BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492734 Length=1650 Score E Sequences producing significant alignments: (Bits) Value AT4G21490.1 | Symbols: NDB3 | NAD(P)H dehydrogenase B3 | chr4:1... 2645 0.0 AT4G05020.2 | Symbols: NDB2 | NAD(P)H dehydrogenase B2 | chr4:2... 1441 0.0 > AT4G21490.1 | Symbols: NDB3 | NAD(P)H dehydrogenase B3 | chr4:11436495-11439326 REVERSE LENGTH=1743 Length=1743 Score = 2645 bits (1432), Expect = 0.0 Identities = 1581/1654 (96%), Gaps = 5/1654 (0%) Strand=Plus/Plus Query 1 GGTGGAGGACTTATAGTCTACTCTGAGGCAAATGCATCATATAGCAACAATGGTGTTGAA 60 ||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||| Sbjct 91 GGTGGGGGACTTATAGTTTACTCTGAGGCAAATCCATCATATAGCAACAATGGTGTTGAA 150 Query 61 ACTGAAACCAGAAAGAAAAAAGTAGTGTTGCTCGGAACTGGATGGGCTGGAGCAAGTTTC 120 ||| ||||||| |||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct 151 ACTAAAACCAGGAAGAGAAAAGTAGTGCTGCTCGGAACTGGATGGGCTGGAGCAAGTTTT 210 Query 121 TTGAAGACTCTGAATAACTCTTCTTATGAGGTTCAGGTTATATCGCCTCGAAACTACTTT 180 ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 211 TTGAAGACTTTGAATAACTCTTCTTATGAGGTTCAGGTTATATCTCCTCGAAACTACTTT 270 Query 181 GCTTTCACTCCCTTGTTACCTAGTGTTACTTGCGGAACTGTTGAAGCTCGCAGTGTTGTT 240 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 271 GCTTTCACTCCCTTGTTACCTAGTGTTACTTGTGGAACTGTTGAAGCTCGCAGCGTTGTT 330 Query 241 GAACCTATCCGCAACATTGGAAG-AA--AGAATGTTGAGATGTCTTTCTTGGAGGCAGAA 297 |||||||| |||||||||| ||| || |||||||||||||||||||||||||||||||| Sbjct 331 GAACCTATTCGCAACATTGCAAGAAAGCAGAATGTTGAGATGTCTTTCTTGGAGGCAGAA 390 Query 298 TGTGTT-AAAATTGATCCTCGAAGCAAGAAAGTTTACTGTCGATCCAAACAAGGCGTGAA 356 ||| || ||||||||||| ||||||||||||||||||| ||||| |||||||||||||| Sbjct 391 TGT-TTCAAAATTGATCCAGGAAGCAAGAAAGTTTACTGCCGATCAAAACAAGGCGTGAA 449 Query 357 TTCGAACGGGAAGAGAGAATTTGATGTTGACTATGATTACCTTGTAATTGCTACTGGAGC 416 |||||| ||||||| ||| ||||||||||||||||| ||||||||||| ||||||||||| Sbjct 450 TTCGAAAGGGAAGAAAGAGTTTGATGTTGACTATGACTACCTTGTAATCGCTACTGGAGC 509 Query 417 TCAGTCAAACACATTTAATATTCCAGGGGTGGAGGAGAACTGTCATTTCCTCAAAGAGGT 476 |||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||| Sbjct 510 TCAGTCTAACACATTTAACATTCCTGGCGTGGAGGAGAACTGTCATTTCCTCAAAGAGGT 569 Query 477 TGAAGATGCACAGAGAATCCGTAGCACTGTCATTGATTCATTTGAGAAGGCAAGTTTACC 536 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 570 