BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492747
Length=1048
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21340.1 | Symbols: B70 | basic helix-loop-helix (bHLH) DNA-... 1373 0.0
> AT4G21340.1 | Symbols: B70 | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:11352985-11354776 FORWARD
LENGTH=1133
Length=1133
Score = 1373 bits (743), Expect = 0.0
Identities = 881/945 (93%), Gaps = 20/945 (2%)
Strand=Plus/Plus
Query 31 AAATCTAAACCATAGTCTACGTAACCAACAAGACATGACAGAAGAATTCGACACTACGGG 90
||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 47 AAA-CTAAACCATTGTCTACGTAACCAACAAAACATGACAGAAGAATTCGACACTACGGG 105
Query 91 AGTTTGTAACGGAACATGGTGGAGCTCCTCCAACGGCATGTTCTCCGGCTGTTCTCTGCC 150
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 106 AGTTTGTACCGGAACATGGTGGAGCTCCTCCAACGGCATGTTCTCAGGCTGTTCTCTGCC 165
Query 151 ACGTTCAGCGGAGATTGTCGTCGATCTCGGTG-GATTTGAATGGCAAAACATTGATACCC 209
|||||| ||||||||||| |||||| | |||| || ||||||||||||||||||||||||
Sbjct 166 ACGTTCCGCGGAGATTGTTGTCGATTTTGGTGAGA-TTGAATGGCAAAACATTGATACCC 224
Query 210 TTGATGCCAAAACCTACAATGAGAACTATCTTGA-TACTTCCACATTCTTAGGCAATACA 268
||||||||||||| ||||| |||||||| ||| | |||||||||||||||||||||| ||
Sbjct 225 TTGATGCCAAAACTTACAACGAGAACTACCTT-AGTACTTCCACATTCTTAGGCAATGCA 283
Query 269 AATCTTGATACCACCTCACAAATCTACGTTTCGAGTCAATCTAACATCCATGAAGAGGAA 328
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 284 AATCTTGATACCACATCACAAATCTACGTTTCGAGTCCATCTAACATCCATGAAGAAGAA 343
Query 329 CGATTCAATCAGATAAATAGTTTTCTAGAAGGATTGTTTGA---T--T---C---TA--- 374
|||| |||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 344 CGATACAATCAGATAAATAGTTTTCTAGAAGGATTGTTTGATTCTAGTGAGCAATTATTG 403
Query 375 -TTCCTAACTGTCCCAAACCAGAACTATTCGAAAGCTTTCACTTCTTTGATGACGTTTTC 433
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 GTTCCTAACTGTCCCAAACCAGAACTATTCGAAAGCTTTCACTTCTTTGATGACGTTTTC 463
Query 434 TCGAACGAATCAAGAATGATATCAGTCTTTGATCACGACAAACCCAAGGACGACATGCAA 493
||||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||
Sbjct 464 CCGAACGAATCAAGAATGATATCAGTATTTGATCACCAAAAACCCAAGGAAGACATGCAA 523
Query 494 GCCTGCAAGAGTATGATTACTTGCAAGAGAGCAAGTGAGAAAACTGAAGAACACGAAGAT 553
|| ||||||||| ||| ||| |||||||||||||||||||||| || ||||| |||||||
Sbjct 524 GCTTGCAAGAGTCTGACTACATGCAAGAGAGCAAGTGAGAAAAGTGGAGAACTCGAAGAT 583
Query 554 ATTGAGTCATCACAGCCATTAAAAAGGCCAAGGCTTGAGACACCATCTCATTTTCCGAGC 613
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 584 ATTGAGTCATCACAGCCATTAAAAAGGCCAAGACTTGAGACACCATCTCATTTTCCGAGC 643
Query 614 TTCAAAGTTCGTAAAGAGAAACTCGGAGATCGAATCACTGCGCTTCAACAGTTAGTTTCA 673
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 644 TTCAAAGTTCGTAAAGAGAAACTCGGAGATCGAATTACCGCGCTTCAACAGTTAGTTTCA 703
Query 674 CCCTTTGGCAAGACAGACACTGCTTCTGTCCTCCATGATGCTATAGAGTATATCAAGTTT 733
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 704 CCCTTTGGCAAGACAGACACTGCTTCTGTCCTCCATGATGCTATAGATTACATCAAGTTT 763
Query 734 CTACAAGAACATATCACTGAAAAGGTCTCGAGTAGTCCACACCTGAACTCTAAAGGATCT 793
||||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||
Sbjct 764 CTACAAGAACAAATCACTGAAAAGGTCTCTACTAGTCCACACCTGAACTCTATAGGATCT 823
Query 794 GGTGAACAGAAGCAGTGGTCAGACAAATCAAGCAATAATACTCATAATCAAGATTGTAGT 853
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 824 GGTGAACAGAAGCAGTGGTCAGACAAATCAAGCAATAATACTCATAATCAAAATTGTAGT 883
Query 854 CCAAGACTAGATCTTCCAAGCCGTGGTCTTTGTCTGATGCCGATCTCAAGTACTTTCTCC 913
||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 884 CCAAGACAAGATCTTCGAAGCCGCGGTCTTTGTCTGATGCCGATCTCAAGTACTTTCTCC 943
Query 914 ACTCCTCCACAGCATTTGGACGCATCTAGTTTCTGGAATTAGACT 958
|||||||| |||||||||||| |||||||||| ||||||||||||
Sbjct 944 ACTCCTCCGCAGCATTTGGACACATCTAGTTTGTGGAATTAGACT 988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51389532381
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5