BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492762
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21210.1 | Symbols: ATRP1, RP1 | PPDK regulatory protein | c... 2200 0.0
> AT4G21210.1 | Symbols: ATRP1, RP1 | PPDK regulatory protein |
chr4:11306945-11308742 FORWARD LENGTH=1424
Length=1424
Score = 2200 bits (1191), Expect = 0.0
Identities = 1330/1397 (95%), Gaps = 9/1397 (1%)
Strand=Plus/Plus
Query 1 aaaaaaacaaaaagaaagaa-aaagaaaTGGCTTTTCTTTCGGCGATGAAGTTGCAGGGA 59
||||||| ||||| |||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 31 AAAAAAAAAAAAAAAAAGAATAAAGAAATGGCTTTGCTCTCGGCGATGAAGTTGCAGGGA 90
Query 60 CGTCCACCATCGATCTCATCCAATCTCAACCCAAATTCCAAACCTGCAGGTTCGGATTCC 119
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 91 CGTCCACCACCGATCTCGTCCAATCTCAACCCAAATTCCAAACCTGCAGGTTCGGATTCC 150
Query 120 GTTTCCTTAAACACCTCTGAACCTGGCTCCGAACGGAAGCCTCGAAAATTCAGCTCACAG 179
|||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 151 GTTTCCTTAAACGCCTCCGAACCTGGCTCCGAACGGAAGCCTCGGAAATTCAGCTCACAG 210
Query 180 CTAAACCGCTGGAACAGAGCAAGAACCTTAAAATCCGGCGCGAAGCTAGACCGTACGATT 239
||||||||||||||||||||| ||||||||| || ||||||||||| ||| ||||||||
Sbjct 211 CTAAACCGCTGGAACAGAGCACGAACCTTAAGGTCTGGCGCGAAGCTGGACAGTACGATT 270
Query 240 GCTAATGGATCAAACAGTACGAACGGTCCGATGCGTCCAATCGAAAGTTCGAATCGCTCT 299
||||||||||||||| ||||| ||||||||||||||| ||||||||||||| |||| ||
Sbjct 271 ACTAATGGATCAAACAATACGACCGGTCCGATGCGTCCGATCGAAAGTTCGAGTCGCACT 330
Query 300 GATGTTTCGACACTT-GACAGTGACGTGTCATCATCAAGTAACGGAGATAACGAGACGGA 358
|||||||||||| || ||||| ||||||||||||||||||||||||| || |||| ||||
Sbjct 331 GATGTTTCGACA-TTGGACAGCGACGTGTCATCATCAAGTAACGGAGTTAGCGAGGCGGA 389
Query 359 TATGACGGCGGCTAAGTCGATTTACATAGTCTCTGACGGAACTGGTTGGACGGCGGAACA 418
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 390 TATGACGGCGGCGAAGTCGATTTACATAGTCTCTGACGGAACTGGATGGACGGCGGAACA 449
Query 419 CGCCGTTAACGCTGCCTTGGGCCAATTCGATTATTGCTTGGTCGACCGTGGTTGTCCCGT 478
||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 450 CGCCGTTAACGCTGCTTTGGGACAATTCGACTATTGCTTGGTCGACCGTGGTTGTCCCGT 509
Query 479 TAATACACATCTCTTCTCAGGGATTGAAGATGGAGG-GAAGTTAATGGAGATCATAAAGC 537
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 510 TAATACACATCTCTTCTCAGGGATTGAAGATGG-GGAGAAGTTAATGGAGATCATAAAGC 568
Query 538 AAGCAGCAAAAGAAGGAGCAATGGTAATCTACACTTTAGCTGATCCATCAATGGCAGAAG 597
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 AAGCGGCAAGAGAAGGAGCAATGGTAATCTACACTTTAGCTGATCCATCAATGGCAGAAG 628
Query 598 CAACCATGAGAGCTTGCAAGCTATGGAAAATCCCATCACTAGACATTCTTGGACCAATCA 657
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 629 CAACCATGAGAGCTTGCAAGCTATGGAAAATCCCATCATTAGACATTCTTGGACCAATCA 688
