BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492719
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21585.1 | Symbols: ENDO4 | endonuclease 4 | chr4:11477988-1... 1430 0.0
AT4G21600.1 | Symbols: ENDO5 | endonuclease 5 | chr4:11485119-1... 850 0.0
AT4G21590.1 | Symbols: ENDO3 | endonuclease 3 | chr4:11480360-1... 721 0.0
> AT4G21585.1 | Symbols: ENDO4 | endonuclease 4 | chr4:11477988-11479953
FORWARD LENGTH=900
Length=900
Score = 1430 bits (774), Expect = 0.0
Identities = 859/901 (95%), Gaps = 2/901 (0%)
Strand=Plus/Plus
Query 1 ATGACTTCGTCGCTACGACTGTGGTTTGCTACAGTACTCGTGCTTACACAGCTCATCAAT 60
|||| ||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGAGTTCGTCGCTGCGACAGTGGTTTGCTAGAGTACTCGTGCTTACACAGCTCATCAAT 60
Query 61 GGAGCTCTGTGTTGGGGAAAAGAAGGCCATTACACCGTCTGCAAAATAGCCGAGAGCTAC 120
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 61 GGAGCTCTGTGTTGGGGAAAAGAAGGTCACTACACAGTCTGCAAAATAGCCGAGAGCTAC 120
Query 121 TTTGCA-GAAGAAACTGTAGCTGCAGTGAAGAAACTTTTACCTGAATCAGCTGATGGTGA 179
|||| | ||||||||||||||||| |||||||||||| ||||| ||||||||||||| ||
Sbjct 121 TTTG-AGGAAGAAACTGTAGCTGCGGTGAAGAAACTTCTACCTAAATCAGCTGATGGAGA 179
Query 180 TCTAGCATCTGTTTGCTCATGGCCTGATGAGATTAAACACCATTGGCAATGGAGATGGAC 239
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 180 TCTAGCATCTGTTTGCTCATGGCCTGATGAGATTAAGCACCATTGGCAATGGCGATGGAC 239
Query 240 TAGCCCTTTGCACTATGTTGATACACCTGATTACAGATGCAACTACGAGTATTGTCGGGA 299
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 TAGCCCTTTGCACTATGTTGACACACCTGATTACAGATGCAACTACGAGTATTGTCGGGA 299
Query 300 TTGCCATGATACTCATAAGCATCAAGACCGTTGTGTGACTGGAGCGATTTTTAATTACAC 359
||||||||||||||||||| |||||||||| |||||||| ||||| ||||| ||||||||
Sbjct 300 TTGCCATGATACTCATAAGAATCAAGACCGGTGTGTGACAGGAGCTATTTTCAATTACAC 359
Query 360 TATGCAACTTATGTCGGCTTCTGAAAACTCGCATACTATAGTCCACTACAACTTGACAGA 419
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 360 TATGCAACTTATGTCCGCTTCTGAAAACTCGGATACTATAGTCCACTACAACTTGACAGA 419
Query 420 GGCTCTAATGTTCTTATCACATTTTATCGGAGATATTCACCAGCCCTTACATGTTGGTTT 479
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 420 GGCTCTCATGTTCTTATCACATTTTATTGGAGATATTCACCAGCCCTTGCATGTTGGTTT 479
Query 480 TCTGGGAGACGAAGGTGGAAACACGATAATAGTCCGCTGGTACCGTCGCAAAACAAATTT 539
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 TCTGGGAGATGAAGGTGGAAACACGATAACAGTCCGCTGGTACCGTCGCAAAACAAATTT 539
Query 540 GCACCATGTCTGGGATAACATGATAATTGAGTCTGCTCTTAAAACATACTACAATAAAAG 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ACACCATGTCTGGGATAACATGATAATTGAGTCTGCTCTTAAAACATACTACAATAAAAG 599
