BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492718
Length=1007
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21590.1 | Symbols: ENDO3 | endonuclease 3 | chr4:11480360-1... 1472 0.0
AT4G21600.1 | Symbols: ENDO5 | endonuclease 5 | chr4:11485119-1... 857 0.0
AT4G21585.1 | Symbols: ENDO4 | endonuclease 4 | chr4:11477988-1... 765 0.0
> AT4G21590.1 | Symbols: ENDO3 | endonuclease 3 | chr4:11480360-11482719
FORWARD LENGTH=1194
Length=1194
Score = 1472 bits (797), Expect = 0.0
Identities = 934/998 (94%), Gaps = 17/998 (2%)
Strand=Plus/Plus
Query 25 ATGTGGATTGTGAGTATACTAGTGCTTACACAGCTCGTTCATGGAGCTCTCTGTTGGGGA 84
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 183 ATGTGGATTGTGAGTATACTCGTGCTTACACAGCTCGTTAATGGAGCTCTCTGTTGGGGA 242
Query 85 GACGATGGTCACTACGCTGTCTGCAAAATAGCTCAGGGTTATTTTGAGGAAGAAACTGTA 144
|||| |||||| |||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 243 GACGCTGGTCATTACGCTGTCTGCAAAATAGCTCAGAGTTATTTTGAGGAAGATACTGTA 302
Query 145 GTTGCTGTGAAGAAGCTTCTGCCTGAATCTGCAAATGGTGAGCTAGCAGCTGTTTGTTCA 204
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 303 GTTGCTGTGAAGAAACTTCTGCCTGAATCTGCAAATGGTGAGCTAGCAGCTGTTTGCTCA 362
Query 205 TGGCCTGATGAGATAAAAAAGCTCCCGCAATGGCGATGGACTAGTGCTTTGCATTTTGCT 264
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TGGCCTGATGAAATCAAAAAGCTCCCGCAATGGCGATGGACTAGTGCTTTGCATTTTGCT 422
Query 265 GATACACCTGATTACAAATGCAACTATGAGTATTCTAGGGACTGTCCTAAAGACTGGTGT 324
||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 423 GATACGCCTGATTACAAATGCAACTATGAGTACTCTCGGGACTGTCCTAAAGACTGGTGT 482
Query 325 GTGACAGGAGCAATCTTCAATTACACAAACCAACTAATGTCTGCTTCTGAAATCTCACAG 384
|||||||| ||||||||||||||||| ||||||||||||||| ||||||||| |||||||
Sbjct 483 GTGACAGGGGCAATCTTCAATTACACTAACCAACTAATGTCTACTTCTGAAAACTCACAG 542
Query 385 AGTATAGTCCGCTACAACTTGACAGAGGCTCTCATGTTCTTATCACATTATATGGGAGAT 444
|||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 543 AGTATAGTCCACTATAACTTAACAGAGGCTCTCATGTTCTTATCACATTATATGGGAGAT 602
Query 445 ATCCATCAGCTTTTACATGAAGGTTTTATTGGAGATCTAGGTGGTAACAAAATAAAAGTC 504
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 603 ATCCATCAGCCTTTACATGAAGGTTTTATTGGAGATCTAGGTGGTAACAAGATAAAAGTT 662
Query 505 CACTGGTACAATCACGAAACTAATTTGCACCGTGTGTGGGATGACATGATAATTGAGTCT 564
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 663 CACTGGTACAATCAGGAAACTAATTTGCACCGTGTGTGGGATGATATGATAATTGAGTCT 722
Query 565 GCTCTAGAAACATACTATAATTCAAGCCTTCCACGCATGATTCAAGCCCTTCAAGCCAAA 624
||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||
Sbjct 723 GCTCTAGAAACATACTACAATTCAAGCCTTCCACGCATGATTCATGAACTTCAAGCCAAA 782
Query 625 CTCAAGAACGGCTGGTCAAATGATGTACCTTCATGGGAGTCATGTCAACTTAACCAAACG 684
