BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492741
Length=802
Score E
Sequences producing significant alignments: (Bits) Value
AT5G34837.1 | Symbols: | transposable element gene | chr5:1300... 1219 0.0
AT5G28710.1 | Symbols: | transposable element gene | chr5:1075... 1000 0.0
> AT5G34837.1 | Symbols: | transposable element gene | chr5:13005694-13006653
FORWARD LENGTH=960
Length=960
Score = 1219 bits (660), Expect = 0.0
Identities = 770/820 (94%), Gaps = 19/820 (2%)
Strand=Plus/Plus
Query 1 GATTCAATGAATCCATATCATCATACTTCAAGCTTTATAAACCTGTTGAACAGTCAAGAT 60
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3 GATTCACCGAATCCATATCATCATACTTCAAGCTTTATAAACCTTTTGAACAGTCAAGAT 62
Query 61 GACAGTCACATTCTCCCACCAAATCCATATGAATGCTTGGAACTTGGATCAACAAATGTC 120
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 63 GACAGTCACATTCTCCCACCAAATCCATATGAATGCTTTGAACTTGGATCAGCAAATGTC 122
Query 121 CATGTGTTTAGCACTGAGTGGTCTGATGATGATCCAAGTGAAGATGAAGCACCAATTGCT 180
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 CCTGTGTATAGCACTGAGTGGTCTGATGATGATCCAAGTGAAGATGAAGCACCAATTGCT 182
Query 181 -----------------GGGAAGAAAGGGAAGAAAGCCAAGAAACCAAGGAGGAATTGGT 223
||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 183 GGGAAAAAGGGAAGAAAGGGAAGAAAGGGAAGAAAGTCAAGAAACCAAAGAGGAATTGGT 242
Query 224 CATCAACTGAAGATGTTGTTCTCATAAGTGGGTGGCTGAACACTTCCAAGGATCCGGTGG 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 CATCAACTGAAGATGTTGTTCTCATAAGTGGGTGGCTGAACACTTCCAAGGATCCGGTGG 302
Query 284 TGGGCAATGAGCAAAAGGGGGCAGCGTTCTGGGAACGTATAGCAGCCTACTACAACTCAA 343
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 303 TGGGCAATGAGCAAAAGGGGGCAGCTTTCTGGGAACGTATAGCAGCGTACTACAACTCAA 362
Query 344 GTCCCAAGCTCAAAGGTGTGGAAAAGAGAGGCCACATATGTTGTAAACAGAGGTGGTCAT 403
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 363 GTCCCAAGCTCAAAGGTGTGGAAAAGAGAGGCCACATATGTTGTAAACAAAGGTGGTCAA 422
Query 404 AAGTGAATGACGCCGTGAACAAGTTTGTAGGGAGCTACTTGGCCGCAAGCAAACAACAAA 463
|||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 423 AAGTGAATGATGTTGTGAACAAGTTTGTAGGGAGCTACTTGGCTGCAAGCAAACAACAAA 482
Query 464 CAAGTGGTCAGAATGATGATGATGTGGTGTCTATGGCACATCAGATCTTCTCGAAAGATT 523
|||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 483 CAAGTGGTCAAAATGATGATGATGTGGTGTCTTTGGCACATCAGATCTTCTCAAAAGATT 542
Query 524 ATGGCTGCAAGTTTACTTGTGAGCATGCGTGGAGGGAGCTTAGATATGATCAAAAGTGGA 583
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 543 ATGGCTGCAAGTTTACTTGTGAGCATGCTTGGAGGGAGCTTAGATATGATCAAAAGTGGA 602
Query 584 TTGCTCAGTCTACTCATGGGAAAGCAAAGAGAAGAAAATGTGAAGCTGACTCTGA-CTCT 642
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 603 TTGCTCAGTCTACTCATGGGAAAGCAAAGAGAAGAAAATGTGAAGATGACTCTGAAC-CT 661
Query 643 GTTGGCGTTGAAGATAAGGAAGCTCGTCCCATTGGTGTTAAGGCTGCCAAAGCCGCAGCC 702
|||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 662 GTTGGCCTTGAAGACAAGGAAGCTCGTCCCATTGGTGTTAAGGCGGCCAAAGCCGCAGCC 721
Query 703 AAAGCCAAAGGCAAAGCCAAGCTAAGTCCGGTTGAAGGTGAAGAAACCAATGCTTTGAAG 762
||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 722 AAAGCCAAAGGAAAAGGCAAGCTAAGTCCGGATGAAGGTGAAGAAACCAATGCTTTGAAG 781
Query 763 GAGATACAAAGTATCTGGGAGATAAAACAGAAAGATCACG 802