Query 600 TCTTCCACTCTTTATTCAAGCACTTCAAACCAATCTTACGCACGGCTGGTCAAATGATGT 659
|||||||||| | ||| ||||||||||| ||||||||||| ||| |||||||||||||||
Sbjct 600 TCTTCCACTCATGATTGAAGCACTTCAAGCCAATCTTACGAACGACTGGTCAAATGATGT 659
Query 660 TCCGTCGTGGGAGTCATGTCAACTTAACCAAACGGCCTGTCCGAATCCGTACGCATCTGA 719
||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 TCCATTGTGGGAGTCATGTCAACTTAACCAAACGGCCTGTCCAAATCCGTACGCATCTGA 719
Query 720 AAGCATAAATCTAGCCTGCAAGTATGCTTATAGGAACGCTACCCCAGGGACTACTTTAGG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAGCATAAATCTAGCCTGCAAGTATGCTTATAGGAACGCTACCCCAGGGACTACTTTAGG 779
Query 780 AGATGACTATTTCCTCTCTCGGTTACCCATTGTGGAGAAGAGACTTGCACAAGGTGGGAT 839
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 780 AGATGACTATTTCCTCTCTCGGTTACCCATTGTGGAGAAGAGACTTGCGCAAGGTGGGAT 839
Query 840 ACGCTTGGCGGCCACTCTAAACCGTATCTTTTCTTCTAAACCTAAGCATGCTGGATCATG 899
||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 840 ACGCTTGGCAGCCACTCTTAACCGTATCTTTTCTTCAAAACCTAAGCATGCTGGATCATG 899
Query 900 A 900
|
Sbjct 900 A 900
> AT4G21600.1 | Symbols: ENDO5 | endonuclease 5 | chr4:11485119-11487416
FORWARD LENGTH=1148
Length=1148
Score = 850 bits (460), Expect = 0.0
Identities = 743/879 (85%), Gaps = 21/879 (2%)
Strand=Plus/Plus
Query 34 GTACTCGTGCTTACACAGCTCATCAATGGAGCTCTGTGTTGGGGAAAAGAAGGCCATTAC 93
||||||||||||||||| || || |||||||||| |||||||| || || || || |||
Sbjct 98 GTACTCGTGCTTACACACCTTGTCCATGGAGCTCTCTGTTGGGGGAAGGATGGTCACTAC 157
Query 94 ACCGTCTGCAAAATAGCCGAGAGCTACTTTGCA-GAAGAAACTGTAGCTGCAGTGAAGAA 152
|| || |||||| |||| ||| | | ||||| | || || ||| | ||||||||||||||
Sbjct 158 ACTGTTTGCAAATTAGCTGAGGGATTCTTTG-AGGATGATACTATTGCTGCAGTGAAGAA 216
Query 153 ACTTTTACCTGAATCAGCTGATGGTGAT---CTAGCATCTGTTTGCTCATGGCCTGATGA 209
|||| | |||||||||| |||||||| | |||||| | |||||||||||||||||||
Sbjct 217 ACTTCTGCCTGAATCAGTTGATGGTGGTGGACTAGCAGATTTTTGCTCATGGCCTGATGA 276
Query 210 GATTAAACACCAT-TGGCAATGG-AGATGGACTAGCCCTTTGCACTATGTTGATACACCT 267
|||||| | | | | ||||||| | |||||||||| |||||||||||||| | ||||||
Sbjct 277 AATTAAAAAAC-TCTCGCAATGGCA-ATGGACTAGCACTTTGCACTATGTTAACACACCT 334
Query 268 GATTACAGATGCAACTACGAGTATTGTCGGGATTGCCATGATACTCATAAGCATCAA-GA 326
|| ||||| ||||||||||||||||| ||||| |||||||| |||||||||||| || ||
Sbjct 335 GAATACAGGTGCAACTACGAGTATTGCCGGGACTGCCATGACACTCATAAGCAT-AAGGA 393
Query 327 CCGTTGTGTGACTGGAGCGATTTTTAATTACACTATGCAACTT-ATGTCGGCTTCTGAAA 385
| | |||||||| |||||||| || |||||||| | | | || ||||| ||||||||||
Sbjct 394 CTGGTGTGTGACAGGAGCGATCTTCAATTACAC-AAACCAGTTAATGTCTGCTTCTGAAA 452
Query 386 ACTCGCATACTATAGTCCACTACAACTTGACAGAGGCTCTAATGTTCTTATCACATTTTA 445