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 783 CTCAAGAACGGCTGGTCAAACGATGTACCTTCATGGGAGTCATGTCAACTTAACCAAACG 842
Query 685 GCCTGCCCAAATCCATATGCTTCTGAAAGCATTGATCTTGCCTGCAAGTATGCTTACAGG 744
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 GCCTGCCCAAATCCGTATGCTTCTGAAAGCATTGATCTTGCCTGCAAGTATGCTTACAGG 902
Query 745 AATGCCACCGCAGGGACTACTTTAGGAGATTACTATTTTGTCTCTCGGTTACCCGTTGTA 804
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 903 AACGCCACCGCAGGGACTACTTTAGGAGATTACTATTTCGTCTCTCGGTTACCGGTGGTA 962
Query 805 GAGAAGAGACTTGCACAAGGCGGGATTCGCTTGGC-GGCGACTCTTAACCGAATCTATTC 863
||||||||||||||||||||||| ||||||||||| || ||||||||||||||| | |||
Sbjct 963 GAGAAGAGACTTGCACAAGGCGGAATTCGCTTGGCAGG-GACTCTTAACCGAATATTTTC 1021
Query 864 TACAAAATCAAAA-CTTGCTAGAGCATGAATAAAGATCCA--A-A-TCACTTGAACATCC 918
| ||||| | || |||||||||||||||| ||||||||| | | ||||||||||||||
Sbjct 1022 TGCAAAA-CGGAAGCTTGCTAGAGCATGAAAAAAGATCCAGGAGAATCACTTGAACATCC 1080
Query 919 AAGAACACTCTTTTGTA--A-T---GTGTAATGGTAGT--T-AAGGTTATGGTTTGCTAT 969
| |||||||||| |||| | | ||||||||||||| | |||||||||||||| |||
Sbjct 1081 ATGAACACTCTTATGTATTAATAATGTGTAATGGTAGTAGTTAAGGTTATGGTTTGGTAT 1140
Query 970 TGTTCCTGAGTTTTAACTATAATAAGTATGAAACCAAA 1007
|||||||| ||||||||||||||||||||||||| |||
Sbjct 1141 TGTTCCTGCGTTTTAACTATAATAAGTATGAAACGAAA 1178
> AT4G21600.1 | Symbols: ENDO5 | endonuclease 5 | chr4:11485119-11487416
FORWARD LENGTH=1148
Length=1148
Score = 857 bits (464), Expect = 0.0
Identities = 741/871 (85%), Gaps = 34/871 (4%)
Strand=Plus/Plus
Query 26 TGTGGATTGTGAGTATACTAGTGCTTACACAGCTCGTTCATGGAGCTCTCTGTT-GGGGA 84
|||||||||||||| |||| ||||||||||| || || |||||||||||||||| |||||
Sbjct 84 TGTGGATTGTGAGTGTACTCGTGCTTACACACCTTGTCCATGGAGCTCTCTGTTGGGGGA 143
Query 85 GACGATGGTCACTACGCTGTCTGCAAAATAGCTCAGGG-TTATTTTGAGGAAGAAACTGT 143
| |||||||||||| |||| |||||| ||||| |||| || |||||||| || ||| |
Sbjct 144 -AGGATGGTCACTACACTGTTTGCAAATTAGCTGAGGGATT-CTTTGAGGATGATACTAT 201
Query 144 AGTTGCTGTGAAGAAGCTTCTGCCTGAATCTGCAAATGGT-G-AG-CTAGCAGCTGTTTG 200
| ||| |||||||| |||||||||||||| | ||||| | | ||||||| | ||||
Sbjct 202 TGCTGCAGTGAAGAAACTTCTGCCTGAATCAGTTGATGGTGGTGGACTAGCAGATTTTTG 261
Query 201 TTCATGGCCTGATGAGA-TAAAAAAGCTCCCGCAATGGCGATGGACTAGTGCTTTGCATT 259
|||||||||||||| | ||||||| ||| ||||||||| ||||||||| ||||||| |
Sbjct 262 CTCATGGCCTGATGAAATTAAAAAA-CTCTCGCAATGGCAATGGACTAGCACTTTGCACT 320
Query 260 TTGCTGATACACCTGATTACAAATGCAACTATGAGTATT-CTAGGGACTG---T----C- 310
|| | | |||||||| |||| |||||||| ||||||| | ||||||| | |
Sbjct 321 ATGTTAACACACCTGAATACAGGTGCAACTACGAGTATTGC-CGGGACTGCCATGACACT 379
Query 311 C-T----A-AA-GACTGGTGTGTGACAGGAGCAATCTTCAATTACACAAACCAACTAATG 363
