BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492716
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21600.1 | Symbols: ENDO5 | endonuclease 5 | chr4:11485119-1... 1273 0.0
AT4G21585.1 | Symbols: ENDO4 | endonuclease 4 | chr4:11477988-1... 776 0.0
AT4G21590.1 | Symbols: ENDO3 | endonuclease 3 | chr4:11480360-1... 732 0.0
> AT4G21600.1 | Symbols: ENDO5 | endonuclease 5 | chr4:11485119-11487416
FORWARD LENGTH=1148
Length=1148
Score = 1273 bits (689), Expect = 0.0
Identities = 821/881 (93%), Gaps = 23/881 (3%)
Strand=Plus/Plus
Query 1 GGATACTTTGAGGATGATACTATTGCTGCAGTGAAGAAACTTCTGCCTGAATCTGCTGAT 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 179 GGATTCTTTGAGGATGATACTATTGCTGCAGTGAAGAAACTTCTGCCTGAATCAGTTGAT 238
Query 61 GGTGAT---CTAGGTGATTTTTGCTCTTGGCCTGATGAAATTAAAAAACTCTCGCAATGG 117
|||| | |||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 239 GGTGGTGGACTAGCAGATTTTTGCTCATGGCCTGATGAAATTAAAAAACTCTCGCAATGG 298
Query 118 CAATGGACTAGCGCTTTGCACTATGTTAACACTCCTAAAGACAGATGCAACTACGAATAT 177
|||||||||||| ||||||||||||||||||| ||| || |||| ||||||||||| |||
Sbjct 299 CAATGGACTAGCACTTTGCACTATGTTAACACACCTGAATACAGGTGCAACTACGAGTAT 358
Query 178 TGTCGGGACTGCCATGACACTCATAAGCATAAAGG-CTGGTGCGTGACAGGAGCAATCTT 236
|| ||||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||
Sbjct 359 TGCCGGGACTGCCATGACACTCATAAGCAT-AAGGACTGGTGTGTGACAGGAGCGATCTT 417
Query 237 CAATTACACAAAACAATTAATGTCTGCTTCTGAAAACTCACAGAATTTATTTACTAATTT 296
|||||||||||| || ||||||||||||||||||||||||||| | | || | |
Sbjct 418 CAATTACACAAACCAGTTAATGTCTGCTTCTGAAAACTCACAG-A---A--TA-T-A--- 466
Query 297 GTGTGCGAAAAACTTGACAGAGGCTCTCATGTTCTTATCACATTATATGGGAGATGTTCA 356
|| | | |||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 467 GTCCAC-TACAACTTGACAGAGGCTCTCTTGTTCTTGTCACATTATATGGGAGATGTTCA 525
Query 357 TCAGCCCTTGCATACTGGTTTTCTTGGAGATCTAGGTGGTAACACAATAATAGTCAACTG 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TCAGCCCTTGCATACTGGTTTTCTTGGAGATCTAGGTGGTAACACAATAATAGTCAACTG 585
Query 417 GTACCATAACGAAA-CAAATTTGCACCATGTCTGGGATAACATGATAATTGACTCTGCTC 475
|||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 586 GTACCATAAC-AAATCAAATTTGCACCATGTCTGGGACAACATGATAATTGACTCTGCTC 644
Query 476 TAGAAACATACTACAATTCAAGCCTTCCACGCATGATTCAAGCCCTTCAAGCCAAACTCA 535
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 645 TAGAAACATACTACAATTCAAGCCTTCCACACATGATTCAAGCTCTTCAAGCCAAACTCA 704
Query 536 AGAACGGCTGGTCAAATGATGTTCCGTCGTGGAAGTCATGTCACTTTCACCAAAAGGCCT 595