|||| || | |||||||||||||||||||||||||||||| ||||||| ||||||| ||
Sbjct 453 ACTCACAGAATATAGTCCACTACAACTTGACAGAGGCTCTCTTGTTCTTGTCACATTATA 512
Query 446 TCGGAGATATTCACCAGCCCTTACATGTTGGTTTTCTGGGAGA-CGAAGGTGGAAACACG 504
| |||||| |||| |||||||| ||| ||||||||| ||||| | | ||||| |||||
Sbjct 513 TGGGAGATGTTCATCAGCCCTTGCATACTGGTTTTCTTGGAGATCTA-GGTGGTAACACA 571
Query 505 ATAATAGTCCGCTGGTACCGTCGCAAAACAAATTTGCACCATGTCTGGGATAACATGATA 564
||||||||| |||||||| | |||| |||||||||||||||||||||| |||||||||
Sbjct 572 ATAATAGTCAACTGGTACCATAACAAATCAAATTTGCACCATGTCTGGGACAACATGATA 631
Query 565 ATTGAGTCTGCTCTTA-AAACATACTACAATAAAAGTCTTCCACTCTTTATTCAAGCACT 623
||||| |||||||| | |||||||||||||| ||| ||||||| | | |||||||| ||
Sbjct 632 ATTGACTCTGCTCT-AGAAACATACTACAATTCAAGCCTTCCACACATGATTCAAGCTCT 690
Query 624 TCAAACCAATCTTACGCACGGCTGGTCAAATGATGTTCCGTCGTGGGAGTCATGTCAACT 683
|||| |||| || | | |||||||||| |||||||||||||||||| |||||||||| ||
Sbjct 691 TCAAGCCAAACTCAAGAACGGCTGGTCGAATGATGTTCCGTCGTGGAAGTCATGTCA-CT 749
Query 684 TA-ACCAAACGGCCTGTCCGAATCCGTACGCATCTGAAAGCATAAATCTAGCCTGCAAGT 742
| |||||| ||||||||| |||| ||| || ||||||||||| |||| ||||||||||
Sbjct 750 TTCACCAAAAGGCCTGTCCAAATCTGTATGCTTCTGAAAGCATTGATCTCGCCTGCAAGT 809
Query 743 ATGCTTATAGGAACGCTACCCCAGGGACTACTTTAGGAGATGACTATTTCCTCTCTCGGT 802
||||||| ||||||||||| || |||||||||||||||||||| |||||||| |||||||
Sbjct 810 ATGCTTACAGGAACGCTACTCCGGGGACTACTTTAGGAGATGAGTATTTCCTTTCTCGGT 869
Query 803 TACCCATTGTGGAGAAGAGACTTGCACAAGGTGGGATACGCTTGGCGGCCACTCTAAACC 862
||||| |||| |||||||||||||||||||||||||| |||||||| || ||||| || |
Sbjct 870 TACCCGTTGTAGAGAAGAGACTTGCACAAGGTGGGATTCGCTTGGCAGCTACTCTTAATC 929
Query 863 GTATCTTTTCTTCTAAACCTAAGCAT-GCTGGATCATGA 900
||||||||||| | ||||| |||| | || |||| ||||
Sbjct 930 GTATCTTTTCTGCAAAACCGAAGC-TCGCAGGATTATGA 967
> AT4G21590.1 | Symbols: ENDO3 | endonuclease 3 | chr4:11480360-11482719
FORWARD LENGTH=1194
Length=1194
Score = 721 bits (390), Expect = 0.0
Identities = 717/873 (82%), Gaps = 29/873 (3%)
Strand=Plus/Plus
Query 35 TACTCGTGCTTACACAGCTCATCAATGGAGCTCTGTGTTGGGGAAAAGAAGGCCATTACA 94
|||||||||||||||||||| | ||||||||||| ||||||||| | | || ||||||
Sbjct 199 TACTCGTGCTTACACAGCTCGTTAATGGAGCTCTCTGTTGGGGAGACGCTGGTCATTACG 258
Query 95 CCGTCTGCAAAATAGC-CGAGAGCTACTTTGCA-GAAGAAACTGTAGCTGCAGTGAAGAA 152
| |||||||||||||| | |||| || |||| | ||||| ||||||| ||| ||||||||
Sbjct 259 CTGTCTGCAAAATAGCTC-AGAGTTATTTTG-AGGAAGATACTGTAGTTGCTGTGAAGAA 316
Query 153 ACTTTTACCTGAATCAGCTGATGGTGATCTAGCATCTGTTTGCTCATGGCCTGATGAGAT 212
|||| | |||||||| || ||||||| |||||| |||||||||||||||||||||| ||
Sbjct 317 ACTTCTGCCTGAATCTGCAAATGGTGAGCTAGCAGCTGTTTGCTCATGGCCTGATGAAAT 376
