BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492734
Length=1650
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21490.1 | Symbols: NDB3 | NAD(P)H dehydrogenase B3 | chr4:1... 2645 0.0
AT4G05020.2 | Symbols: NDB2 | NAD(P)H dehydrogenase B2 | chr4:2... 1441 0.0
> AT4G21490.1 | Symbols: NDB3 | NAD(P)H dehydrogenase B3 | chr4:11436495-11439326
REVERSE LENGTH=1743
Length=1743
Score = 2645 bits (1432), Expect = 0.0
Identities = 1581/1654 (96%), Gaps = 5/1654 (0%)
Strand=Plus/Plus
Query 1 GGTGGAGGACTTATAGTCTACTCTGAGGCAAATGCATCATATAGCAACAATGGTGTTGAA 60
||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 91 GGTGGGGGACTTATAGTTTACTCTGAGGCAAATCCATCATATAGCAACAATGGTGTTGAA 150
Query 61 ACTGAAACCAGAAAGAAAAAAGTAGTGTTGCTCGGAACTGGATGGGCTGGAGCAAGTTTC 120
||| ||||||| |||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 151 ACTAAAACCAGGAAGAGAAAAGTAGTGCTGCTCGGAACTGGATGGGCTGGAGCAAGTTTT 210
Query 121 TTGAAGACTCTGAATAACTCTTCTTATGAGGTTCAGGTTATATCGCCTCGAAACTACTTT 180
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 211 TTGAAGACTTTGAATAACTCTTCTTATGAGGTTCAGGTTATATCTCCTCGAAACTACTTT 270
Query 181 GCTTTCACTCCCTTGTTACCTAGTGTTACTTGCGGAACTGTTGAAGCTCGCAGTGTTGTT 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 271 GCTTTCACTCCCTTGTTACCTAGTGTTACTTGTGGAACTGTTGAAGCTCGCAGCGTTGTT 330
Query 241 GAACCTATCCGCAACATTGGAAG-AA--AGAATGTTGAGATGTCTTTCTTGGAGGCAGAA 297
|||||||| |||||||||| ||| || ||||||||||||||||||||||||||||||||
Sbjct 331 GAACCTATTCGCAACATTGCAAGAAAGCAGAATGTTGAGATGTCTTTCTTGGAGGCAGAA 390
Query 298 TGTGTT-AAAATTGATCCTCGAAGCAAGAAAGTTTACTGTCGATCCAAACAAGGCGTGAA 356
||| || ||||||||||| ||||||||||||||||||| ||||| ||||||||||||||
Sbjct 391 TGT-TTCAAAATTGATCCAGGAAGCAAGAAAGTTTACTGCCGATCAAAACAAGGCGTGAA 449
Query 357 TTCGAACGGGAAGAGAGAATTTGATGTTGACTATGATTACCTTGTAATTGCTACTGGAGC 416
|||||| ||||||| ||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 450 TTCGAAAGGGAAGAAAGAGTTTGATGTTGACTATGACTACCTTGTAATCGCTACTGGAGC 509
Query 417 TCAGTCAAACACATTTAATATTCCAGGGGTGGAGGAGAACTGTCATTTCCTCAAAGAGGT 476
|||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 510 TCAGTCTAACACATTTAACATTCCTGGCGTGGAGGAGAACTGTCATTTCCTCAAAGAGGT 569
Query 477 TGAAGATGCACAGAGAATCCGTAGCACTGTCATTGATTCATTTGAGAAGGCAAGTTTACC 536
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 570 TGAAGATGCACAGAGAATTCGTAGTACTGTCATTGATTCATTTGAGAAGGCAAGTTTACC 629
