BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492739
Length=630
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21445.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 850 0.0
> AT4G21445.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast, chloroplast stroma; Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
| chr4:11424710-11425767 FORWARD LENGTH=713
Length=713
Score = 850 bits (460), Expect = 0.0
Identities = 589/647 (91%), Gaps = 25/647 (4%)
Strand=Plus/Plus
Query 1 TCTAACTCACCGAGAAAGAAAAGCAAAGAGAGTTTGGTATAACTATGAACATTCCCA--C 58
||||||||||||||||||||||| |||||||||||||| | |||||||||||| ||| |
Sbjct 28 TCTAACTCACCGAGAAAGAAAAGTAAAGAGAGTTTGGTGTCACTATGAACATTGCCATTC 87
Query 59 -TTATTACCGCCACTCAAACTTCATCTTAAATCCTCATATAGACAAGACTTTTGCGAGGA 117
| ||||||| |||||||| |||||| |||||||||| ||||||||||||||||| ||||
Sbjct 88 ATAATTACCGTCACTCAAAATTCATCGTAAATCCTCACATAGACAAGACTTTTGCAAGGA 147
Query 118 CTCGACAATCAAGATCAAATAATATCACATTCATGACAAGAACTCAAGGAAGAAGAAGAA 177
||||||| |||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 148 CTCGACAGGCAAGATCAAATAATATTACATTCATGACAAGTACTCATGGAAGAAGAAGAA 207
Query 178 TGATGGGACTGTGTTTGGTAAGAGCAAGTGCCGACACCGGAGAAGAAGAAT-CTAGCGAT 236
||||||||| ||||||||||||||||||||||| |||||||||||||||| | | ||||
Sbjct 208 CGATGGGACTTTGTTTGGTAAGAGCAAGTGCCGAGACCGGAGAAGAAGAATCCGA-CGAT 266
Query 237 CAAAGCAAGCCTGAGAGAAGAAGTTTCTTGAGCTTAGCAGAAGCCGGTCTTGTCGAGATC 296
|||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 267 CAAAACAAGCCTGAGAGAAGAAGTTTCTTGAGCTTAGCAGAAGCTGGTCTAGTCGAAATC 326
Query 297 TCGGGCCTTGGTGCACACGAGAAGTTTCTCTGTCGACTAACGATATCGTCGTTGAATTTG 356
|| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 327 TCAGGCCTTGGTGCACACGAGAAGTTTCTCTGTCGACTAACGATATCATCATTGAATTTG 386
Query 357 CTAAGAGTGATATCAGAGCAAGAAGGATGTTCAATAGAAGAGTTGAATGCTGGCAAAATA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 CTAAGAGTGATATCAGAGCAAGAAGGATGTTCAATAGAAGAGTTGAATGCTGGCAAAATA 446
Query 417 TGTGACTGGTTCCTTAAGGACAAGCTGAAGAGAGAGCATAACATTGAATCTGCTGTTCTT 476
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 TGTGATTGGTTCCTTAAGGACAAGCTGAAGAGAGAGCATAACATTGAATCTGCTGTTCTT 506
Query 477 CAATGGGATGATCCCGATTTTCCTTTTTAAATATTCGTATTTTACCTTTA-ATT-AAGCC 534
|||||||||||||||||||||||||||||||||| | |||||| || | ||| |||||
Sbjct 507 CAATGGGATGATCCCGATTTTCCTTTTTAAATATCCTTATTTT---TT-ACATTCAAGCC 562
Query 535 ACACTA--GCT-TCG-TCATTAACAAGGTGAATATATAT-GT--GTCTTAAT----CTAT 583
|||| | | | | | ||||||||||||||||||| ||| || |||||||| ||||
Sbjct 563 ACACAAAAG-TAT-GATCATTAACAAGGTGAATATGTATCGTAAGTCTTAATTAGTCTAT 620
Query 584 TGTGGTCTGACTAGGAAA-TATAAACCCTTTGTTAAGTCCTACTATA 629
|||||||||||||||||| |||||||| ||||||||||||||| |||
Sbjct 621 TGTGGTCTGACTAGGAAAATATAAACCTTTTGTTAAGTCCTACAATA 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30391658935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5