Query 213 TAAACACCAT-TGGCAATGGAGATGGACTAGCCCTTTGCACTATGTTGATACACCTGATT 271
||| | | | ||||||| |||||||||| ||||||| | || |||||| |||||||
Sbjct 377 CAAAAAGC-TCCCGCAATGGCGATGGACTAGTGCTTTGCATTTTGCTGATACGCCTGATT 435
Query 272 ACAGATGCAACTACGAGTATTGTCGGGATTGCCATGATACTCATAAGCATCAAGACCGTT 331
||| ||||||||| ||||| | |||||| | || | | | | | ||||| | |
Sbjct 436 ACAAATGCAACTATGAGTACTCTCGGGA----C-TG-T-C-C-T----A--AAGACTGGT 480
Query 332 GTGTGACTGGAGCGATTTTTAATTACACTATGCAACTTATGTCGGCTTCTGAAAACTCGC 391
||||||| || || || || |||||||||| ||||| ||||| ||||||||||||| |
Sbjct 481 GTGTGACAGGGGCAATCTTCAATTACACTAACCAACTAATGTCTACTTCTGAAAACTCAC 540
Query 392 ATACTATAGTCCACTACAACTTGACAGAGGCTCTAATGTTCTTATCACATTTTATCGGAG 451
| | |||||||||||| ||||| ||||||||||| |||||||||||||||| ||| ||||
Sbjct 541 AGAGTATAGTCCACTATAACTTAACAGAGGCTCTCATGTTCTTATCACATTATATGGGAG 600
Query 452 ATATTCACCAGCCCTTACATGTTGGTTTTCTGGGAGA-CGAAGGTGGAAACACGATAATA 510
|||| || ||||| ||||||| |||||| | ||||| | |||||| |||| ||||| |
Sbjct 601 ATATCCATCAGCCTTTACATGAAGGTTTTATTGGAGATC-TAGGTGGTAACAAGATAAAA 659
Query 511 GTCCGCTGGTACCGTC-GCAAAACAAATTTGCACCATGTCTGGGATAACATGATAATTGA 569
|| | ||||||| || | |||| |||||||||| ||| |||||| | |||||||||||
Sbjct 660 GTTCACTGGTACAATCAG-GAAACTAATTTGCACCGTGTGTGGGATGATATGATAATTGA 718
Query 570 GTCTGCTCTTA-AAACATACTACAATAAAAGTCTTCCACTCTTTATTCAAGCACTTCAAA 628
|||||||| || |||||||||||||| ||| ||||||| | | ||||| | |||||||
Sbjct 719 GTCTGCTC-TAGAAACATACTACAATTCAAGCCTTCCACGCATGATTCATGAACTTCAAG 777
Query 629 CCAATCTTACGCACGGCTGGTCAAATGATGTTCCGTCGTGGGAGTCATGTCAACTTAACC 688
|||| || | | ||||||||||||| ||||| || || ||||||||||||||||||||||
Sbjct 778 CCAAACTCAAGAACGGCTGGTCAAACGATGTACCTTCATGGGAGTCATGTCAACTTAACC 837
Query 689 AAACGGCCTGTCCGAATCCGTACGCATCTGAAAGCATAAATCTAGCCTGCAAGTATGCTT 748
|||||||||| || |||||||| || ||||||||||| |||| ||||||||||||||||
Sbjct 838 AAACGGCCTGCCCAAATCCGTATGCTTCTGAAAGCATTGATCTTGCCTGCAAGTATGCTT 897
Query 749 ATAGGAACGCTACCCCAGGGACTACTTTAGGAGATGACTATTTCCTCTCTCGGTTACCCA 808
| |||||||| ||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 898 ACAGGAACGCCACCGCAGGGACTACTTTAGGAGATTACTATTTCGTCTCTCGGTTACCGG 957
Query 809 TTGTGGAGAAGAGACTTGCACAAGGTGGGATACGCTTGGC-GGCCACTCTAAACCGTATC 867
| || |||||||||||||||||||| || || |||||||| || ||||| ||||| ||
Sbjct 958 TGGTAGAGAAGAGACTTGCACAAGGCGGAATTCGCTTGGCAGGG-ACTCTTAACCGAATA 1016
Query 868 TTTTCTTCTAAACCTAAGCATGCTGGATCATGA 900
|||||| | |||| |||| |||| || |||||
Sbjct 1017 TTTTCTGCAAAACGGAAGCTTGCTAGAGCATGA 1049
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43954878625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5