Query 537 GGGACTAAACGAAGAAGAGAGAAAGAGAATGCTACATTTTGTAGTTGTTGGTGGTGGACC 596
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 TGGACTAAACGAACAAGAGAGAAAGAGAATGCTACATTTTGTAGTTGTTGGTGGTGGACC 689
Query 597 AACCGGTGTTGAGTTTGCTTCTGAGCTTCATGATTTTGTTAACGAGGATTTAGTCAAACT 656
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 690 AACAGGTGTTGAGTTTGCTTCTGAGCTTCATGATTTTGTTAACGAGGATCTAGTCAAACT 749
Query 657 CTATCCCAAAGCCAAGAACTTAGTGCAGATCACTCTGCTAGAGGCTGCAGACCACATCCT 716
||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 750 ATATCCTAAAGCCAAAAACTTAGTGCAGATCACTCTTCTAGAGGCTGCAGACCACATCTT 809
Query 717 GACCATGTTTGACAAGAGAATCACTGAGTTTGCTGAAGAAAAGTTTACTAGAGATGGTAT 776
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 810 GACCATGTTTGACAAGAGAATCACAGAGTTTGCTGAAGAAAAATTTACTAGAGATGGTAT 869
Query 777 TGATGTGAAATTGGGTTCTATGGTGGTCAAAGTGAATGATAAGGAAATTTCTGCTAAAAC 836
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 870 TGATGTGAAATTAGGTTCTATGGTGGTCAAAGTGAATGATAAGGAAATTTCTGCAAAAAC 929
Query 837 CAAAGGAGGAGAGGTCTCTACTATTCCTTATGGAATGATCGTTTGGTCAACTGGTATTGG 896
||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 930 CAAAGCAGGAGAGGTCTCAACTATTCCTTATGGAATGATTGTTTGGTCAACTGGTATTGG 989
Query 897 GACTCGTCCTGTGATCAAAGATTTTATGAAACAAATTGGTCAGGGAAATAGACGTGCTTT 956
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 990 GACTCGTCCTGTGATCAAAGATTTTATGAAACAAATTGGTCAGGGCAATAGACGTGCTTT 1049
Query 957 AGCTACCGATGAATGGCTTCGTGTTGAAGGATGTGATAACATATATGCACTTGGTGATTG 1016
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1050 AGCAACCGATGAATGGCTTCGTGTTGAAGGATGTGATAATATATATGCACTTGGTGATTG 1109
Query 1017 CGCAACAATCAACCAGAGAAAAGTCATGGAAGACATAGCTGCTATATTCAAGAAAGCAGA 1076
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 TGCAACAATCAACCAGAGAAAAGTCATGGAAGACATAGCTGCTATATTCAAGAAAGCAGA 1169
Query 1077 TAAGGAAAATTCAGGAACACTGACAATGAAAGAATTTCAAGAAGTAATGGGTGACATATG 1136
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1170 TAAGGAAAATTCAGGAACACTGACAATGAAAGAATTTCATGAAGTAATGAGTGACATATG 1229
Query 1137 TGATAGATACCCTCAAGTGCAACTCTACTTGAAGAGTAAAGGTATGCATGGCATTACCGA 1196
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1230 TGATAGATACCCTCAAGTGGAGCTCTACTTGAAGAGTAAAGGTATGCATGGCATTACCGA 1289
Query 1197 TCTTCTAAAAGAAGCACAAGCTGAGAATGGTTCCAATAAGTCCGTCGAACTCGATATAGA 1256
