BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492759
Length=2018
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21230.1 | Symbols: CRK27 | cysteine-rich RLK (RECEPTOR-like... 3016 0.0
> AT4G21230.1 | Symbols: CRK27 | cysteine-rich RLK (RECEPTOR-like
protein kinase) 27 | chr4:11319139-11321679 REVERSE LENGTH=2034
Length=2034
Score = 3016 bits (1633), Expect = 0.0
Identities = 1904/2034 (94%), Gaps = 22/2034 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCTACTTCAATAATGctttcttctctt-ttttccatcttcttcttgactttttt 59
||||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||
Sbjct 1 ATGGCTTCTACTTCAATAATGCTTTCTTC-CTTCTTCTCCTTCTTCTTCTTGACTTTTTT 59
Query 60 tGTCACTTATGCTCAGCAAAACGTCACCGTTCACACCATTTGCTACTATGATGGAGGCAA 119
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 60 TGTCACTTATGCTCAGCAAAACGTCACCGTTCACACAATTTGCTACTACGATGGAGGTAA 119
Query 120 CTTCACATCCAACTCTTCATATTCTCTTAATCTCAACCGTCTGATCTCTTCTCTACCTGA 179
||||||||||||| |||||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct 120 CTTCACATCCAACACTTCATATTCCCTTAATCTCAACCGTCTGATCTCGTCTTTACCTGA 179
Query 180 TCTAACTCCAACAATCAACGGCTTCTACAACATCTCCACCAATGGAGAAGTCAACGCAAT 239
|||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| ||
Sbjct 180 TCTAACTCCAACCATCAACGGCTTCTACAATATCTCCATCAATGGAGAAGTCAACGCCAT 239
Query 240 AGCTTTGTGCAGAGGAGATGTCAAACCAAATCAAGATTGCATCACTTGCATCACAACTGC 299
|||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || ||
Sbjct 240 AGCTTTATGCAGAGGAGATGTCAAGCCAAATCAAGATTGCATCAGTTGCATCACCACCGC 299
Query 300 CGCAAAACAGCTTGTAGAAAGCTGTCCTAACATCATCGAAGCTGATATTTGGCTCGAGAA 359
|||||| ||||| ||||| |||||||| |||||||||||||| |||||||||| |||||
Sbjct 300 CGCAAAGCAGCTCGTAGAGAGCTGTCCAAACATCATCGAAGCCAATATTTGGCTTGAGAA 359
Query 360 ATGCATGTTTCGCTACACAAGTCGAATCATTTTAGGTCAAATGGAGCCGGTTCCTTTTTC 419
|||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 360 ATGCATGTTTCGTTACACAAGTCGAATTATCTTAGGTCAAATGGAGCCGGTTCCTTTTTC 419
Query 420 CTACACATCAAGCAATCTTAGCGTAACAGACAAGGAAGGTTTCAGCAAGGGTTTAGGTGA 479
|| |||||||| ||| |||| || |||||||||||||||||||||||||||||||||||
Sbjct 420 TTATACATCAAGTAATGTTAGTGTGACAGACAAGGAAGGTTTCAGCAAGGGTTTAGGTGA 479
Query 480 GCTATTGGATTCATTGGGAG-AGAAAATCGACACTGCGAATGAGACTGAAGAGATTAAGT 538
|||||||||||||| |||| | |||||||| ||||||||||||| ||||| ||||||
Sbjct 480 CCTATTGGATTCATTAGGAGCA-AAAATCGATGCTGCGAATGAGACCAAAGAGGTTAAGT 538
Query 539 TTGCAGCAGGAGTGACAGGGTCTATCTACGCGTTGGCTCAGTGTACACCAGATTTGTCTG 598
||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||
Sbjct 539 TTGCAGCAGGAGTGAAAGGAACGATCTACGCGTTGGCTCAGTGTACACCAGATTTGTCTG 598