TGAAGATGCACAGAGAATTCGTAGTACTGTCATTGATTCATTTGAGAAGGCAAGTTTACC 629 Query 537 GGGACTAAACGAAGAAGAGAGAAAGAGAATGCTACATTTTGTAGTTGTTGGTGGTGGACC 596 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 630 TGGACTAAACGAACAAGAGAGAAAGAGAATGCTACATTTTGTAGTTGTTGGTGGTGGACC 689 Query 597 AACCGGTGTTGAGTTTGCTTCTGAGCTTCATGATTTTGTTAACGAGGATTTAGTCAAACT 656 ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 690 AACAGGTGTTGAGTTTGCTTCTGAGCTTCATGATTTTGTTAACGAGGATCTAGTCAAACT 749 Query 657 CTATCCCAAAGCCAAGAACTTAGTGCAGATCACTCTGCTAGAGGCTGCAGACCACATCCT 716 ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| | Sbjct 750 ATATCCTAAAGCCAAAAACTTAGTGCAGATCACTCTTCTAGAGGCTGCAGACCACATCTT 809 Query 717 GACCATGTTTGACAAGAGAATCACTGAGTTTGCTGAAGAAAAGTTTACTAGAGATGGTAT 776 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 810 GACCATGTTTGACAAGAGAATCACAGAGTTTGCTGAAGAAAAATTTACTAGAGATGGTAT 869 Query 777 TGATGTGAAATTGGGTTCTATGGTGGTCAAAGTGAATGATAAGGAAATTTCTGCTAAAAC 836 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 870 TGATGTGAAATTAGGTTCTATGGTGGTCAAAGTGAATGATAAGGAAATTTCTGCAAAAAC 929 Query 837 CAAAGGAGGAGAGGTCTCTACTATTCCTTATGGAATGATCGTTTGGTCAACTGGTATTGG 896 ||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 930 CAAAGCAGGAGAGGTCTCAACTATTCCTTATGGAATGATTGTTTGGTCAACTGGTATTGG 989 Query 897 GACTCGTCCTGTGATCAAAGATTTTATGAAACAAATTGGTCAGGGAAATAGACGTGCTTT 956 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 990 GACTCGTCCTGTGATCAAAGATTTTATGAAACAAATTGGTCAGGGCAATAGACGTGCTTT 1049 Query 957 AGCTACCGATGAATGGCTTCGTGTTGAAGGATGTGATAACATATATGCACTTGGTGATTG 1016 ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1050 AGCAACCGATGAATGGCTTCGTGTTGAAGGATGTGATAATATATATGCACTTGGTGATTG 1109 Query 1017 CGCAACAATCAACCAGAGAAAAGTCATGGAAGACATAGCTGCTATATTCAAGAAAGCAGA 1076 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1110 TGCAACAATCAACCAGAGAAAAGTCATGGAAGACATAGCTGCTATATTCAAGAAAGCAGA 1169 Query 1077 TAAGGAAAATTCAGGAACACTGACAATGAAAGAATTTCAAGAAGTAATGGGTGACATATG 1136 ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 1170 TAAGGAAAATTCAGGAACACTGACAATGAAAGAATTTCATGAAGTAATGAGTGACATATG 1229 Query 1137 TGATAGATACCCTCAAGTGCAACTCTACTTGAAGAGTAAAGGTATGCATGGCATTACCGA 1196 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 1230 TGATAGATACCCTCAAGTGGAGCTCTACTTGAAGAGTAAAGGTATGCATGGCATTACCGA 1289 Query 1197 TCTTCTAAAAGAAGCACAAGCTGAGAATGGTTCCAATAAGTCCGTCGAACTCGATATAGA 1256 |||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 1290 TCTTCTAAAACAAGCACAAGCTGAGAATGGTTCCAACAAGTCTGTCGAACTCGATATAGA 1349 Query 1257 AGAACTTAAATCAGCTCTTTGTCAAGTTGACTCACAAGTGAAGCTTCTTCCAGCTACAGG 1316 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 1350 AGAACTTAAATCAGCTCTTTGTCAAGTTGACTCACAAGTGAAGCTTCTACCAGCGACAGG 1409 Query 1317 ACAGGTCGCTGCTCAGCAAGGTACTTACCTTGCAAAATGCTTTGATCGTATGGAAGTATG 1376 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1410 ACAGGTCGCTGCTCAACAAGGGACTTACCTTGCAAAATGCTTTGATCGTATGGAAGTATG 1469 Query 1377 CGAGAAGAATCCTGAAGGTCCCATTAGGATTAGAGGAGAAGGCCGTCATCGTTTCCGTCC 1436 |||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 1470 CGAGAAGAATCCTGAAGGTCCCATTAGGATTAGAGGAGAAGGTCGTCACCGCTTCCGTCC 1529 Query 1437 CTTCAGGTATCGACATTTGGGACAGTTTGCTCCATTAGGAGGGGAACAAACTGCGGCGCA 1496 |||||||||| ||||||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct 1530 CTTCAGGTATAGACATTTGGGACAATTTGCTCCATTAGGAGGCGAACAAACCGCGGCGCA 1589 Query 1497 ACTTCCAGGAGACTGGGTTTCGATAGGACACAGTAGTCAATGGCTGTGGTACTCCGTTTA 1556 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1590 ACTTCCAGGAGACTGGGTTTCGATAGGACACAGCAGTCAATGGCTGTGGTACTCCGTTTA 1649 Query 1557 CGCTAGTAAGCAAGTGAGCTGGCGAACGAGAGTCCTGGTGGTCTCAGACTGGATGAGACG 1616 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1650 CGCTAGTAAGCAAGTGAGCTGGCGAACGAGAGTCCTGGTGGTCTCAGACTGGATGAGACG 1709 Query 1617 ATTCATCTTCGGGAGGGATTCAAGTCGCATTTGA 1650 |||||||||||||||||||||||||||||||||| Sbjct 1710 ATTCATCTTCGGGAGGGATTCAAGTCGCATTTGA 1743 > AT4G05020.2 | Symbols: NDB2 | NAD(P)H dehydrogenase B2 | chr4:2572621-2576595 FORWARD LENGTH=2364 Length=2364 Score = 1441 bits (780), Expect = 0.0 Identities = 1250/1472 (85%), Gaps = 51/1472 (3%) Strand=Plus/Plus Query 1 GGTGGAGGACTTATAGTC-TACTCTGAGGCAAATGCATCATAT--AGC-AA---CAATG- 52 ||||| |||||||||| | || ||||||||||| ||||| ||| ||| || || Sbjct 222 GGTGGTGGACTTATAG-CGTATTCTGAGGCAAACGCATCTTATGGAGCAAATGGTGGTGC 280 Query 53 -G-TGTTGAAACTGAAACC-AGAAAGAAAAAAGTAGTGTTGCTCGGAACTGGATGGGCTG 109 | ||||||||||| |||| || ||||| || || ||| ||||||||||||||||||||| Sbjct 281 TGTTGTTGAAACTGGAACCAAG-AAGAAGAAGGTGGTGCTGCTCGGAACTGGATGGGCTG 339 Query 110 GAGCAAGTTTCTTGAAGACTCTGAATAACTCTTC-TTATGAGGTTCAGGTTATATCGCCT 168 || | ||||||||||||| | |||| || || || |||||||||||| ||||||||||| Sbjct 340 GAACTAGTTTCTTGAAGAATTTGAACAATTC-TCAATATGAGGTTCAGATTATATCGCCT 398 Query 169 