Query 658 CAGACTCAATCTCTTCTCACTTAGGCACTAATCCTTCCGGTCTTTCACGTGGCATAACAA 717
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 CAGAGTCAATCTCCTCTCACTTAGGCACTAATCCTTCCGGTCTTTCACGTGGCATAACAA 748
Query 718 ACTCATCTCTCAACGAAGACTACTTCAAAAGAATCGAAGCTATCGAATTCACTATCAAAC 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 ACTCATCTCTCAACGAAGACTACTTCAAAAGAATCGAAGCTATCGAATTCACTATCAAAC 808
Query 778 ACGACGACGGTGCCTTGCCGGAGAATCTTGAAAAAGCTGACATTGTTCTTGTAGGTGTTT 837
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 809 ACGACGACGGTGCCTTGCCCGAGAATCTTGAAAAAGCTGACATTGTTCTTGTAGGTGTCT 868
Query 838 CTAGAACAGGGAAGACACCACTCTCTACTTACTTAGCTCAAAAGGGTTACAAAGTATCTA 897
|||| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 869 CTAGGACAGGGAAGACACCACTCTCGACTTACTTAGCTCAAAAGGGCTACAAAGTCTCTA 928
Query 898 ACGTACCGATCGTGAACGGTGTAGATCTTCCCAAGACTCTGTTTGAGATCGACCCGAGAA 957
|||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 929 ACGTACCGATTGTGAACGGTGTTGATCTTCCCAAGACTTTGTTTGAGATCGACCCGAGAA 988
Query 958 AGGTTTTTGGTCTGATGATTAATCCGGTGGTGTTGCAAGGGATAAGAGAGGCAAGAGCCA 1017
||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 989 AGGTTTTTGGTTTGATGATTAATCCATTGGTGTTGCAAGGGATAAGAGAGGCTAGAGCCA 1048
Query 1018 AGAGTCTTGGACTTGGTTCGAGTTTTAAGACTAAGTACTCTGAGTTGGGTTCTGTTAAAG 1077
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1049 AGAGTCTTGGACTTGGTTCGAGTTTTAAGACTAAGTACTCTGAGTTAGGTTCTGTTAAAG 1108
Query 1078 AAGAGCTTGAGCTTGCCAAGAGAATCTTTGCTGAGAATCCGACTTGGCCAGTGATTGAAG 1137
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1109 AAGAGCTTGAGCTTGCCAAGAAAATCTTTGCAGAGAATCCGACTTGGCCAGTGATTGAAG 1168
Query 1138 TGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTGAGGCTTTACGATGAGAGAC 1197
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1169 TGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTAAGGCTTTACGATGAGAGAC 1228
Query 1198 AAAGCAATCGAGCAATGCCTCGCATCTCTAAAAGCTACTAAATGATTATTATTCAAAGAT 1257
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 AAAGCAATAGAGCAATGCCTCGCATCTCTAAAAGCTACTAAATGATTATTATTCAAAGAG 1288
Query 1258 GATTT-AAATTAAGGTGGAAG-A-ATATATAGAGAAAATATAAATTGATAAAACTCTTTT 1314
||||| ||||||||||| ||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 1289 GATTTGAAATTAAGGTGTAAGGATATATATAGAGAAAATATGAATTGATAAAACTCTTTT 1348
Query 1315 GTAAAAGCCCATTGGCACATTTTTACATGACCTTATTATTGGGTCAAAGCTAAAATCCAT 1374
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1349 GTAAA-GCCCATTGGCACATTTTTACATGACCATATTATTGGGTCAAAGCTAAAATCCAT 1407
Query 1375 ACAAATATTTCATTATT 1391
|||||||||||| ||||
Sbjct 1408 ACAAATATTTCACTATT 1424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68523743925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5