BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492720
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21580.1 | Symbols: | oxidoreductase, zinc-binding dehydrog... 1655 0.0
> AT4G21580.1 | Symbols: | oxidoreductase, zinc-binding dehydrogenase
family protein | chr4:11475719-11477768 FORWARD LENGTH=1335
Length=1335
Score = 1655 bits (896), Expect = 0.0
Identities = 1088/1177 (92%), Gaps = 27/1177 (2%)
Strand=Plus/Plus
Query 1 AAGAAGAAGACTTGCATACGGAAGCTT--GAGAATGAAAGCGATCGTGATCTCGGAGCCA 58
||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 71 AAGAAGAGGACTTGAATACGGAAGCTTGAGAGAATGAAAGCGATCGTGATCTCGGAGCCA 130
Query 59 GGTAAGCCAGAGGTTCTGCAACTGTGTGATGTGGCAGATCCAGAAGTCAAGGACGATGAG 118
|||||||| |||||||||||||| ||||||||||||| |||||||| || |||||||||
Sbjct 131 GGTAAGCCGGAGGTTCTGCAACTCCGTGATGTGGCAGACCCAGAAGTTAAAGACGATGAG 190
Query 119 GTTCTCATCAGAGTTCTCGCCACTGCTTTGAATCGTGCCGATACTCTCCAAAGACTTGGC 178
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 191 GTTCTCATCAGAGTTCTCGCTACTGCTTTGAATCGTGCAGATACTCTCCAAAGACTTGGC 250
Query 179 CTTTACAATCCACCACCTGGCTCAAGCCCTTACCTTGGTCTCGAGTGTTCTGGAACCATT 238
||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 251 CTTTATAATCCACCACCTGGCTCAAGCCCTTACCTTGGTCTCGAATGTTCTGGGACCATT 310
Query 239 GAATCTGTTGGCAAAAACGTCTCTCGATGGAAGGTTGGAGACCAGGTGTGTGCTCTTCTT 298
||||| || || ||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct 311 GAATCCGTCGGTAAAGGCGTCTCTCGATGGAAAGTCGGAGACCAGGTGTGTGCTCTTCTT 370
Query 299 TCTGGAGGAGGTTATGCAGAGAAAGTCTCTGTTCCTGCTGGACAAATTTTCCCAATACCC 358
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 371 TCTGGAGGAGGTTATGCAGAGAAAGTTTCTGTTCCTGCTGGACAAATTTTCCCAATTCCC 430
Query 359 GCTGGTATCTCTCTTAAA-GATGCAACGGCTTTCCCTGAAGTGGCATGCACTGTTTGGTC 417
||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 431 GCTGGTATCTCTC-TAAAGGATGCAGCGGCTTTCCCTGAAGTGGCATGCACTGTTTGGTC 489
Query 418 TACTGTCTTCATGATGGGCCGTCTCTCCGCTGGTGAATCATTCTTGGTTCATGGAGGTTC 477
||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||
Sbjct 490 TACTGTCTTCATGATGGGCCGTCTCTCTGTTGGTGAATCATTCTTGATTCATGGAGGTTC 549
Query 478 AAGTGGGATTGGGACTTTTGCAATTCAGATAGCTAAACATCTAGGAGTGAGAGTATTTGT 537
||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 550 AAGTGGGATTGGGACATTTGCTATTCAGATAGCTAAACATCTGGGAGTGAGAGTATTTGT 609
Query 538 AACAGCAGGGAATGAGGAAAAGCTAGCTGCCTGCAAAGAACTTGGGGCTGATGTTTGTAT 597
||||| |||| ||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 610 CACAGCTGGGAGTGATGAAAAGCTAGCTGCGTGCAAAGAACTCGGGGCTGATGTTTGTAT 669
Query 598 AAATTACAAAACCGAGGACTTTGTCGCAAAGGTAAAAGCGGAAACTGATGGGAAAGGTGT 657
|||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 670 AAATTACAAAACCGAGGATTTTGTTGCAAAGGTAAAAGCGGAAACCGATGGGAAAGGAGT 729
Query 658 GGATGTTATCTTGGACTGCATTGGGGCACCGTATTTGCAGAAAAACCTCGACAGCTTAAA 717
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 730 GGATGTTATCTTGGACTGCATTGGGGCACCGTATTTGCAGAAAAATCTCGACAGCTTAAA 789
Query 718 -TTTCGATGGTAGGTTATGTATTATCGGATTAATGGGAGGAGCCAATGCAGAAATAAAAC 776
||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 790 CTTT-GATGGAAGGTTATGTATTATCGGTTTAATGGGAGGAGCCAATGCAGAAATAAAAC 848
Query 777 TAAGTAGTCTGCTTCCAAAGCGTCTCACTGTCTTAGGAGCTGCGTTAAGACCAAGAAGCC 836
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 849 TAAGTAGTCTGCTTCCAAAGCGTCTCACTGTCTTAGGAGCTGCATTAAGACCAAGAAGCC 908
Query 837 CTGAAAACAAAGCGGTTGTTGTA-GCAGAAGTCGAGAAGAATGTGTGGCCAGCGATAGAA 895
||||||||||||| ||||||||| | ||||||||||||||||| |||||||||||||||
Sbjct 909 CTGAAAACAAAGCAGTTGTTGTAAGG-GAAGTCGAGAAGAATGTCTGGCCAGCGATAGAA 967
Query 896 GCGGGGAAGGTAAAACCGGTGATTCACAAGTATTTACCATTGTCACAAGCAGCAGAAGCT 955
|| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
Sbjct 968 GCAGGGAAGGTAAAACCAGTGATTTACAAGTATTTACCATTGTCACAAGCAGCAGAAGGT 1027
Query 956 CATAGCCTTATGGAGAGTAGCAAACACATTGGTAAGATTCTGCTTGAGACCTGATCCTCT 1015
||||||||||||||||||||||| || |||||||||||||| |||||||| |||| ||||
Sbjct 1028 CATAGCCTTATGGAGAGTAGCAACCATATTGGTAAGATTCTCCTTGAGACTTGATTCTCT 1087
Query 1016 GGAAAGGGAGAAATGTTCAGAGACAAGAGTCATGGTGAATAATCAATAAAATCTGGTCAA 1075
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1088 GCAAAGGGAGAAATGTTCAGAGACAAGAGTCATGGTCAATAATCAATAAAATCTGGTCGA 1147
Query 1076 CTGTGTTCATAGATAT-T--------G--TT-TGTT-G--G-CTTTCT-T-TATCTCTGA 1117
| ||||||||||||| | | || |||| | | |||| | | |||||||||
Sbjct 1148 TTCTGTTCATAGATATCTCTTTACAAGAGTTCTGTTTGTTGGCTTT-TATGTATCTCTGA 1206
Query 1118 TTTGTTCAAAAAGACAATGTAACTATGGAACATATAT 1154
|||| ||||||||||| ||||||||||||||||||||
Sbjct 1207 TTTGGTCAAAAAGACACTGTAACTATGGAACATATAT 1243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56626214760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5