CGAAACTACTTTGCTTTCACTCCCTTGTTACCTAGTGTTACTTGCGGAACTGTTGAAGCT 228 || |||||||||||||||||||| || |||||||||||||||| ||||||||||||||| Sbjct 399 CGGAACTACTTTGCTTTCACTCCTTTACTACCTAGTGTTACTTGTGGAACTGTTGAAGCT 458 Query 229 CGCAGTGTTGTTGAACCTATCCGCAACATTGGAAGAAAGAATGTTGAGA-TGTCTTTCTT 287 || ||||||||||| ||||| || ||||||||||||||||||||||| | | |||| ||| Sbjct 459 CGTAGTGTTGTTGAGCCTATTCGAAACATTGGAAGAAAGAATGTTGATACT-TCTTACTT 517 Query 288 GGAGGCAGAATGTGTT-AAAATTGATCCTCG-AAGCAAGAAAGTTTACTGTCGATCCAAA 345 ||||||||||||| || ||||||||||| | |||||||| |||||||| ||||||||| Sbjct 518 GGAGGCAGAATGT-TTCAAAATTGATCC-AGCTAGCAAGAAGGTTTACTGCCGATCCAAA 575 Query 346 CAAGGCGTGAATTCGAACGGGAAGAGAGAATTTGATGTTGACTATGATTACCTTGTAATT 405 |||||| | | ||| || || |||| ||||||| |||||||||||| |||||||||||| Sbjct 576 CAAGGCCTTAGTTCAAATGGAAAGAAAGAATTTTCTGTTGACTATGACTACCTTGTAATT 635 Query 406 GCTACTGGAGCTCAGTCAAACACATTTAATATTCCAGGGGTGGAGGAGAACTGTCATTTC 465 ||||||||||||||||| ||||| ||||| || || || |||||||||||||||||||| Sbjct 636 GCTACTGGAGCTCAGTCTAACACCTTTAACATACCCGGAGTGGAGGAGAACTGTCATTTT 695 Query 466 CTCAAAGAGGTTGAAGATGCACAGAGAATCCGTAGCACTGTCATTGATTCATTTGAGAAG 525 || ||||||||||||||||| ||||||||||||| ||||| |||||||| ||||||||| Sbjct 696 CTGAAAGAGGTTGAAGATGCTCAGAGAATCCGTAAAACTGTAATTGATTCCTTTGAGAAG 755 Query 526 GCAAGTTTACCGGGACTAAACGAAGAAGAGAGAAAGAGAATGCTACATTTTGTAGTTGTT 585 |||||| |||| | ||||| ||| ||||||||||||||||| || |||||||| |||||| Sbjct 756 GCAAGTCTACCAGAACTAAGCGATGAAGAGAGAAAGAGAATCCTGCATTTTGTGGTTGTT 815 Query 586 GGTGGTGGACCAACCGGTGTTGAGTTTGCTTCTGAGCTTCATGATTTTGTTAAC-GAGGA 644 |||||||| ||||| |||||||||||||| ||||||| |||||||||||| || ||||| Sbjct 816 GGTGGTGGGCCAACAGGTGTTGAGTTTGCCGCTGAGCTACATGATTTTGTT-ACTGAGGA 874 Query 645 TTTAGTCAAACTCTATCCCAAAGCCAAGAACTT-AGTGCAG-ATCACTCTGCTAGAGGCT 702 | |||||| |||||||| | ||||||| || ||||| | ||||| || || ||||| Sbjct 875 TCTAGTCAGTCTCTATCCTAGAGCCAAG-GGTTCAGTGC-GAATCACGCTTCTGGAGGCC 932 Query 703 GCAGACCACATCCTGACCATGTTTGACAAGAGAATCACTGAGTTTGCTGAAGAAAAGTTT 762 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 933 GCAGACCACATCCTGACCATGTTTGACAAGAGAATCACTGAGTTTGCCGAAGAAAAGTTT 992 Query 763 A-CTAGAGATGGTATTGATGTGAAA-TTGGGTTCTATGGTGG-TCAAAGTGAATGATAAG 819 | | |||||||| |||||||||||| |||| | | ||||| | ||||||||||| || Sbjct 993 AGC-AGAGATGGAATTGATGTGAAACTTGGCT-CGATGGTAACT-AAAGTGAATGAGAAA 1049 Query 820 GAAATTTCTGCTAAAACCAAAGGAGGAGAGGTCTC-TACTATTCCTTATGGAATGATCGT 