||| ||||||||||||||||||||||||||||||
Sbjct 699 ACTGTCTATGTAAAGTCTGA-G-GCAAAGGATGTGACTTACAAGCTGCATAAAGGTAGAT 756
Query 296 GGATAG-AGGCAGACTTAGCGATGAATAATGGATGGAGTTG-C-T-CATCATCT--TT-T 348
|| | || ||||| ||||||| ||||| || ||| | || | | ||| ||| || |
Sbjct 757 GGCGAACAG-CAGACATAGCGATAAATAAAGGGTGGTGATGTCCTTCATTATCCCATTAT 815
Query 349 TGTGTGATAGAGAACGTGTTCTACTGTTGTAATAGAAATGGTAACGGTATGATCGATTGG 408
|||||||||||||||||||||||| ||| || | || | | || | | ||||| |||
Sbjct 816 TGTGTGATAGAGAACGTGTTCTACCGTTATACT-GATA-G--AA-G--A--ATCGAATGG 866
Query 409 TATGACTCTGaaaaaaaaGTATGGACAACTTTGAAGGG-GTTGAAAAGATTGCCTAAACT 467
|||||||| ||||||| | |||||||||||||||| || || ||||| ||||| || |
Sbjct 867 TATGACTCCGAAAAAAGATTATGGACAACTTTGAAAGGTGTGGAAAA-ATTGCGTAGTTT 925
Query 468 TTATGGGAATGTTAAA-TTGGCAGA-TTATGGTGGAAAAATGATGGT-GTTGT-GGAAAA 523
|| | | ||| ||| |||| || ||||||||| |||||| || || || || | |
Sbjct 926 TTCTCG---TGT-AAACTTGGT-GAATTATGGTGGGAAAATGGCAGTTGT-GTCGGTAGA 979
Query 524 G-A-GT-TTCG-TATGTTATGACCCAAAGATTTGGTGTGCGGAAATCACGATTGAAAAAC 579
| | || |||| || | | || |||| |||||||| |||||||| ||||||||||||
Sbjct 980 GTATGTGTTCGGTAAGA-AGGAGGCAAAAATTTGGTGGGCGGAAATTGCGATTGAAAAAC 1038
Query 580 G-CAAGGATGG-AGAGATTTGGGGGATACTAGAATGGTTTGACGTTGTATATA-AAGCCA 636
| ||| | || |||||||||||| || ||||| ||| ||||| |||| | || || |||
Sbjct 1039 GTCAA--ACGGGAGAGATTTGGGGAATGCTAGAGTGGCTTGACATTGTGTTTAGAA-CCA 1095
Query 637 ATGTGGA-TGAGCTACATTTAGAGCATGCTCTTGTTACTACCAT 679
||| | | | || |||||||| |||||||| |||||||||
Sbjct 1096 ATGACAAGTCATATAG-TTTAGAGCGTGCTCTTGCTACTACCAT 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32853132138
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5