| | | || |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 380 CATAAGCATAAGGACTGGTGTGTGACAGGAGCGATCTTCAATTACACAAACCAGTTAATG 439
Query 364 TCTGCTTCTGAAATCTCACAGAGTATAGTCCGCTACAACTTGACAGAGGCTCTCATGTTC 423
||||||||||||| |||||||| |||||||| |||||||||||||||||||||| |||||
Sbjct 440 TCTGCTTCTGAAAACTCACAGAATATAGTCCACTACAACTTGACAGAGGCTCTCTTGTTC 499
Query 424 TTATCACATTATATGGGAGATATCCATCAGCTTTTACATGA-AGGTTTTATTGGAGATCT 482
|| |||||||||||||||||| | ||||||| || ||| | |||||| ||||||||||
Sbjct 500 TTGTCACATTATATGGGAGATGTTCATCAGCCCTTGCAT-ACTGGTTTTCTTGGAGATCT 558
Query 483 AGGTGGTAACAAAATAAAAGTCCACTGGTACAATCACGAAA-CTAATTTGCACCGTGTGT 541
||||||||||| ||||| |||| |||||||| || || ||| | |||||||||| ||| |
Sbjct 559 AGGTGGTAACACAATAATAGTCAACTGGTACCATAAC-AAATCAAATTTGCACCATGTCT 617
Query 542 GGGATGACATGATAATTGAGTCTGCTCTAGAAACATACTATAATTCAAGCCTTCCACGCA 601
|||| ||||||||||||| |||||||||||||||||||| |||||||||||||||| ||
Sbjct 618 GGGACAACATGATAATTGACTCTGCTCTAGAAACATACTACAATTCAAGCCTTCCACACA 677
Query 602 TGATTCAAGCCCTTCAAGCCAAACTCAAGAACGGCTGGTCAAATGATGTACCTTCATGGG 661
|||||||||| ||||||||||||||||||||||||||||| |||||||| || || |||
Sbjct 678 TGATTCAAGCTCTTCAAGCCAAACTCAAGAACGGCTGGTCGAATGATGTTCCGTCGTGGA 737
Query 662 AGTCATGTCAAC-TTAACCAAACGGCCTGCCCAAATCCATATGCTTCTGAAAGCATTGAT 720
||||||||| || || |||||| |||||| ||||||| |||||||||||||||||||||
Sbjct 738 AGTCATGTC-ACTTTCACCAAAAGGCCTGTCCAAATCTGTATGCTTCTGAAAGCATTGAT 796
Query 721 CTTGCCTGCAAGTATGCTTACAGGAATGCCAC-CGCAGGGACTACTTTAGGAGATTACTA 779
|| ||||||||||||||||||||||| || || | | |||||||||||||||||| | ||
Sbjct 797 CTCGCCTGCAAGTATGCTTACAGGAACGCTACTC-CGGGGACTACTTTAGGAGATGAGTA 855
Query 780 TTTTGTCTCTCGGTTACCCGTTGTAGAGAAGAGACTTGCACAAGGCGGGATTCGCTTGGC 839
||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 856 TTTCCTTTCTCGGTTACCCGTTGTAGAGAAGAGACTTGCACAAGGTGGGATTCGCTTGGC 915
Query 840 GGCGACTCTTAACCGAATCTATTCTACAAAA 870
|| |||||||| || |||| |||| |||||
Sbjct 916 AGCTACTCTTAATCGTATCTTTTCTGCAAAA 946
> AT4G21585.1 | Symbols: ENDO4 | endonuclease 4 | chr4:11477988-11479953
FORWARD LENGTH=900
Length=900
Score = 765 bits (414), Expect = 0.0
Identities = 723/871 (83%), Gaps = 25/871 (3%)
Strand=Plus/Plus
Query 41 TACTAGTGCTTACACAGCTCGTTC-ATGGAGCTCTCTGTTGGGGAGACGATGGTCACTAC 99
|||| ||||||||||||||| || |||||||||| ||||||||| | || |||||||||
Sbjct 35 TACTCGTGCTTACACAGCTC-ATCAATGGAGCTCTGTGTTGGGGAAAAGAAGGTCACTAC 93
Query 100 GCTGTCTGCAAAATAGCTC-AGGGTTATTTTGAGGAAGAAACTGTAGTTGCTGTGAAGAA 158
| |||||||||||||| | || | || ||||||||||||||||||| ||| ||||||||
Sbjct 94 ACAGTCTGCAAAATAGC-CGAGAGCTACTTTGAGGAAGAAACTGTAGCTGCGGTGAAGAA 152
Query 159 GCTTCTGCCTGAATCTGCAAATGGTGAGCTAGCAGCTGTTTGTTCATGGCCTGATGAGAT 218
||||| ||| |||| || |||| || |||||| ||||||| |||||||||||||||||