|||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1290 TCTTCTAAAACAAGCACAAGCTGAGAATGGTTCCAACAAGTCTGTCGAACTCGATATAGA 1349
Query 1257 AGAACTTAAATCAGCTCTTTGTCAAGTTGACTCACAAGTGAAGCTTCTTCCAGCTACAGG 1316
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1350 AGAACTTAAATCAGCTCTTTGTCAAGTTGACTCACAAGTGAAGCTTCTACCAGCGACAGG 1409
Query 1317 ACAGGTCGCTGCTCAGCAAGGTACTTACCTTGCAAAATGCTTTGATCGTATGGAAGTATG 1376
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1410 ACAGGTCGCTGCTCAACAAGGGACTTACCTTGCAAAATGCTTTGATCGTATGGAAGTATG 1469
Query 1377 CGAGAAGAATCCTGAAGGTCCCATTAGGATTAGAGGAGAAGGCCGTCATCGTTTCCGTCC 1436
|||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 1470 CGAGAAGAATCCTGAAGGTCCCATTAGGATTAGAGGAGAAGGTCGTCACCGCTTCCGTCC 1529
Query 1437 CTTCAGGTATCGACATTTGGGACAGTTTGCTCCATTAGGAGGGGAACAAACTGCGGCGCA 1496
|||||||||| ||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 1530 CTTCAGGTATAGACATTTGGGACAATTTGCTCCATTAGGAGGCGAACAAACCGCGGCGCA 1589
Query 1497 ACTTCCAGGAGACTGGGTTTCGATAGGACACAGTAGTCAATGGCTGTGGTACTCCGTTTA 1556
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1590 ACTTCCAGGAGACTGGGTTTCGATAGGACACAGCAGTCAATGGCTGTGGTACTCCGTTTA 1649
Query 1557 CGCTAGTAAGCAAGTGAGCTGGCGAACGAGAGTCCTGGTGGTCTCAGACTGGATGAGACG 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1650 CGCTAGTAAGCAAGTGAGCTGGCGAACGAGAGTCCTGGTGGTCTCAGACTGGATGAGACG 1709
Query 1617 ATTCATCTTCGGGAGGGATTCAAGTCGCATTTGA 1650
||||||||||||||||||||||||||||||||||
Sbjct 1710 ATTCATCTTCGGGAGGGATTCAAGTCGCATTTGA 1743
> AT4G05020.2 | Symbols: NDB2 | NAD(P)H dehydrogenase B2 | chr4:2572621-2576595
FORWARD LENGTH=2364
Length=2364
Score = 1441 bits (780), Expect = 0.0
Identities = 1250/1472 (85%), Gaps = 51/1472 (3%)
Strand=Plus/Plus
Query 1 GGTGGAGGACTTATAGTC-TACTCTGAGGCAAATGCATCATAT--AGC-AA---CAATG- 52
||||| |||||||||| | || ||||||||||| ||||| ||| ||| || ||
Sbjct 222 GGTGGTGGACTTATAG-CGTATTCTGAGGCAAACGCATCTTATGGAGCAAATGGTGGTGC 280
Query 53 -G-TGTTGAAACTGAAACC-AGAAAGAAAAAAGTAGTGTTGCTCGGAACTGGATGGGCTG 109
| ||||||||||| |||| || ||||| || || ||| |||||||||||||||||||||
Sbjct 281 TGTTGTTGAAACTGGAACCAAG-AAGAAGAAGGTGGTGCTGCTCGGAACTGGATGGGCTG 339
Query 110 GAGCAAGTTTCTTGAAGACTCTGAATAACTCTTC-TTATGAGGTTCAGGTTATATCGCCT 168
|| | ||||||||||||| | |||| || || || |||||||||||| |||||||||||
Sbjct 340 GAACTAGTTTCTTGAAGAATTTGAACAATTC-TCAATATGAGGTTCAGATTATATCGCCT 398
