BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492740
Length=1186
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21440.1 | Symbols: ATMYB102, ATM4, MYB102 | MYB-like 102 | ... 1731 0.0
AT2G16720.1 | Symbols: MYB7, ATMYB7, ATY49 | myb domain protein... 130 3e-29
AT1G22640.1 | Symbols: ATMYB3, MYB3 | myb domain protein 3 | ch... 122 5e-27
> AT4G21440.1 | Symbols: ATMYB102, ATM4, MYB102 | MYB-like 102
| chr4:11418246-11419760 REVERSE LENGTH=1340
Length=1340
Score = 1731 bits (937), Expect = 0.0
Identities = 1118/1203 (93%), Gaps = 21/1203 (2%)
Strand=Plus/Plus
Query 1 ACGACCTTTTGTTTCTCTCTTCTCTATTCATA-T-TA-TTTTCCTCAAACTCTCTGATTA 57
|||||||||||||||||||||||||||| ||| | || ||||||||||||||||||||||
Sbjct 1 ACGACCTTTTGTTTCTCTCTTCTCTATTAATACTATAGTTTTCCTCAAACTCTCTGATTA 60
Query 58 GCTCATAATTACTAAACC-----A--A---TTTTCTGATAAACAATCAATGGGAAGGTCA 107
|||||||| ||||||||| | | |||||||||||||||||||||| |||||||
Sbjct 61 GCTCATAAATACTAAACCAGTTGACCATTTTTTTCTGATAAACAATCAATGGCAAGGTCA 120
Query 108 CCTTGTTGCGAGAAGAACGGGCTCAAGAAAGGGCCATGGACATCTGAAGAAGACCAGAAG 167
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 121 CCTTGTTGCGAGAAGAACGGACTCAAGAAAGGGCCTTGGACATCTGAAGAAGACCAGAAG 180
Query 168 CTTGTTGACTATATCCACAAACATGGTTATGGTAACTGGAGAACCCTCCCCAAAAATGCT 227
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTGTTGACTATATCCAGAAACATGGTTATGGTAACTGGAGAACCCTCCCCAAAAATGCC 240
Query 228 GGTTTGCAAAGATGTGGCAAAAGTTGTAGGTTAAGGTGGACTAATTATCTCCGACCAGAT 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTTTGCAAAGATGTGGCAAAAGTTGTAGGTTAAGGTGGACTAATTATCTCCGACCAGAT 300
Query 288 ATAAAGCGAGGAAGGTTCTCTTTCGAGGAAGAAGAAACCATTATTCAGCTTCATAGCTTC 347
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 ATAAAGCGAGGAAGGTTCTCTTTTGAGGAAGAAGAAACCATTATTCAGCTTCATAGCTTC 360
Query 348 TTAGGAAACAAGTGGTCGGCGATTGCGGCCCGTTTGCCTGGAAGAACAGATAACGAGATC 407
||||||||||||||||| ||||||||||| ||||| || |||||||||||||| ||||||
Sbjct 361 TTAGGAAACAAGTGGTCTGCGATTGCGGCGCGTTTACCAGGAAGAACAGATAATGAGATC 420
Query 408 AAGAACTTCTGGAACACTCATATAAGAAAGAAGTTACTTAGAATGGGGATTGATCCAGTG 467
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 AAGAACTTTTGGAACACTCATATAAGAAAGAAGCTACTTAGAATGGGGATTGATCCAGTG 480
Query 468 ACTCACAGTCCGCGTCTCGATCTCCTCGATATCTCATCCATCTTAGCTTCGTCTCTATAC 527
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 ACTCACAGTCCACGACTCGATCTCCTCGATATCTCATCCATCTTAGCTTCATCTCTATAC 540
Query 528 AATTCATCTTCACATCATTTGAACATGCCAGGAGGACTCATGATGGATACTCATCGTCGT 587