878 || || |||||||||||||||||||||||||| || | | ||||||||||||||||| || Sbjct 1050 GATATATCTGCTAAAACCAAAGGAGGAGAGGTTTCCT-CGATTCCTTATGGAATGATTGT 1108 Query 879 TTGGTCAACTGGTATTGGGACTCGTCCTGTGATCAAAGATTTTATGAAACAAATTGGTCA 938 ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1109 CTGGTCAACTGGTATTGGAACTCGTCCTGTGATAAAAGATTTTATGAAACAAATTGGTCA 1168 Query 939 GGGAAATAGACGTGCTTTAGCTACCGATGAATGGCTTCGTGTTGAAGGATGTGATAACAT 998 ||| |||||||| ||| | || || |||||||||||||| || |||||| |||||| || Sbjct 1169 GGGTAATAGACGAGCTCTGGCAACTGATGAATGGCTTCGCGTAGAAGGAACTGATAATAT 1228 Query 999 ATATGCACTTGGTGATTGCGCAACAATCAACCAGAGAAAAGTCATGGAAGACATAGCTGC 1058 |||||| ||||||||||||||||| || |||||| | |||||||||||||| | |||| Sbjct 1229 ATATGCCCTTGGTGATTGCGCAACCATTAACCAGCGCAAAGTCATGGAAGATGTTTCTGC 1288 Query 1059 TATATTCAAG-AAAGCAGATAAGGAAAATTCAGGAACACTGACAATGAAAGAATTTCAAG 1117 ||| || | | |||||||| || || || || || |||||||| | ||||| || |||| Sbjct 1289 TATTTTTA-GCAAAGCAGACAAAGACAAGTCTGGGACACTGACTCTCAAAGAGTTCCAAG 1347 Query 1118 AAGTAATGGGTGACATATGTGATAGATACCCTCAAGTGCAACTCTACTTGAAGAGTAAAG 1177 ||| ||||| |||||| |||| |||||||||||||||| | |||||||||||||||||| Sbjct 1348 AAGCAATGGATGACATTTGTGTTAGATACCCTCAAGTGGAGCTCTACTTGAAGAGTAAAC 1407 Query 1178 GTATGCATGGCATTACCGATCTTCTAAAAGAAGCAC-AAGCTGA-GAATGGT-TCCAATA 1234 |||||| ||||||| | |||||||| |||||||| | || |||| || || | || || | Sbjct 1408 GTATGCGTGGCATTGCAGATCTTCTTAAAGAAGC-CGAAACTGATGA-TG-TATCTAAGA 1464 Query 1235 AGTC-CGTCGAACTCGAT-ATAGAAGAACTT-AAATCAGCTCTTTGTCAAGTTGACTCAC 1291 | | | | ||||| || || ||||| || ||||| ||||| | ||| |||||||||| Sbjct 1465 A-TAACATTGAACT-GAAGATCGAAGAG-TTCAAATCGGCTCTATCTCAGGTTGACTCAC 1521 Query 1292 AAGTGAAGCTTCTTCCAGCTACAGGACAGGTCGCTGCTCAGCAAGGTACTTACCTTGCAA 1351 |||||||| ||||||||||||| | |||||| ||||| ||||||||| ||||||| || | Sbjct 1522 AAGTGAAGTTTCTTCCAGCTACTGCACAGGTTGCTGCGCAGCAAGGTGCTTACCTAGCTA 1581 Query 1352 AATGCTTTGATCGTATGGAAGTA-TGCGAGAAGAATCCTGAAGGTCCCATTAGGATTAGA 1410 |||||||||| |||||||||| | || ||||||| ||| ||||||||||||||||| ||| Sbjct 1582 AATGCTTTGACCGTATGGAAG-AGTGTGAGAAGAGTCCAGAAGGTCCCATTAGGATGAGA 1640 Query 1411 GGAGAAGGCCGTCATCGTTTCCGTCCCTTCAG 1442 |||||||| ||||| |||||||| |||||||| Sbjct 1641 GGAGAAGGTCGTCACCGTTTCCGCCCCTTCAG 1672 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81525685080 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5