Query 599 AATCAGATTGTAGAATCTGTCTTGCTCAGATCTTTGCTGGAGTTCCTACTTGTTGTGATG 658
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 599 AATCAGATTGTAGAATCTGTCTTGCTCAGATCTTTGCTGGAGTTCCCACTTGTTGTGATG 658
Query 659 GAAAGACAGGTGGATGGTGGACGAATCCAAGTTGTTATTTCAGGTTTGAACAGTATCCGT 718
|||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||
Sbjct 659 GAAAGACAGGTGGATGGTGGACTAATCCAAGTTGCTATTTCAGGTTTGAAGTGTATCCGT 718
Query 719 TTTTCGATCTTTCGGTTATTTCAGAACAGATA-CAACCTCTTTCTCCTCATAACAATAAC 777
||||||||||||| |||| ||||||||||| | |||||||||||| ||||||| ||||||
Sbjct 719 TTTTCGATCTTTCAGTTACTTCAGAACAGA-AGCAACCTCTTTCTTCTCATAATAATAAC 777
Query 778 ACCAGAAGAAGTGATCAAGGAAACAGTAAAGACCGGTCCAAAACACTCATCTTTGCGGTG 837
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 778 ACCAGAAGAAGTGATCAAGGAAAAAGTAAAGACCGGTCTAAAACTCTCATCTTTGCGGTG 837
Query 838 GTTCCCATTGTGGCGATTGTATTAGTTTTTATCTTTCTCTTTATCTACTTAATGAGGAGG 897
||||||||||||||||| |||||| | || | ||||||||||||||||||| |||||||
Sbjct 838 GTTCCCATTGTGGCGATCATATTAGGTCTTGTGTTTCTCTTTATCTACTTAAAGAGGAGG 897
Query 898 AAGAAGAAGAAGACTCTGAAGGATAATGCTGAAAATGAATTTGAGAGTGCAGACTCATTG 957
| ||| |||||||| |||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 898 AGGAAAAAGAAGACCCTGAAGGAAAATGCTGAAAATGAATTTGAGAGTACAGACTCATTG 957
Query 958 CATTTTGATTTTGAGACCGTAAGAGTAGCAACAGATGATTTTGCTTTAACGAATAAGATC 1017
|||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 958 CATTTTGATTTTGAGACCATAAGAGTAGCAACAGATGATTTTTCCTTAACGAATAAGATC 1017
Query 1018 GGTGAAGGTGGTTTTGGGGTTGTCTACAAGGGTCATCTTCCAGATGGGCAAGAGATAGCT 1077
||||||||||||||||| |||||||||||||||||||| |||||||| | ||||||||||
Sbjct 1018 GGTGAAGGTGGTTTTGGCGTTGTCTACAAGGGTCATCTCCCAGATGGACTAGAGATAGCT 1077
Query 1078 GTGAAAAGGTTATCGATACACTCAGGACAAGGCAATGCAGAGTTTAAGACTGAAGTACTC 1137
|||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1078 GTGAAAAGGTTATCCATACATTCAGGACAAGGCAATGCAGAGTTTAAGACAGAAGTACTC 1137
Query 1138 TTAATGACTAAGCTGCAACACAACAATCTTGTTAAACTCTTTGGTTTCTCCATCAAAGAA 1197
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1138 TTAATGACTAAGCTGCAACACAAGAATCTTGTTAAACTCTTTGGTTTCTCCATCAAAGAA 1197
Query 1198 TCTGAAAGACTTCTTGTCTATGAGTTTATCCCAAATACAAGTCTTGATCGGTTCTTGTTC 1257
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TCTGAAAGACTTCTTGTATATGAGTTTATCCCAAATACAAGTCTTGATCGGTTCTTGTTC 1257
Query 1258 GATCCTATCAAGCAGAAGCAACTAGACTGGGAAAAACGGTACAATATCATCGTAGGAATT 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1258 GATCCTATCAAGCAGAAGCAACTAGACTGGGAAAAACGGTACAATATCATCGTAGGAGTT 1317
Query 1318 TCCCGGGGATTGCTTTACCTACACGAAGGCTCAGAGTTTCCGATAATCCACCGTGATCTC 1377