||||||||||||||||| |||||||| || || |||||||||||||||| ||||||||
Sbjct 541 AATTCATCTTCACATCACATGAACATGTCA--AG-ACTCATGATGGATACTAATCGTCGT 597
Query 588 CATCAGCAGCAACATCCATTGTTTAACCCCGAGATACTCAAGCTCGCAACCTCTCTCTTC 647
||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 598 CATCACCAGCAACATCCATTGGTTAACCCCGAGATACTCAAGCTCGCTACCTCTCTCTTC 657
Query 648 TCTCAAAACCAAAACCAAAACCTTGTGGTGGATCATGACTCAAGAACTCAACAGAAGCAA 707
|||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 658 TCTCAAAATCAAAACCAAAACCTTGTGGTGGATCATGACTCGAGAACTCAAGAGAAGCAA 717
Query 708 ACAGTGCATAACCAAACCGGAGTAAACCACTACCAAACCGACCAATATTTCGAGAACACG 767
||||| ||| |||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 718 ACAGTTTATAGCCAAACCGGAGTAAACCAATACCAAACCAACCAATATTTCGAGAACACG 777
Query 768 GTTACTCAAGAACTCCAATCTTCCATGCCGCCATTTCCCAATGAAGCTCAT--GTT-AAC 824
|||||||||||||||||||||||||||| ||||| ||||||||||||| | ||| |||
Sbjct 778 ATTACTCAAGAACTCCAATCTTCCATGCCACCATTCCCCAATGAAGCTCGTCAGTTTAAC 837
Query 825 GACATGGACCATCACTTCAATGGTTTTGGAGGACAAACTCTAGCTTCAACTTCGACAACG 884
||||||| |||||||||||||||||||||| ||||| ||| | ||||||||| || |||
Sbjct 838 AACATGGATCATCACTTCAATGGTTTTGGAGAACAAAATCTTGTTTCAACTTCTACTACG 897
Query 885 TCTCTCCAAGATTGCAATAATCTATCGTTCAATGATTATTCAAGTTCTAATTTTGTATTA 944
|| ||||||||||| |||||| || ||||| |||||||||||||| |||||||| ||
Sbjct 898 TCAGTCCAAGATTGCTATAATCCGTCATTCAACGATTATTCAAGTTCAAATTTTGTCTTG 957
Query 945 GATCCTTCTTATTCGGATCAGAGCTTCAACTTCGCTAATTCGGTCTTGAACACGCCATCT 1004
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 958 GATCCTTCTTATTCGGATCAGAGCTTCAACTTCGCAAATTCGGTCTTAAACACGCCATCC 1017
Query 1005 TCAAGCCCGAGCCCGACTACGTTAAACTCGAGTTACATCAATAGTAGCAGTTGCAGCACT 1064
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TCGAGCCCGAGCCCGACTACGTTAAACTCGAGTTACATCAATAGTAGCAGTTGCAGCACT 1077
Query 1065 GAGGATGAAATGGAAAGCTATTGCAGTAATCTCATGAAGTTTGATATTCCTGATTTCTTG 1124
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1078 GAGGATGAAATAGAAAGCTATTGCAGTAATCTCATGAAGTTTGATATTCCCGATTTCTTG 1137
Query 1125 GACGTTAATGGTTTTATTATATAATTCCAAGAAAGAACATAAAAC-CTGAGTGGGATAGA 1183
|||||||||||||||||||||||||||||||||| || ||||||| | |||||||||| |
Sbjct 1138 GACGTTAATGGTTTTATTATATAATTCCAAGAAACAAAATAAAACTC-GAGTGGGATACA 1196
Query 1184 GTT 1186
|||
Sbjct 1197 GTT 1199
> AT2G16720.1 | Symbols: MYB7, ATMYB7, ATY49 | myb domain protein
7 | chr2:7255529-7256580 REVERSE LENGTH=980
Length=980
Score = 130 bits (70), Expect = 3e-29
Identities = 174/221 (79%), Gaps = 20/221 (9%)
Strand=Plus/Plus
