BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492722
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21570.1 | Symbols: | Protein of unknown function (DUF300) ... 1781 0.0
> AT4G21570.1 | Symbols: | Protein of unknown function (DUF300)
| chr4:11470883-11472981 REVERSE LENGTH=1380
Length=1380
Score = 1781 bits (964), Expect = 0.0
Identities = 1083/1140 (95%), Gaps = 9/1140 (1%)
Strand=Plus/Plus
Query 1 ACAAATCCGTGTGGGCGAATCAGAGTCTCACATGTAGACCAATGCCGAC-T-TGGTTATG 58
||||| |||||||| |||||||||| |||||||| |||||||||||| | | |||||
Sbjct 3 ACAAAACCGTGTGGACGAATCAGAGAGACACATGTATACCAATGCCGACTTCTTTTTATG 62
Query 59 CAATCGTAGCGTCTCACTCACGTGGTAAACGCGTCGCCAtttttttAATATGACCACGTT 118
||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 63 CAATCGTAGCGTCTCTCTCACGTGGTAAACGCGTCGCCATTTTTATAATACGACCACGTT 122
Query 119 TGTGACTCCATTAATGGCGGTCTCGTGCTCCCTCAATTCTTCATGA--T--CTACTAAGA 174
|||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||
Sbjct 123 TGTGACTCCATTAATGGCGGTCTCATGCTCCCTCAATTCTTCATGATCTAACTACTAAGA 182
Query 175 GATCTGATTCAC-TTCTTCACACTCTCTCTTAGTCTCATCTTCGCTTCTTCCCTAGCTCT 233
|||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 183 GATCTGATTCACTTTCTTCACACTCTC-C-GAGTCTCATCTTCGCTTCTTCCCTAGCTCT 240
Query 234 TATGTGGAAACAATGATGGACCTAACGAAACTGAAACCTCCGCAGATCACTTTTTATTGC 293
||| |||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 241 TATCTGGACACAATGATGGACCTAACGAAACTGAAGCCTCCACAGATCACTTTTTATTGC 300
Query 294 TCGGCGTTTTCCGTCTTGCTCACAGTTCATTTCACGATACAGCTTGTGTCGCAGCATCTC 353
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 301 TCGGCGTTTTCCGTCTTGCTCACACTTCATTTCACGATACAGCTTGTATCGCAGCATCTC 360
Query 354 TTTCACTGGAAGAACCCTAAGGAACAGAAGGCTATTCTCGTTATTGTTCTTATGGCTCCT 413
|| ||||||||||||||||||||||| |||||||| ||| | ||||| ||||||||||||
Sbjct 361 TTCCACTGGAAGAACCCTAAGGAACAAAAGGCTATACTCATCATTGTGCTTATGGCTCCT 420
Query 414 ATCTACGCCGTTGTTTCCTTTATTGGTTTGTTAGAAGTCAAAGGAAGTGAAACCTTCTTC 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATCTACGCCGTTGTTTCCTTTATTGGTTTGTTAGAAGTCAAAGGAAGTGAAACCTTCTTC 480
Query 474 TTGTTTCTTGAATCCATCAAGGAATGCTATGAAGCTCTCGTCATTGCCAAATTCTTGGCA 533
| ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 481 CTCTTTCTTGAATCCATCAAAGAATGCTACGAAGCTCTTGTCATTGCCAAATTCTTGGCA 540
Query 534 TTGATGTATAGTTATTTAAACATATCTATGAGCAAAAACATTTTGCCTGATGGAATCAAA 593
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTGATGTATAGTTATCTAAACATATCTATGAGCAAAAACATTTTGCCTGATGGAATCAAA 600
Query 594 GGAAGAGAGATTCACCATTCTTTCCCAATGACTCTTTTCCAGCCTCATGTAGTCCGTTTG 653
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 601 GGAAGAGAGATTCACCATTCTTTCCCAATGACTCTTTTTCAGCCTCATGTAGTCCGTTTG 660
Query 654 GATCATCACACTCTTAAACTTTTGAAATACTGGACATGGCAATTTGTGGTCATTCGACCA 713
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GATCGTCACACTCTTAAACTTTTGAAATACTGGACATGGCAATTTGTGGTCATTCGACCC 720
Query 714 GTGTGCTCCACTTTGATGATAGCTTTACAACTCATTGGGTTTTATCCTTCTTGGTTGAGC 773
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 721 GTGTGCTCCACTTTGATGATAGCTTTACAGCTCATCGGGTTTTATCCTTCATGGTTGAGC 780
Query 774 TGGACATTCACTATCATTGTCAATTTCTCGGTTTCTCTGGCGTTGTATTCTCTTGTGATA 833
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 781 TGGACATTCACTATCATTGTCAATTTCTCGGTTTCTCTGGCCTTGTATTCTCTTGTGATA 840
Query 834 TTCTACCATGTGTTTGCTAAGGAGCTTGCTCCTCATAATCCACTCGCAAAGTTCCTCTGC 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TTCTACCATGTGTTTGCTAAGGAGCTTGCTCCTCATAATCCACTCGCAAAGTTCCTCTGC 900
Query 894 ATCAAAGGAATTGTCTTCTTTGTCTTTTGGCAGGGAATAGCACTAGACATTCTGGTGGCA 953
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 901 ATCAAAGGAATTGTCTTCTTTGTCTTTTGGCAGGGAATAGCACTAGACATACTGGTGGCA 960
Query 954 ATGGGATTCATCAAATCTCACCATTTCTGGCTGGAGGTAGAGCAAATCCAAGAAGCAATT 1013
||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 961 ATGGGATTCATAAAATCTCACCATTTCTGGTTGGAGGTAGAACAAATCCAAGAAGCAATT 1020
Query 1014 CAGAATGTGTTGGTATGTCTTGAGATGGTTATCTTCGCTGTGGTTCAGAAGCATGCTTAT 1073
|||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||
Sbjct 1021 CAGAATGTGTTGGTATGTCTTGAGATGGTTATCTTCGCTGCGGTTCAGAAACACGCTTAT 1080
Query 1074 AATGCTGGTCCTTATAGCGGTGAGACCAAGAAGAAACTCGATAAAAAGACAGAATGATTT 1133
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1081 CATGCTGGTCCTTATAGCGGCGAGACCAAGAAGAAACTCGATAAAAAGACCGAATGATTT 1140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59387244735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5