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 AGAACGGCTGGTCGAATGATGTTCCGTCGTGGAAGTCATGTCACTTTCACCAAAAGGCCT 764
Query 596 GTCCAAATCTGTATGCTTCTGAAAGCATTGATCTCGCCTGCAAGTATGCTTACAGGAACG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 GTCCAAATCTGTATGCTTCTGAAAGCATTGATCTCGCCTGCAAGTATGCTTACAGGAACG 824
Query 656 CTACTCCAGGGACTACTTTAGGAGATGAGTATTTCCTTTCTCGGTTACCCGTTGTAGAGA 715
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 CTACTCCGGGGACTACTTTAGGAGATGAGTATTTCCTTTCTCGGTTACCCGTTGTAGAGA 884
Query 716 AGAGACTTGCACAAGGTGGGATTCGCTTGGCAGCGACTCTTAACCGTATCTTTTCTGCAA 775
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 885 AGAGACTTGCACAAGGTGGGATTCGCTTGGCAGCTACTCTTAATCGTATCTTTTCTGCAA 944
Query 776 AACCGAAGCTCGCTGGATTATGAAAGTAAGAAAAAGATC-TTAGAGAATCCACTTAACAA 834
||||||||||||| |||||||||| ||||||||||||| || ||||| |||| ||||||
Sbjct 945 AACCGAAGCTCGCAGGATTATGAATCTAAGAAAAAGATCCTT-GAGAACCCACGTAACAA 1003
Query 835 CTC-TTTTAAGTGTTTTTTA-AACACTGTGAATGGTTGAGT 873
||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1004 CTCCTTTTAAGTGTTTTTTATAACACTGTGAATGGTTGAGT 1044
> AT4G21585.1 | Symbols: ENDO4 | endonuclease 4 | chr4:11477988-11479953
FORWARD LENGTH=900
Length=900
Score = 776 bits (420), Expect = 0.0
Identities = 679/802 (85%), Gaps = 26/802 (3%)
Strand=Plus/Plus
Query 4 TACTTTGAGGATGATACTATTGCTGCAGTGAAGAAACTTCTGCCTGAATCTGCTGATGGT 63
||||||||||| || ||| | ||||| |||||||||||||| ||| |||| ||||||||
Sbjct 118 TACTTTGAGGAAGAAACTGTAGCTGCGGTGAAGAAACTTCTACCTAAATCAGCTGATGGA 177
Query 64 GATCTAGGTGAT-T-TTTGCTCTTGGCCTGATGAAATTAAAAAAC-TCTCGCAATGGCAA 120
|||||| | || | ||||||| ||||||||||| ||||| | | | | |||||||| |
Sbjct 178 GATCTA-G-CATCTGTTTGCTCATGGCCTGATGAGATTAAGCACCAT-TGGCAATGGCGA 234
Query 121 TGGACTAGCGCTTTGCACTATGTTAACACTCCTAAAGACAGATGCAACTACGAATATTGT 180
||||||||| |||||||||||||| |||| ||| | |||||||||||||||| ||||||
Sbjct 235 TGGACTAGCCCTTTGCACTATGTTGACACACCTGATTACAGATGCAACTACGAGTATTGT 294
Query 181 CGGGACTGCCATGACACTCATAAGCATAAAGGCTGGTGCGTGACAGGAGCAATCTTCAAT 240
||||| |||||||| ||||||||| || ||| | |||| ||||||||||| || ||||||
Sbjct 295 CGGGATTGCCATGATACTCATAAGAATCAAGACCGGTGTGTGACAGGAGCTATTTTCAAT 354
Query 241 TACACAAAACAA-TTAATGTCTGCTTCTGAAAACTCACAGAATTTATTTACTAATTTGTG 299
||||| | ||| || ||||| ||||||||||||| | | | |||| | | ||
Sbjct 355 TACACTATGCAACTT-ATGTCCGCTTCTGAAAACT--C-G----GA--TACT-A-TAGTC 402
Query 300 TGCGAAAAACTTGACAGAGGCTCTCATGTTCTTATCACATTATATGGGAGATGTTCATCA 359
