BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492732
Length=1346
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21520.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2250 0.0
> AT4G21520.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:11447434-11450443 REVERSE LENGTH=1424
Length=1424
Score = 2250 bits (1218), Expect = 0.0
Identities = 1293/1329 (97%), Gaps = 5/1329 (0%)
Strand=Plus/Plus
Query 1 GACTGGGGTTTAGAACGAAAGTACA-C-CTCTCTGCTGCTTTTTTCGAGAAGCTCTGACG 58
||||||||||||||||||||||| | | |||||||||||||||||| |||||||||||||
Sbjct 1 GACTGGGGTTTAGAACGAAAGTAAACCTCTCTCTGCTGCTTTTTTCCAGAAGCTCTGACG 60
Query 59 AAGAAGATGGGTGAAGAAGAAGCAGTAGCCGAAGAAAATGGTGGACTTAAGGTAGAATCA 118
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 AAGAAGATGGGTGAAGAAGAAGCAGTAGCAGAAGAAAATGGTGGACTTAAGGTAGAATCA 120
Query 119 GGAGAACAAAACTCATCCTGGCCTACTATGAGATTCGATGTCTCTCCTTATAGAACGCAC 178
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GGAGAACAAAAATCATCCTGGCCTACTATGAGATTTGATGTCTCTCCTTATAGAACGCAC 180
Query 179 CATTTCTCTAAGCAGTTCAGGACCGCTCGAAACCCTAATAATTTCCTCAAGGGTCTTAAA 238
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 CATTTCTCTAAGCAGTTCAGGACAGCTCGAAACCCTAATAATTTCCTCAAGGGTCTTAAG 240
Query 239 TGGTCACCTGATGGTTCATGTTTCCTTGCAAGCTCTGAGGATAATACACTTAGTCTGTTT 298
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 TGGTCACCTGATGGTTCATGTTTCCTTGCAAGCTCTGAAGATAATACACTTAGTCTGTTT 300
Query 299 CATCTGCCACAAGATGGAGGGGATTCTATTGGCTATGGAGTGCCAGTCCCTGAAGAAGAT 358
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 CATCTGCCACAAGATGGAGGGGATTCTAATGGCTATGGAGTGCCAGTCCCTGAAGAAGAT 360
Query 359 TCGTATGGTGCGAGTCTTCTTGTGAATGAGGGTGAATCTATCTATGATTTCTGTTGGTAT 418
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 361 TCGTATGGTGCGAGTCTTCTAGTGAATGAGGGTGAATCTGTCTATGATTTCTGTTGGTAT 420
Query 419 CCTTACATGTCAGTCTCAGACCCTTTAACATGCGTCTTCGCTACCTCCACTAGAGACCAT 478
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCATACATGTCAGTTTCAGACCCTTTAACATGCGTCTTCGCTACCTCCACTAGAGACCAT 480
Query 479 CCGATACATCTTTGGGATAGTACTTCTGGTGAGCTTCGATGCACATACCGGGCCTATGAT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCGATACATCTTTGGGATAGTACTTCTGGTGAGCTTCGATGCACATACCGGGCCTATGAT 540
Query 539 GCTATGGATGAAATAACTGCTGCATTTTCAGTTGGATTCAATCCTCATGGAACCAAGATC 598
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 541 GCTATGGATGAAATAACTGCTGCATTTTCAGTTGGATTCAATCCTGATGGAACCAAGATC 600
Query 599 TTTGCTGGTTACAACAGCTTCATCAGAGTGTTTGATCTTCATCGTCCTGGAAGAGATTTT 658
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTTGCTGGTTACAACAGCTCCATCAGAGTGTTTGATCTTCATCGTCCTGGAAGAGATTTT 660
Query 659 GGGCAGTATTCAACTCTACAGAAAAACAAAGAGGGCCAAGCAGGTATATTATCTACTCTT 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGGCAGTATTCAACTCTACAGAAAAACAAAGAGGGCCAAGCAGGTATATTATCTACTCTT 720
Query 719 GCTTTCTCCCCAACTAATTCTGGAATGTTGGCTGTGGGGTCTTACGGGCAGACTACTGGG 778
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 721 GCTTTCTCCCCAACTAATTCTGGAATGTTGGCTGTGGGGTCTTACGGGCAAACTACTGGG 780
Query 779 ATTTATAGAGAAGACAACATGGAGCTATTGTATGTTTTACATGGTCAAGAAGGCGGTGTT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ATTTATAGAGAAGACAACATGGAGCTATTGTATGTTTTACATGGTCAAGAAGGCGGTGTT 840
Query 839 ACACATGTCCAGTTTTCAAAGGATGGGAACTATTTATATACAGGAGGTCGCAAGGATCCT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ACACATGTCCAGTTTTCAAAGGATGGGAACTATTTATATACAGGAGGTCGCAAGGATCCT 900
Query 899 TACATTCTTTGCTGGGATATTCGGAAATCTGTTGAGATAGTCTATAAATTGTACAGAGCA 958
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 TACATTCTTTGCTGGGATATTCGGAAATCTGTTGAAATAGTCTATAAATTGTACAGAGCA 960
Query 959 ACTGAGAACACAAACCAGCGTGTATTCTTTGATATTGAGCCATGTGGTCGACATTTAGGT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ACTGAGAACACAAACCAGCGTGTATTCTTTGATATTGAGCCATGTGGTCGACATTTAGGT 1020
Query 1019 ACCGGTGGTCAGGATGGGCTTGTTCACATGTACGATTTACAAACCGGAAACTGGGTTTCT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ACCGGTGGTCAGGATGGGCTTGTTCACATGTACGATTTACAAACCGGAAACTGGGTTTCT 1080
Query 1079 GGATATCAAGCTGCTTCAGATACCGTCAATGCCTTCTCTTTCCACCCATACCTTCCAATG 1138
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1081 GGATATCAAGCTGCTTCAGATACCGTCAATGCTTTCTCTTTCCACCCTTACCTTCCAATG 1140
Query 1139 GCTGCTACATCCTCTGGTCACAGACGTTTCGCAATTCCAGATGATGACGATG---AAGAT 1195
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1141 GCTGCTACATCCTCTGGTCACAGACGTTTCGCAATTCCAGATGATGACGATGGTGAAGAT 1200
Query 1196 AAGAAGGATCTTCAATTAAAAGCTGATGAAAACTGTGTATCTCTCTGGAGTTTCTACGTA 1255
||||| || |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1201 AAGAACGAGCTTCAATTGAAAGCTGATGAGAACTGTGTATCTCTCTGGAGTTTCTACGTA 1260
Query 1256 GAGAACAACACTTATGATGAAAACAATTGCGTTACAAGCAAGTCTCATCTCCAAAATGTC 1315
||| |||| |||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 1261 GAGGACAATACTTATGATGAAAACAATGGCGTTGCAAGCGAGTCTCATCTCCAAAATGTC 1320
Query 1316 ACAGGAGAA 1324
|| | ||||
Sbjct 1321 ACCGAAGAA 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66264719400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5