Query 169 CGAAACTACTTTGCTTTCACTCCCTTGTTACCTAGTGTTACTTGCGGAACTGTTGAAGCT 228
|| |||||||||||||||||||| || |||||||||||||||| |||||||||||||||
Sbjct 399 CGGAACTACTTTGCTTTCACTCCTTTACTACCTAGTGTTACTTGTGGAACTGTTGAAGCT 458
Query 229 CGCAGTGTTGTTGAACCTATCCGCAACATTGGAAGAAAGAATGTTGAGA-TGTCTTTCTT 287
|| ||||||||||| ||||| || ||||||||||||||||||||||| | | |||| |||
Sbjct 459 CGTAGTGTTGTTGAGCCTATTCGAAACATTGGAAGAAAGAATGTTGATACT-TCTTACTT 517
Query 288 GGAGGCAGAATGTGTT-AAAATTGATCCTCG-AAGCAAGAAAGTTTACTGTCGATCCAAA 345
||||||||||||| || ||||||||||| | |||||||| |||||||| |||||||||
Sbjct 518 GGAGGCAGAATGT-TTCAAAATTGATCC-AGCTAGCAAGAAGGTTTACTGCCGATCCAAA 575
Query 346 CAAGGCGTGAATTCGAACGGGAAGAGAGAATTTGATGTTGACTATGATTACCTTGTAATT 405
|||||| | | ||| || || |||| ||||||| |||||||||||| ||||||||||||
Sbjct 576 CAAGGCCTTAGTTCAAATGGAAAGAAAGAATTTTCTGTTGACTATGACTACCTTGTAATT 635
Query 406 GCTACTGGAGCTCAGTCAAACACATTTAATATTCCAGGGGTGGAGGAGAACTGTCATTTC 465
||||||||||||||||| ||||| ||||| || || || ||||||||||||||||||||
Sbjct 636 GCTACTGGAGCTCAGTCTAACACCTTTAACATACCCGGAGTGGAGGAGAACTGTCATTTT 695
Query 466 CTCAAAGAGGTTGAAGATGCACAGAGAATCCGTAGCACTGTCATTGATTCATTTGAGAAG 525
|| ||||||||||||||||| ||||||||||||| ||||| |||||||| |||||||||
Sbjct 696 CTGAAAGAGGTTGAAGATGCTCAGAGAATCCGTAAAACTGTAATTGATTCCTTTGAGAAG 755
Query 526 GCAAGTTTACCGGGACTAAACGAAGAAGAGAGAAAGAGAATGCTACATTTTGTAGTTGTT 585
|||||| |||| | ||||| ||| ||||||||||||||||| || |||||||| ||||||
Sbjct 756 GCAAGTCTACCAGAACTAAGCGATGAAGAGAGAAAGAGAATCCTGCATTTTGTGGTTGTT 815
Query 586 GGTGGTGGACCAACCGGTGTTGAGTTTGCTTCTGAGCTTCATGATTTTGTTAAC-GAGGA 644
|||||||| ||||| |||||||||||||| ||||||| |||||||||||| || |||||
Sbjct 816 GGTGGTGGGCCAACAGGTGTTGAGTTTGCCGCTGAGCTACATGATTTTGTT-ACTGAGGA 874
Query 645 TTTAGTCAAACTCTATCCCAAAGCCAAGAACTT-AGTGCAG-ATCACTCTGCTAGAGGCT 702
| |||||| |||||||| | ||||||| || ||||| | ||||| || || |||||
Sbjct 875 TCTAGTCAGTCTCTATCCTAGAGCCAAG-GGTTCAGTGC-GAATCACGCTTCTGGAGGCC 932
Query 703 GCAGACCACATCCTGACCATGTTTGACAAGAGAATCACTGAGTTTGCTGAAGAAAAGTTT 762
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 933 GCAGACCACATCCTGACCATGTTTGACAAGAGAATCACTGAGTTTGCCGAAGAAAAGTTT 992
Query 763 A-CTAGAGATGGTATTGATGTGAAA-TTGGGTTCTATGGTGG-TCAAAGTGAATGATAAG 819
| | |||||||| |||||||||||| |||| | | ||||| | ||||||||||| ||
Sbjct 993 AGC-AGAGATGGAATTGATGTGAAACTTGGCT-CGATGGTAACT-AAAGTGAATGAGAAA 1049
Query 820 GAAATTTCTGCTAAAACCAAAGGAGGAGAGGTCTC-TACTATTCCTTATGGAATGATCGT 878
