BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492760
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21215.2 | Symbols: | unknown protein; Has 35333 Blast hits... 1890 0.0
> AT4G21215.2 | Symbols: | unknown protein; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:11310385-11313709
REVERSE LENGTH=1305
Length=1305
Score = 1890 bits (1023), Expect = 0.0
Identities = 1151/1208 (95%), Gaps = 28/1208 (2%)
Strand=Plus/Plus
Query 1 GAAAAAATGGGCAACATAAATAAAAAGTAAAA-GGCTCTCTCTCCTTTCTTTCAGTTTCG 59
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 GAAAAAATGGGCAACATAAATAAAAAGTAAAAGGGCTCTCTCTCCTTTCTTTCAGTTTCG 60
Query 60 ACATTCCCCAGAATCTCTCTCTTCCCTTTTTGTCTCCAACCAAAACAAAACCTTAATCAC 119
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACATTCCCCAGAA--TCTCTCTTCCCTTTTTGTCTCCAACCAAAACAAAACCTTAATCAC 118
Query 120 CTTTCTTCTTCTTTAAACAGAGAGCATAACAGAGACGTTAGTTCCCACTCTGTCTTAATC 179
||||||||||||| |||| |||||| |||||||||||| ||||||||||||||||||||
Sbjct 119 CTTTCTTCTTCTTCAAAC--AGAGCACAACAGAGACGTTCGTTCCCACTCTGTCTTAATC 176
Query 180 TCCTCTGTTTCAATTCTAAAGTAAATCGATGGAAACCGGTGGAACAATTCCGGGTCAAGA 239
||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 177 TCCCCTGTTTCAATTC----CTAAATCGATGGAAAACGGTGGAACAATTCCGGGTCAAGA 232
Query 240 AATCGGATCCGGGTTTCAAAAACCCGTTAACCCAGATGGGTTTGTGACGATCGATGTCGA 299
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 233 AATCGGATCAGGGCTTCAAAAACCCGTTAACCCAGATGGGTTTGTGACGATCGATGTTGA 292
Query 300 AAGTTTCTCTAATGTCATCCACAAAGACTTCTCTTCTTCTAGTCCAAGAATTACTTTGCA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 AAGTTTCTCTAATGTCATCCACAAAGACTTCTCTTCTTCTAGTCCAAGAATTACTTTGCA 352
Query 360 GAGAAATGTATCGAGGAAAGGGTCTCCAAGAAGCAACAACGAGAGAAAACTCCATTTTGA 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 GAGGAATGTATCGAGGAAAGGGTCTCCAAGAAGCAACAACGAGAGAAAACTCCATTTTGA 412
Query 420 CGCAAATGGTAATGACAAGGAGACCTCATTTCCTCAGTCCCCACTTAGAGGGTCAAGCAC 479
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 413 CGCAAATGGTAATGACAAGGAGATCTCATTTCCTCAGTCCCCACTTAGAGGGTCAAGCAC 472
Query 480 GCCGGAAAAGCCTAACACCGTGGGGCCCACAGAACATGCAGGCACGGCCACAACCGCTGC 539
|||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 473 GCCGGAAAAGGCTAGCACCGTGGGCCCCACAGAACATGCAGGCACGGCCACAACCGCTGC 532
Query 540 CACAGCTGTTTCAGCCTCGCAGCTTCATCAGATCACCATTACTACGGCTGCCACGCCCGC 599
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||
Sbjct 533 CACAGCTGTTTCAGCCTCGCCGCTTCATCAGATCACCGTTACTACGGCTGCCACGGCCGC 592
Query 600 CGGAAATGTGATTACCGACCAAAATAGAGAAAGAAGGTTCGGTTTTTCGAGGAAATCGAG 659
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AGGAAATATGATTACCGACCAAAATAGAGAAAGAAGGTTCGGTTTTTCGAGGAAATCGAG 652
Query 660 TTTTAAACGCTCTCATACTTCTTGGATGCTTGATCCGAAGAAAATCGTGCTCTTCTTTGC 719
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 653 TTTTAAACGCTCTCACACTTCTTGGATGCTTGATCCGAAGAAAATCGTCCTCTTCTTTGC 712
Query 720 AACTTTGTCAAGCATGGGATCAATCTTGTTAATCATATTCACACTCTCGATCAGCAAGTC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 AACTTTGTCAAGCATGGGATCAATCTTGTTAATCATATTCACACTCTCGATCAGCAAGTC 772
Query 780 CAATCCCGGAGATATGCCTTTAGACTAATAGTAAACACAAGAAGAGCATtatatataacg 839
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 773 CAATCCCGGAGATATGCCTCTAGACTAATAGTAAACACACGAAGAGCATTATATATAACG 832
Query 840 catatatatatCATCGACCGACCTAAGTTTGTGGCCATAGAACATGCCACAGTCTCACCG 899
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 CATATATAT--CATCGACCGACCTAAGTTTGTGGCCATAGAACATGCCACAGTCTCACCG 890
Query 900 ACCTACATTTGA-GGAGATGTATCAGACAGAAGAACATTACAAAAAATGAAGAGGGTAAG 958
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 ACCTACATTTTAAGGAGATGTATCAGACAGAAGAACATTACAAAAAATGAAGAGGGTAAG 950
Query 959 GTTGTGATAATAGTTTTATTTCGTATGAttttttttaaaaaaatggaaaacaaaa-aa-a 1016
||||||||||||||||||||||||||||||||||||||| || |||| |||| || |
Sbjct 951 GTTGTGATAATAGTTTTATTTCGTATGATTTTTTTTAAA----TG-AAAA-AAAAGAAGA 1004
Query 1017 agaaaaCAGTAAGAGAGAGA-AA-GTGGGAAGTGGGCACGCACGAGATCATATGGGAGAT 1074
||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1005 AGACAACAGTAAGAGAGAGAGAAAGTGGGAAGTGGGCACGCACGAGATCATATGGGAGAT 1064
Query 1075 TGGAAAAGAAAAGCTTAAGACAAGAGTTTACGACTATTGTGACAAAGACAGAGAATCTTC 1134
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1065 TGGAAAAGAAA-GCTTAAGACAAGAGTTTATGACTATTGTGACAAAGACAGAGAATCTTC 1123
Query 1135 TCTTCTGTTCTTTTAAATTCtttttttcctctgtttttt-tAAAAACATTTATTTATCGA 1193
||||||||||||| |||||||||||| | |||||||||| | ||| ||||||||||||
Sbjct 1124 TCTTCTGTTCTTTCAAATTCTTTTTT-C-TCTGTTTTTTCTTTAAA--TTTATTTATCGA 1179
Query 1194 GTATGTGT 1201
||||||||
Sbjct 1180 GTATGTGT 1187
Score = 117 bits (63), Expect = 3e-25
Identities = 79/86 (92%), Gaps = 3/86 (3%)
Strand=Plus/Plus
Query 1195 TATGTGTACATATCAATTGTGGTGACTGGTGAGCAATTTTCAGCTTTCGTTTGGTTT-AT 1253
||||||||||||||||||||||||||||||||| |||||| || ||||||||||||| |
Sbjct 1212 TATGTGTACATATCAATTGTGGTGACTGGTGAGTAATTTT-AG-TTTCGTTTGGTTTTAC 1269
Query 1254 CTTTTCCAAATATATAGAGAAAGTCT 1279
||||||||||||||| |||||| |||
Sbjct 1270 CTTTTCCAAATATATTGAGAAACTCT 1295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62901282885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5