|||||| ||||||| |||||||||||| ||||||||||||
Sbjct 782 GAGATAAAAAGTATATGGGAGATAAAAGAGAAAGATCACG 821
> AT5G28710.1 | Symbols: | transposable element gene | chr5:10757991-10758887
REVERSE LENGTH=897
Length=897
Score = 1000 bits (541), Expect = 0.0
Identities = 724/803 (90%), Gaps = 50/803 (6%)
Strand=Plus/Plus
Query 1 GATTCAATGAATCCATATCATCATACTTCAAGCTTTATAAACCTGTTGAACAGTCAAGAT 60
||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 4 GATTCAACGAATTCATATCATCATACTTCAAGCTTTATAAACCTTTTGAACAGTCAAGAT 63
Query 61 GACAGTCACATTCTCCCACCAAATCCATATGAATGCTTGGAACTTGGATCAACAAATGTC 120
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 GACAGTCACAATCTCTCACCAAATCCATATGAATGCTTGGAACTTGGATCAACAAATGTC 123
Query 121 CATGTGTTTAGCACTGAGTGGTCTGATGATGATCCAAGTGAAGATGAAGCACCAATTGCT 180
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 124 CCTGTGTTTAGCACTGAGTGGTCTGATGATGATCCAAGTGAAGATGAAGCACTAATTGCT 183
Query 181 GGGAAGAAAGGGAAGAAAGCCAAGAAACCAAGGAGGAATTGGTCATCAACTGAAGATGTT 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 184 GGGAAGAAAGGGAAGAAAGCCAAGAAACCAAGGAGGAATTGGTCATCAATTGAAGATATT 243
Query 241 GTTCTCATAAGTGGGTGGCTGAACACTTCCAAGGATCCGGTGGTGGGCAATGAGCAAAAG 300
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 244 GTTCTCATATGTGGGTGGCTGAACACTTCCAAGGATCCGATGGTGGGCAATGAGC-AAA- 301
Query 301 GGGGCAGCGTTCTGGGAACGTATAGCAGCCTACTACAACTCAAGTCCCAAGCTCAAAGGT 360
|| | ||| | ||| | | | || |||||| ||||||||||||
Sbjct 302 -----AG-G----GGG--C----AGC-G--T--T----CTGAAGTCCAAAGCTCAAAGGT 336
Query 361 GTGGA-AAAGAGAGGCCACATATGTTGTAAACAGAGGTGGTCATAAGTGAATGACGCCGT 419
||||| ||| ||||||||||||||||||||||| | ||| ||| ||||||||||| ||||
Sbjct 337 GTGGAGAAA-AGAGGCCACATATGTTGTAAACACATGTGATCAAAAGTGAATGACACCGT 395
Query 420 GAACAAGTTTGTAGGGAGCTACTTGGCCGCAAGCAAACAACAAACAAGTGGTCAGAATGA 479
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 396 GAACAAGTTTGTAGGGAGCTACTTGACCGCAAGCAAACAACAAACTAGTGGTCAGAATGA 455
Query 480 TGATGATGTGGTGTCTATGGCACATCAGATCTTCTCGAAAGATTATGGCTGCAAGTTTAC 539
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 TGATTTTGTGGTGTCTTTGGCACATCAGATCTTCTCGAAAGATTATGGCTGCAAGTTTAC 515
Query 540 TTGTGAGCATGCGTGGAGGGAGCTTAGATATGATCAAAAGTGGATTGCTCAGTCTACTCA 599
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 TTGTGAGCATGCTTGGAGGGAGCTTAGATATGATCAAAAGTGGATTGCTCAGTCTACTCA 575
Query 600 TGGGAAAGCAAAGAGAAGAAAATGTGAAGCTGACTCTGACTCTGTTGGCGTTGAAGATAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 576 TGGGAAAGCAAAGAGAAGAAAATGTGAAGCTGACTCTGACTCTGTTGGCGTTGAAGACAA 635
Query 660 GGAAGCTCGTCCCATTGGTGTTAAGGCTGCCAAAGCCGCAGCCAAAGCCAAAGGCAAAGC 719
|||||||||||||||| ||||||| |||||||||||||| | || || ||||
Sbjct 636 GGAAGCTCGTCCCATTAGTGTTAAAGCTGCCAAAGCCGC--C-AA-GC-AAAG------- 683
Query 720 CAAGCTAAGTCCGGTTGAAGGTGAAGAAACCAATGCTTTGAAGGAGATACAAAGTATCTG 779
| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 -----T----CCGGTTGAAGGTGAAGAAACCAATGCTTTGAAGGAGATACAAAGTATCTG 734
Query 780 GGAGATAAAACAGAAAGATCACG 802
|||||||||| | ||||||||||
Sbjct 735 GGAGATAAAAGATAAAGATCACG 757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39031932219
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5