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1318 TCCCGGGGATTGCTTTACCTACACGAAGGCTCGGAGTTTCCGATAATCCACCGTGATCTC 1377
Query 1378 AAATCCTCCAATGTGCTTTTAGATGAACAAATGCTACCTAAGATCTCAGATTTTGGAATG 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 AAATCCTCCAATGTGCTTTTAGATGAACAAATGCTACCTAAGATCTCAGATTTTGGAATG 1437
Query 1438 GCAAGACAATTCGATTTCGATAGA-ACTCAAGCAATAACAAGAAGAGTTGTTGGAACTTA 1496
|||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||
Sbjct 1438 GCAAGACAATTCGATTTCGATA-ATACTCAAGCAGTAACAAGAAGAGTTGTTGGAACTTA 1496
Query 1497 TGGATACATGGCCCCAGAGTATGCAATGCACGGAAGATTCTCAGTGAAAACAGATGTTTA 1556
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TGGATATATGGCTCCAGAGTATGCAATGCACGGAAGATTCTCAGTGAAAACAGATGTTTA 1556
Query 1557 TAGCTTTGGAGTTCTTGTTCTTGAGATCATTACAGGTAAAAGAAACAGTGGATTAGGGCT 1616
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1557 TAGCTTTGGAGTTCTTGTACTTGAGATCATTACAGGTAAAAGAAACAGTGGATTAGGTCT 1616
Query 1617 TGGTGAAGGCACCGATCTCCCAACTTTTGCTTGGCAAAATTGGATTGAAGGAACATCAAT 1676
||||||||| || |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1617 TGGTGAAGGAACAGATCTCCCCACATTTGCTTGGCAAAATTGGATTGAAGGAACATCAAT 1676
Query 1677 GGAACTAATAGATCCTGTTCTTCTGGAATCTTACAACAAGAAACAATCAATGCAATGCTT 1736
||||||||||||||||||||||||| || || || |||||||| ||||||||||||||||
Sbjct 1677 GGAACTAATAGATCCTGTTCTTCTGCAAACTCACGACAAGAAAGAATCAATGCAATGCTT 1736
Query 1737 TGAAATTGCTCTGTCTTGTGTTCAAGAGAATCCTTCAAAAAGACCAACAATGGATTCAGT 1796
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1737 AGAAATTGCTCTGTCTTGTGTTCAAGAGAATCCTACAAAAAGACCAACTATGGATTCAGT 1796
Query 1797 TGTTTCAATGCTTAGCTCTGATTCTGAGTCTC-TCCAGCTTCCAAAACCATCGCAGCCTG 1855
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1797 TGTTTCAATGCTTAGCTCTGATTCTGAGTCTCGTC-AGCTTCCAAAACCATCGCAGCCTG 1855
Query 1856 GATTCTTCAGAAGATCAGCGTCGTTTTCGATTTCTTTAAACGATGTTTCTCTCACAGATT 1915
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1856 GTTTCTTCAGAAGATCAGCGTCGTTTTCGATTTCTTTAAATGATGTTTCTCTCACAGATT 1915
Query 1916 TGTCTGCGCGTTAAGTGTT-GCAGTCACACAA---AGT----TTCAATTTTTAAACCCTA 1967
||||||| ||||| || || |||||||||||| || ||||||||||||||||||
Sbjct 1916 TGTCTGCACGTTAGGTTTTTGCAGTCACACAATGGAGGAAGATTCAATTTTTAAACCCTA 1975
Query 1968 AAATTTAGTTTTATAGGAATGTTT-T--ATTCTGCGAAAGTTTAATGCTTTTTT 2018
|| |||| |||||||||||||||| | ||||||| ||||||||||||||||||
Sbjct 1976 AA-TTTACTTTTATAGGAATGTTTATGTATTCTGCTAAAGTTTAATGCTTTTTT 2028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99999485640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5