|| || |||||||||||||||||||||||||| || | | ||||||||||||||||| ||
Sbjct 1050 GATATATCTGCTAAAACCAAAGGAGGAGAGGTTTCCT-CGATTCCTTATGGAATGATTGT 1108
Query 879 TTGGTCAACTGGTATTGGGACTCGTCCTGTGATCAAAGATTTTATGAAACAAATTGGTCA 938
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1109 CTGGTCAACTGGTATTGGAACTCGTCCTGTGATAAAAGATTTTATGAAACAAATTGGTCA 1168
Query 939 GGGAAATAGACGTGCTTTAGCTACCGATGAATGGCTTCGTGTTGAAGGATGTGATAACAT 998
||| |||||||| ||| | || || |||||||||||||| || |||||| |||||| ||
Sbjct 1169 GGGTAATAGACGAGCTCTGGCAACTGATGAATGGCTTCGCGTAGAAGGAACTGATAATAT 1228
Query 999 ATATGCACTTGGTGATTGCGCAACAATCAACCAGAGAAAAGTCATGGAAGACATAGCTGC 1058
|||||| ||||||||||||||||| || |||||| | |||||||||||||| | ||||
Sbjct 1229 ATATGCCCTTGGTGATTGCGCAACCATTAACCAGCGCAAAGTCATGGAAGATGTTTCTGC 1288
Query 1059 TATATTCAAG-AAAGCAGATAAGGAAAATTCAGGAACACTGACAATGAAAGAATTTCAAG 1117
||| || | | |||||||| || || || || || |||||||| | ||||| || ||||
Sbjct 1289 TATTTTTA-GCAAAGCAGACAAAGACAAGTCTGGGACACTGACTCTCAAAGAGTTCCAAG 1347
Query 1118 AAGTAATGGGTGACATATGTGATAGATACCCTCAAGTGCAACTCTACTTGAAGAGTAAAG 1177
||| ||||| |||||| |||| |||||||||||||||| | ||||||||||||||||||
Sbjct 1348 AAGCAATGGATGACATTTGTGTTAGATACCCTCAAGTGGAGCTCTACTTGAAGAGTAAAC 1407
Query 1178 GTATGCATGGCATTACCGATCTTCTAAAAGAAGCAC-AAGCTGA-GAATGGT-TCCAATA 1234
|||||| ||||||| | |||||||| |||||||| | || |||| || || | || || |
Sbjct 1408 GTATGCGTGGCATTGCAGATCTTCTTAAAGAAGC-CGAAACTGATGA-TG-TATCTAAGA 1464
Query 1235 AGTC-CGTCGAACTCGAT-ATAGAAGAACTT-AAATCAGCTCTTTGTCAAGTTGACTCAC 1291
| | | | ||||| || || ||||| || ||||| ||||| | ||| ||||||||||
Sbjct 1465 A-TAACATTGAACT-GAAGATCGAAGAG-TTCAAATCGGCTCTATCTCAGGTTGACTCAC 1521
Query 1292 AAGTGAAGCTTCTTCCAGCTACAGGACAGGTCGCTGCTCAGCAAGGTACTTACCTTGCAA 1351
|||||||| ||||||||||||| | |||||| ||||| ||||||||| ||||||| || |
Sbjct 1522 AAGTGAAGTTTCTTCCAGCTACTGCACAGGTTGCTGCGCAGCAAGGTGCTTACCTAGCTA 1581
Query 1352 AATGCTTTGATCGTATGGAAGTA-TGCGAGAAGAATCCTGAAGGTCCCATTAGGATTAGA 1410
|||||||||| |||||||||| | || ||||||| ||| ||||||||||||||||| |||
Sbjct 1582 AATGCTTTGACCGTATGGAAG-AGTGTGAGAAGAGTCCAGAAGGTCCCATTAGGATGAGA 1640
Query 1411 GGAGAAGGCCGTCATCGTTTCCGTCCCTTCAG 1442
|||||||| ||||| |||||||| ||||||||
Sbjct 1641 GGAGAAGGTCGTCACCGTTTCCGCCCCTTCAG 1672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81525685080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5