BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492725
Length=1223
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21560.1 | Symbols: VPS28-1 | vacuolar protein sorting-assoc... 1869 0.0
> AT4G21560.1 | Symbols: VPS28-1 | vacuolar protein sorting-associated
protein 28 homolog 1 | chr4:11468761-11470533 REVERSE
LENGTH=1323
Length=1323
Score = 1869 bits (1012), Expect = 0.0
Identities = 1169/1240 (94%), Gaps = 30/1240 (2%)
Strand=Plus/Plus
Query 1 TGGCTCTCTGCTCGAGCGATTCTCTCTGATAACCCGATTGTCAACTCCACAGGTCACAGA 60
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 33 TGGCTCTCTGCTCGAACGATTCTCTCTGATAACCCGATTGTCAACTCCACAGCCCACAGA 92
Query 61 TAGAGACAGAGTTCGTTGCCTTGCCTCCGTGTTGTTTTGTTCATACCGCGTG-AAAGC-- 117
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 93 CAGAGACAGAGTTCGTTGCCTTGCCTCCGTGTTGTTTTGTTCATACCGCGTGAAAAGCTT 152
Query 118 T--T--TC-A-TCATCATCATAAAGAGGTGTCGTGTGAGCACACGCAATCT-CCAAtctc 170
| | || | |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 153 TCATCATCAATTCATCATCATAAAGAGGTGTCGTGTGAGCACACGCAATCTCCCAATCTC 212
Query 171 tcttctctctctctctctcCAATCTCCATATCTTTCTCCTC--TAATCCGGAGAAGTAGC 228
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 213 TCTTCTCTCTCTCTCTCTCCAATCTCCATATCTTTGTCCTCTATAATCCGGAGAAGTAGC 272
Query 229 TCCACCATCGAAATCTCCCAACTTGCTTCCTTGTAGGAAGCtttttgctttttgttttCG 288
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 273 TCTACCATCGAAATCTCCCAACTTGCTTCCTTCTAGGAAGCTTTTTGCTTTTTGTTTTCG 332
Query 289 TCATTGCGCGTGTCCCATTCTCTTCTCCATAGTTCCCTAT-ATACTGAAAGCTCATCAAG 347
|| |||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct 333 TCTTTGCGCGTGTCCCATTCTCTTCTCCAAAGTTCCCTATAATAGTGAAAGCTCATCAAG 392
Query 348 TTATTATTAGCTAGCTCTCAGTTTCTGAAAGATGGAGGTCAAGTTATGGAATGATAAGCG 407
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 ---TTATT---TAGCTCTCAGTTTCTGAAAGATGGAGGTCAAGTTATGGAATGATAAGCG 446
Query 408 TGAGAGAGAAATGTATGAGAATTTCGCAGAGCTTTATGCTATCATCAAAGCTACTGAGAA 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 TGAGAGAGAAATGTATGAGAATTTCGCAGAGCTTTATGCTATCATCAAAGCTACTGAGAA 506
Query 468 GCTCGAGAAGGCTTATATCCGTGATCTGATCTCTCCATCTGAATACGAAACCGAGTGCCA 527
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 507 GCTCGAGAAGGCTTATATTCGTGATCTAATCTCTCCATCTGAATACGAAACCGAGTGCCA 566
Query 528 GAAACTCATTGTCCACTTCAAGACATTATCTGCATCGCTCAAGGATATGGTCCCAAACAT 587
|||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 567 GAAACTCATTGTTCACTTCAAGACATTATCTGCATCTCTCAAAGATATGGTCCCAAACAT 626
Query 588 TGAAAGATTTGCAGAGACGTACAAAATGGATTGCTCAGCTGCAGTTTATCGCCTTGTCAC 647
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 627 TGAGAGATTTGCAGAGACGTACAAGATGGATTGCTCAGCTGCAGTTTATCGCCTTGTGAC 686
Query 648 TTCTGGTGTTCCTGCTACTGTGGAGCATCGAGCTGCTGCTTCTGCTTCTACATCAAGCTC 707
|||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 687 TTCTGGTGTTCCAGCTACTGTGGAGCATAGAGCTGCTGCTTCGGCTTCTACATCAAGCTC 746
Query 708 TGCTTCTGTTGTTGCTGAGTGTGTTCAGAACTTTATCACTTCCATGGATTCTCTGAAACT 767
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 747 TGCTTCTGTTGTTGCTGAGTGTGTTCAGAACTTCATCACTTCCATGGATTCTTTGAAACT 806
Query 768 CAACATGGTTGCTGTTGATCAGGTGTATCCGTTGTTGTCTGATCTCTCGGCTTCTCTTAA 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 CAACATGGTTGCTGTTGATCAGGTGTATCCGTTGTTGTCTGATCTCTCGGCTTCTCTTAA 866
Query 828 CAAACTAAGTATTTTGCCACCGGATTTCGAGGGGAAGATTAAGATGAAGGAATGGCTTCT 887
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 867 CAAACTAAGTATATTGCCACCAGATTTCGAGGGGAAGATTAAGATGAAGGAATGGCTTTT 926
Query 888 GAGGCTGTCAAAGATGGGAGCTTCAGATGAGCTCACTGAGCAGCAAGCAAGGCAACTTCA 947
|||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 927 GAGGCTGTCAAAGATGGGAGCTTCAGATGAACTCACTGAGCAGCAGGCTCGGCAACTTCA 986
Query 948 CTTTGACCTTGAGTCATCCTATAACTCGTTCATGGCTGCTTTGCCTAACGCTGGTAATTG 1007
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 987 CTTTGATCTTGAGTCATCCTATAACTCGTTCATGGCTGCTTTGCCTAATGCTGGTAATTA 1046
Query 1008 ACCGACGTGCCACTAGAGAAC-GATGTGTGTTCGGTTTATTTTGTTTGACTT-GGCTTTA 1065
||||| ||||||||||||| | ||||||||||||||||||||||||| | || |||||||
Sbjct 1047 ACCGATGTGCCACTAGAGA-CTGATGTGTGTTCGGTTTATTTTGTTT-AGTTTGGCTTTA 1104
Query 1066 TGTAGTTATAATGATGGCTTTTAGGA-CAATGATTTTTGTTTCAAGACAATTTGCTACAT 1124
||||||||||||||||||||| |||| ||| ||||||||||||| |||||||||||||||
Sbjct 1105 TGTAGTTATAATGATGGCTTT-AGGAACAAAGATTTTTGTTTCATGACAATTTGCTACAT 1163
Query 1125 ACATTTTGGGGATGAATGTTCGTAGTAGGCAGAACAAGCTTTTCCTTTTGTTGTGTAAAA 1184
| ||||||||||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 1164 ATATTTTGGGGATGAATGTTCGTAG-A--CAAAACAAGCTTTTCCTTTTGTTGTGTAAAA 1220
Query 1185 GATCATGCCAATCCAGAAAATTGTTTTTT-CATGAAATGT 1223
||| ||||||||||||||| ||||||||| |||||| |||
Sbjct 1221 GATGATGCCAATCCAGAAA-TTGTTTTTTTCATGAAGTGT 1259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60090052365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5