| | |||||||||||||||||||||||||||||||||| ||| |||||| |||| ||
Sbjct 403 CAC-TACAACTTGACAGAGGCTCTCATGTTCTTATCACATTTTATTGGAGATATTCACCA 461
Query 360 GCCCTTGCATACTGGTTTTCTTGGAGATCTAGGTGGTAACACAATAATAGTCAACTGGTA 419
|||||||||| ||||||||| |||||| |||||| ||||| |||| |||| ||||||
Sbjct 462 GCCCTTGCATGTTGGTTTTCTGGGAGATGAAGGTGGAAACACGATAACAGTCCGCTGGTA 521
Query 420 CCATAACGAAACAAATTTGCACCATGTCTGGGATAACATGATAATTGACTCTGCTCT-AG 478
|| | | |||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 522 CCGTCGCAAAACAAATTTACACCATGTCTGGGATAACATGATAATTGAGTCTGCTCTTA- 580
Query 479 AAACATACTACAATTCAAGCCTTCCACGCATGATTCAAGCCCTTCAAGCCAAACTCAAGA 538
|||||||||||||| ||| ||||||| ||||||| |||| ||||||||||| || | ||
Sbjct 581 AAACATACTACAATAAAAGTCTTCCACTCATGATTGAAGCACTTCAAGCCAATCTTACGA 640
Query 539 ACGGCTGGTCAAATGATGTTCCGTCGTGGAAGTCATGTCA-CTTTCACCAAAAGGCCTGT 597
||| |||||||||||||||||| | |||| |||||||||| ||| |||||| |||||||
Sbjct 641 ACGACTGGTCAAATGATGTTCCATTGTGGGAGTCATGTCAACTTA-ACCAAACGGCCTGT 699
Query 598 CCAAATCTGTATGCTTCTGAAAGCATTGATCTCGCCTGCAAGTATGCTTACAGGAACGCT 657
||||||| ||| || ||||||||||| |||| ||||||||||||||||| |||||||||
Sbjct 700 CCAAATCCGTACGCATCTGAAAGCATAAATCTAGCCTGCAAGTATGCTTATAGGAACGCT 759
Query 658 ACTCCAGGGACTACTTTAGGAGATGAGTATTTCCTTTCTCGGTTACCCGTTGTAGAGAAG 717
|| ||||||||||||||||||||||| |||||||| |||||||||||| |||| ||||||
Sbjct 760 ACCCCAGGGACTACTTTAGGAGATGACTATTTCCTCTCTCGGTTACCCATTGTGGAGAAG 819
Query 718 AGACTTGCACAAGGTGGGATTCGCTTGGCAGCGACTCTTAACCGTATCTTTTCTGCAAAA 777
|||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| |||||
Sbjct 820 AGACTTGCGCAAGGTGGGATACGCTTGGCAGCCACTCTTAACCGTATCTTTTCTTCAAAA 879
Query 778 CCGAAGC-TCGCTGGATTATGA 798
|| |||| | ||||||| ||||
Sbjct 880 CCTAAGCAT-GCTGGATCATGA 900
> AT4G21590.1 | Symbols: ENDO3 | endonuclease 3 | chr4:11480360-11482719
FORWARD LENGTH=1194
Length=1194
Score = 732 bits (396), Expect = 0.0
Identities = 671/799 (84%), Gaps = 37/799 (5%)
Strand=Plus/Plus
Query 7 TTTGAGGATGATACTATTGCTGCAGTGAAGAAACTTCTGCCTGAATCTGCTGATGGTGAT 66
|||||||| |||||| | | ||| |||||||||||||||||||||||||| |||||||
Sbjct 285 TTTGAGGAAGATACTGTAGTTGCTGTGAAGAAACTTCTGCCTGAATCTGCAAATGGTGAG 344
Query 67 CTAGGTGATTTTTGCTCTTGGCCTGATGAAATTAAAAAACTCTCGCAATGGCAATGGACT 126
|||| | | ||||||| |||||||||||||| ||||| ||| ||||||||| |||||||
Sbjct 345 CTAGCAGCTGTTTGCTCATGGCCTGATGAAATCAAAAAGCTCCCGCAATGGCGATGGACT 404
Query 127 AGCGCTTTGCACTATGTTAACACTCCTAAAGACAGATGCAACTACGAATATTGTCGGGAC 186
