BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492752
Length=824
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21310.1 | Symbols: | Protein of unknown function (DUF1218)... 1291 0.0
> AT4G21310.1 | Symbols: | Protein of unknown function (DUF1218)
| chr4:11339048-11340070 REVERSE LENGTH=876
Length=876
Score = 1291 bits (699), Expect = 0.0
Identities = 784/825 (95%), Gaps = 5/825 (1%)
Strand=Plus/Plus
Query 1 TAAAAGATAAAATTTTCTGATGAAAAAGAGAGGATCACAGCTAAATTTTATGCTCTTAAC 60
|||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 40 TAAAAGTTAAAATTTTCTCATGAAAAAGAGAGGATCACAGCTAAATTTTATTCTCTTAAC 99
Query 61 ATGATCTTTAGTAAAAATGCAAGAAAAGGAAACTTATGTTCAACTTTATTCTTATTCCAT 120
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 100 ATGATCTTTAGTACAAATGCAAGAAAAGGAAACTTATGTTGAACTTTATTCTTATTCCAT 159
Query 121 CCAACGAAGAGAGTTTCTTAAAGCTTAAAACTCTAATTGTCTATAAATTACAAGAACAAG 180
|||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 160 CCAACGAAGAGAGTCTCTCAAAGCTTAAAACTCTAATTGCCTATAAATTACAAGAACAAG 219
Query 181 TTAGTACTTCAACAACAATACTTTCTGCTTCTTTGTTTGCTGGTAATAATTTGTTTCATC 240
||| ||||||||||||||||||||||||||||||||||||| |||| || ||||||||||
Sbjct 220 TTATTACTTCAACAACAATACTTTCTGCTTCTTTGTTTGCTAGTAAGAACTTGTTTCATC 279
Query 241 GACAATGGCAAGAAATGTAGGGTTCTTTATCTGCATCTTGATCCTAGCCATGGATGTTTC 300
||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 280 GACAATGGCGAGGAATGTAGGGTTCTTCATCTGCATCTTGATCCTAGCCATGGATGTTTC 339
Query 301 AGCTGGAATTCTTGGCATTGAAGCCGAAATAGCTCAGAACAAGGTGAAGCATTTGAAGAT 360
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 GGCTGGAATTCTCGGCATTGAAGCCGAAATAGCTCAGAACAAGGTGAAGCATTTGAAGAT 399
Query 361 GTGGATTTTCGAGTGTAGAGACCCGAGTTACACAGCCTTCAAGTACGGTTTAGCTGCGTG 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 GTGGATATTCGAGTGTAGAGACCCGAGTTACACAGCCTTCAAGTACGGTTTAGCTGCGTG 459
Query 421 CATCCTTTTGGTGCTAGCCCATGTAACAGCTAATTTTCTCGGTGGGTGTCTCTGTGTTGC 480
||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 460 CATCCTTTTGGTGTTAGCCCATGTAACGGCTAATTTTCTTGGTGGGTGTCTCTGTGTTGC 519
Query 481 CTCAAGACAAGACCTTGAAAAATCCTCTGCCAATAAACAGCTTGCTGTGGCTTCTCTGAT 540
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 520 CTCAAGACAAGACCTTGAAAAATCCTCTGCCAATAAACAGCTCGCTGTGGCTTCTCTGAT 579
Query 541 ATTCTCCTGGTGGATCATATTGGCAATTGCATTCTCGATGTTGATCGTAGGGACGATGGC 600
|||| | ||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 580 ATTC-AC--GTGGATCATATTGGCGATTGCATTTTCGATGTTGATAGTAGGGACGATGGC 636
Query 601 AAACTCAAGATCAAGAAAAAACTGCGGGATATCGCACCATCGGGTTCTGTCCATAGGAGG 660
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 637 AAACTCAAGATCGAGAAAAAACTGTGGGATATCACACCATCGGGTTCTGTCCATAGGAGG 696
Query 661 GATCCTCTGTTTCATTCACGGCCTCTTTGCTGTTGCTTATTACATCTCTGCAACTGCTTC 720
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 GATCCTCTGTTTCGTTCACGGCCTCTTTGCTGTTGCTTATTACATCTCTGCAACTGCTTC 756
Query 721 AACACGAGAACAGACAAGCGCAGGCCACGCTTGAAAAATTTTCTACCCCGTTTTT-CCTT 779
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 757 AACACGAGAACAGACAAGCGCAGGCCACGCTTGAAAAATTTTCTACCC-GTTTTTTCCTT 815
Query 780 TCTATAAATTTAACGCAATGTTTAAGTTTGACTTAAAGATATATA 824
|||||||||||||| |||||||||| ||| || ||||| |||||
Sbjct 816 TCTATAAATTTAACCCAATGTTTAAACTTGTCTAAAAGAGATATA 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40137083453
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5