Sbjct 153 ACTTCTACCTAAATCAGCTGATGGAGATCTAGCATCTGTTTGCTCATGGCCTGATGAGAT 212
Query 219 AAAAAAGC-TCCCGCAATGGCGATGGACTAGTGCTTTGCATTTTGCTGATACACCTGATT 277
|| | | | |||||||||||||||||| ||||||| | || ||| ||||||||||
Sbjct 213 TAAGCACCAT-TGGCAATGGCGATGGACTAGCCCTTTGCACTATGTTGACACACCTGATT 271
Query 278 ACAAATGCAACTATGAGTATTCTAGGGA----C-TG-T-C-C-T----A--AAGACTGGT 322
||| ||||||||| ||||||| | |||| | || | | | | | ||||| |||
Sbjct 272 ACAGATGCAACTACGAGTATTGTCGGGATTGCCATGATACTCATAAGAATCAAGACCGGT 331
Query 323 GTGTGACAGGAGCAATCTTCAATTACACAAACCAACTAATGTCTGCTTCTGAAATCTCAC 382
||||||||||||| || ||||||||||| | ||||| ||||| |||||||||| |||
Sbjct 332 GTGTGACAGGAGCTATTTTCAATTACACTATGCAACTTATGTCCGCTTCTGAAAACTCGG 391
Query 383 AGAGTATAGTCCGCTACAACTTGACAGAGGCTCTCATGTTCTTATCACATTATATGGGAG 442
| | |||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 392 ATACTATAGTCCACTACAACTTGACAGAGGCTCTCATGTTCTTATCACATTTTATTGGAG 451
Query 443 ATATCCATCAGCTTTTACATGAAGGTTTTATTGGAGATCTAGGTGGTAACAAAATAAAAG 502
|||| || |||| || |||| |||||| | |||||| |||||| |||| |||| ||
Sbjct 452 ATATTCACCAGCCCTTGCATGTTGGTTTTCTGGGAGATGAAGGTGGAAACACGATAACAG 511
Query 503 TCCACTGGTACAATCACGAAACTAATTTGCACCGTGTGTGGGATGACATGATAATTGAGT 562
||| ||||||| || | |||| ||||| |||| ||| |||||| |||||||||||||||
Sbjct 512 TCCGCTGGTACCGTCGCAAAACAAATTTACACCATGTCTGGGATAACATGATAATTGAGT 571
Query 563 CTGCTCT-AGAAACATACTATAATTCAAGCCTTCCACGCATGATTCAAGCCCTTCAAGCC 621
||||||| | |||||||||| ||| ||| ||||||| ||||||| |||| |||||||||
Sbjct 572 CTGCTCTTA-AAACATACTACAATAAAAGTCTTCCACTCATGATTGAAGCACTTCAAGCC 630
Query 622 AAACTCAAGAACGGCTGGTCAAATGATGTACC-TTCATGGGAGTCATGTCAACTTAACCA 680
|| || | ||||| ||||||||||||||| || || |||||||||||||||||||||||
Sbjct 631 AATCTTACGAACGACTGGTCAAATGATGTTCCATTG-TGGGAGTCATGTCAACTTAACCA 689
Query 681 AACGGCCTGCCCAAATCCATATGCTTCTGAAAGCATTGATCTTGCCTGCAAGTATGCTTA 740
||||||||| |||||||| || || ||||||||||| |||| |||||||||||||||||
Sbjct 690 AACGGCCTGTCCAAATCCGTACGCATCTGAAAGCATAAATCTAGCCTGCAAGTATGCTTA 749
Query 741 CAGGAATGCCACCGCAGGGACTACTTTAGGAGATTACTATTTTGTCTCTCGGTTACCCGT 800
||||| || ||| |||||||||||||||||||| ||||||| |||||||||||||| |
Sbjct 750 TAGGAACGCTACCCCAGGGACTACTTTAGGAGATGACTATTTCCTCTCTCGGTTACCCAT 809
Query 801 TGTAGAGAAGAGACTTGCACAAGGCGGGATTCGCTTGGCGGCGACTCTTAACCGAATCTA 860
||| |||||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||
Sbjct 810 TGTGGAGAAGAGACTTGCGCAAGGTGGGATACGCTTGGCAGCCACTCTTAACCGTATCTT 869
Query 861 TTCTACAAAATCAAAACTTGCTAGAGCATGA 891
|||| ||||| | || | |||| || |||||
Sbjct 870 TTCTTCAAAACCTAAGCATGCTGGATCATGA 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49329932354
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5