|| |||||||| | || | | || ||| | ||| ||||||||| || || | |||||||
Sbjct 405 AGTGCTTTGCATTTTGCTGATACGCCTGATTACAAATGCAACTATGAGTACTCTCGGGAC 464
Query 187 TGCCATGACACTCATAAGCATAAAGGCTGGTGCGTGACAGGAGCAATCTTCAATTACACA 246
|| | | || | ||| | |||||| |||||||| |||||||||||||||||
Sbjct 465 TG---T--C-CT-A-AAG-----A--CTGGTGTGTGACAGGGGCAATCTTCAATTACACT 509
Query 247 AAACAATTAATGTCTGCTTCTGAAAACTCACAGAATTTATTTACTAATTTGTGTGCGAAA 306
|| ||| |||||||| ||||||||||||||||| | || | | || | |
Sbjct 510 AACCAACTAATGTCTACTTCTGAAAACTCACAG-----A-GTA-T-A---GTCCAC-TAT 557
Query 307 AACTTGACAGAGGCTCTCATGTTCTTATCACATTATATGGGAGATGTTCATCAGCCCTTG 366
||||| ||||||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 558 AACTTAACAGAGGCTCTCATGTTCTTATCACATTATATGGGAGATATCCATCAGCCTTTA 617
Query 367 CAT-ACTGGTTTTCTTGGAGATCTAGGTGGTAACACA-ATAATAG-TCAACTGGTACCAT 423
||| | |||||| ||||||||||||||||||||| | |||| || || |||||||| ||
Sbjct 618 CATGA-AGGTTTTATTGGAGATCTAGGTGGTAACA-AGATAAAAGTTC-ACTGGTACAAT 674
Query 424 AACGAAACAAATTTGCACCATGTCTGGGATAACATGATAATTGACTCTGCTCTAGAAACA 483
| ||||| |||||||||| ||| |||||| | ||||||||||| |||||||||||||||
Sbjct 675 CAGGAAACTAATTTGCACCGTGTGTGGGATGATATGATAATTGAGTCTGCTCTAGAAACA 734
Query 484 TACTACAATTCAAGCCTTCCACGCATGATTCAAGCCCTTCAAGCCAAACTCAAGAACGGC 543
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 735 TACTACAATTCAAGCCTTCCACGCATGATTCATGAACTTCAAGCCAAACTCAAGAACGGC 794
Query 544 TGGTCAAATGATGTTCCGTCGTGGAAGTCATGTCA-CTTTCACCAAAAGGCCTGTCCAAA 602
|||||||| ||||| || || ||| |||||||||| ||| |||||| |||||| |||||
Sbjct 795 TGGTCAAACGATGTACCTTCATGGGAGTCATGTCAACTTA-ACCAAACGGCCTGCCCAAA 853
Query 603 TCTGTATGCTTCTGAAAGCATTGATCTCGCCTGCAAGTATGCTTACAGGAACGCTACTC- 661
|| |||||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 854 TCCGTATGCTTCTGAAAGCATTGATCTTGCCTGCAAGTATGCTTACAGGAACGCCAC-CG 912
Query 662 CAGGGACTACTTTAGGAGATGAGTATTTCCTTTCTCGGTTACCCGTTGTAGAGAAGAGAC 721
|||||||||||||||||||| | |||||| | ||||||||||| || |||||||||||||
Sbjct 913 CAGGGACTACTTTAGGAGATTACTATTTCGTCTCTCGGTTACCGGTGGTAGAGAAGAGAC 972
Query 722 TTGCACAAGGTGGGATTCGCTTGGCAGCGACTCTTAACCGTATCTTTTCTGCAAAACCGA 781
|||||||||| || ||||||||||||| |||||||||||| || ||||||||||||| ||
Sbjct 973 TTGCACAAGGCGGAATTCGCTTGGCAGGGACTCTTAACCGAATATTTTCTGCAAAACGGA 1032
Query 782 AGCTCGCTGGATTATGAAA 800
|||| ||| || ||||||
Sbjct 1033 AGCTTGCTAGAGCATGAAA 1051
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44105581066
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5