Query 262 GGTGGACTAATTATCTCCGACCAGATAT-AAAGCGAGG-AAGGTT-CTCTTTCGAGGAAG 318
|||||| ||| ||||||||||| ||| | ||| |||| || || | | | || ||||
Sbjct 197 GGTGGATTAACTATCTCCGACCTGATCTCAAA-AGAGGAAACTTTACAC-AT-GATGAAG 253
Query 319 AAGAAACCATTAT--TC-AGCTTCATAGCTTCTTAGGAAACAAGTGGTCGGCGATTGCGG 375
| | || | |||| || ||||||||||| || |||| ||||||||||| ||||||||
Sbjct 254 ATG-AA-C-TTATCATCAAGCTTCATAGCCTCCTAGGCAACAAGTGGTCTTTGATTGCGG 310
Query 376 CCCGTTTGCCTGGAAGAACAGATAACGAGATCAAGAACTTCTGGAACACTCATATAAGAA 435
| | || ||||||||||||||||||||||||||||||| ||||||||| ||||||| |
Sbjct 311 CGAGATTACCTGGAAGAACAGATAACGAGATCAAGAACTACTGGAACACACATATAA-AG 369
Query 436 AG-AAG-TTACTT-AG-AATGGGGATTGATCCAGTGACTCA 472
|| ||| || || || || ||| |||||||||| |||||
Sbjct 370 AGGAAGCTT--TTGAGCAAAGGG-ATTGATCCAGCCACTCA 407
> AT1G22640.1 | Symbols: ATMYB3, MYB3 | myb domain protein 3 |
chr1:8006195-8007428 FORWARD LENGTH=1077
Length=1077
Score = 122 bits (66), Expect = 5e-27
Identities = 283/384 (74%), Gaps = 30/384 (8%)
Strand=Plus/Plus
Query 96 ATGGGAAGGTCACCTTGTTGCGAGAAGAACGGGC-TCAAGAAAGG-GCCATGGACAT-CT 152
|||||||| ||||| || |||||||| | | | | || ||||| | | ||||| |
Sbjct 95 ATGGGAAGATCACCATGCTGCGAGAA-AGCTCACATGAACAAAGGAG-CTTGGAC-TAAA 151
Query 153 GAAGAAGACCAGAAGCTTGTTGACTATATCCACAAACATGGTTATGGTAACTGGAGAACC 212
|||||||| ||| |||||||| || |||| ||||| ||| | ||| |||| || |
Sbjct 152 GAAGAAGATCAGCTTCTTGTTGATTACATCCGTAAACACGGTGAAGGTTGCTGGCGATCT 211
Query 213 CTCCC-CAAAAATGCTGGTTTGCAAAGATGTGGCAAAAGTTGTAGGTTAAGGTGGACT-A 270
||||| | ||||| || ||||||||||| || |||||||| || || |||| | |
Sbjct 212 CTCCCTC-GCGCCGCTGGATTACAAAGATGTGGTAAGAGTTGTAGATTGAGATGGA-TGA 269
Query 271 ATTATCTCCGACCAGATAT-AAAGCGAGG-AAGGTTCTCTTTCGAGGAAGAAGAAAC-CA 327
||||||| |||||||| | ||| |||| || || || || ||||| ||| | ||
Sbjct 270 ATTATCTAAGACCAGATCTCAAAA-GAGGCAATTTTA-CTGAAGAAGAAGATGAA-CTCA 326
Query 328 TTATTCA-GCTTCATAGCTT-CTTAGGAAACAAGTGGTCGGCGATTGC-GGCCCGTTTGC 384
| || || ||| |||||||| || || ||||| ||||| || || || | || |
Sbjct 327 TCAT-CAAGCTCCATAGCTTGCTC-GGTAACAAATGGTCTTTAATAGCTGGGA-GATTAC 383
Query 385 CTGGAAGAACAGATAACGAGATCAAGAACT-TCTGGAACACTCATAT-AAGAAAGAAG-T 441
| |||||||||||||||||||||||||||| | |||||||||||||| |||| |||| |
Sbjct 384 CAGGAAGAACAGATAACGAGATCAAGAACTAT-TGGAACACTCATATCAAGAG-GAAGCT 441
Query 442 TACTTAGAA-TGGGGATTGATCCA 464
| || || |||| |||||||||
Sbjct 442 T-CTCAGCCGTGGG-ATTGATCCA 463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58232632200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5