BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492758
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21240.1 | Symbols: | F-box and associated interaction doma... 483 2e-135
> AT4G21240.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:11322411-11323664 FORWARD LENGTH=1254
Length=1254
Score = 483 bits (261), Expect = 2e-135
Identities = 341/377 (90%), Gaps = 15/377 (4%)
Strand=Plus/Plus
Query 275 ACGGCTTGGTATGTTTCGGAGATTTTTACAAGATCATAGTTTGGAATCCTTCAATGAGAC 334
|||| ||||| ||||||||||| |||||||| ||| ||||||||||||||||||||||||
Sbjct 398 ACGGTTTGGTGTGTTTCGGAGACTTTTACAATATCGTAGTTTGGAATCCTTCAATGAGAC 457
Query 335 AACATGTTACCTTACCCGAACCCAAA-C-C-TAG-A--GTCATGTACTTTATACGTAGCT 388
|||||||||| ||||||||||| ||| | | || | |||| |||||||||||||||||
Sbjct 458 AACATGTTACATTACCCGAACCTAAACCACACAGTACTGTCAGGTACTTTATACGTAGCT 517
Query 389 GTTTAGGACACGATCCGGTCGAGGATAAGTATAAAGTATTGAGCATCTCAGGCTACCACA 448
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 518 GTTTAGGATACGATCCGGTCGAGGATAAGTATAAAGTATTGTCCATCTCAGGCTACCACA 577
Query 449 AAGGCCACCACGATCCTCTCGTTTTTACATTGGGACCTCAAGAATCATGGAGAGTGGTCC 508
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 578 ATGGCAACCACGATCCTCTCGTTTTTACATTGGGACCTCAAGAATCATGGAGAGTGATCC 637
Query 509 AAAATAGCCCTTTACATATCCCTCTACCAACCATG-GGA-C--GAGTAGGTATATGCATC 564
|||||||||||||| ||||||||||||||||| | ||| | ||||||||| |||||||
Sbjct 638 AAAATAGCCCTTTAGATATCCCTCTACCAACCG-GAGGATCACGAGTAGGTACATGCATC 696
Query 565 AACGGGCACGTGTATTATGAAGCGGAGATACGTTTTAAAGTAGATGATACTTTTGAATTT 624
|||||||||||||| ||||||||| |||||||||||||||||||||||| |||| |||||
Sbjct 697 AACGGGCACGTGTACTATGAAGCGCAGATACGTTTTAAAGTAGATGATATTTTT-AATTT 755
Query 625 -GAAAGA-ATCCTTATG 639
|||| | |||||||||
Sbjct 756 TGAAA-ATATCCTTATG 771
Score = 372 bits (201), Expect = 4e-102
Identities = 246/268 (92%), Gaps = 2/268 (1%)
Strand=Plus/Plus
Query 8 GAGGAGGAGAAGAAGAAACGGAATCTGAGGAAGACGAGAGTCGTATTGGTAAGATTTTCG 67
||| ||| ||| |||||| ||||| | ||||||||||| ||| |||||||||||||||
Sbjct 43 GAGAAGG-GAACAAGAAA-TCAATCTAAAGAAGACGAGAGCCGTCTTGGTAAGATTTTCG 100
Query 68 AGCTGATTCCTCTTGATCTGACTCCTGATATACTCTTGAGACTGCCCGCTAAATCTGCTG 127
||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 101 AGCTGATACCTCTTGATATGATTCCTGATATACTCTTGAGACTGCCCGCTAAATCTGCTG 160
Query 128 TGAGGTTCCGCGTCGCCTCGAAGCTATGGTCATCCATCACCACTCGTCCAGATTTCATCA 187
|||||||||| ||| |||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 161 TGAGGTTCCGTATCGTCTCGAAGCTATGGTTATCCATCACCACTCGTCCATATTTCATCA 220
Query 188 GGTCGTTCGCGTTTCATTCTTCAACTCGGCTTTGTCTTATGGCATGCGTCAAAGCAAGAG 247
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 221 GGTCGTTCGCGTTTCCTTCTTCAACTCGGCTTTGTCTTATGGCCTGCGTCAAAGCAAGAG 280
Query 248 ACAAGCGTTTATTTATCTCACTGCGCCA 275
||| |||||||||||||||||||| |||
Sbjct 281 ACATGCGTTTATTTATCTCACTGCACCA 308
Score = 292 bits (158), Expect = 3e-78
Identities = 194/211 (92%), Gaps = 3/211 (1%)
Strand=Plus/Plus
Query 634 CTT-ATGCTCAACTACCATGGAAAATTAGCATGGTTTTGCTACGGTTTTTCTTCTATAAG 692
||| |||||||||||||| |||||||||||||||||||||| || || ||||||||||||
Sbjct 837 CTTCATGCTCAACTACCAAGGAAAATTAGCATGGTTTTGCTCCGATTATTCTTCTATAAG 896
Query 693 GTTTTGGGTTTTAGTTGATGGAGACAAACAAGAATGGTCGCTCATAAACTTTGTTTTGCC 752
|||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 897 GTTTTGGGTTTTAGATGATGGAGACAAACAAGAATGGTCGCTCAAAAACTTTATTTTGCC 956
Query 753 TTTTCCAACCTTTCCTCAAAGTGACCCGATCTTTGAATGTAGTCTGAAT-CTGACTGGTG 811
|||||||| || |||| ||| |||||| |||||||||||||| || || ||||||||||
Sbjct 957 TTTTCCAATCTCTCCTGAAATTGACCCCATCTTTGAATGTAGAGTG-ATGCTGACTGGTG 1015
Query 812 TTACTCATGATACTGGTGAGTTCATTTTTAT 842
|||||||||||||||||||||||||||||||
Sbjct 1016 TTACTCATGATACTGGTGAGTTCATTTTTAT 1046
Score = 235 bits (127), Expect = 6e-61
Identities = 165/183 (90%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 838 TTTATATATTATGATCCAAAGAGAGAGCGTGAAAGGAGGATCGAGTATGAAGGGATTGGA 897
||| ||||||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 1076 TTT-TATATTATGATCCAAAGAGTGGGAGTGAAAGGAGGATCGAGTATGAAGGGATTGGA 1134
Query 898 GACAAAGAATTGTGGATTCATAATGGAATTTTGGAGAATAACCGCGGTCTCACTATTGAT 957
|||| |||||| || ||| ||| ||||||||||||| || | || |||||||||||
Sbjct 1135 GACAGAGAATTCTGTATTAATACTGGAATTTTGGAGTGCAA--AC-GTTTCACTATTGAT 1191
Query 958 TGGTTTCCCAATCATAATGAGAGTCTCATGTCTTTGGTTAATGTCCTTATAAAGGCCGAT 1017
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1192 TGGTTTCCCAATCATAATGAGAGTCTCATGTCTTTGGTTAATGTCCTTAAAAAGGCCGAT 1251
Query 1018 TAG 1020
|||
Sbjct 1252 TAG 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49982976265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5