BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492766
Length=2322
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21180.1 | Symbols: ATERDJ2B | DnaJ / Sec63 Brl domains-cont... 3574 0.0
AT1G79940.1 | Symbols: ATERDJ2A | DnaJ / Sec63 Brl domains-cont... 1399 0.0
AT4G21190.1 | Symbols: emb1417 | Pentatricopeptide repeat (PPR)... 285 1e-75
> AT4G21180.1 | Symbols: ATERDJ2B | DnaJ / Sec63 Brl domains-containing
protein | chr4:11288913-11292389 FORWARD LENGTH=2335
Length=2335
Score = 3574 bits (1935), Expect = 0.0
Identities = 2212/2343 (94%), Gaps = 29/2343 (1%)
Strand=Plus/Plus
Query 1 TTCTTCTTCGTCTTCTTCAGTTTCGCAATTCGATTCCTAAAGTCAGCAGTTTTGTTTCTT 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCTTCTTCTTCTTCTTCAGTTTCGCAATTCGATTCCTAAAGTCAGCAGTTTTGTTTCTT 60
Query 61 CAATTTCTTCTCTGATCAAGT-GTTTCTGC-AGAATCTCTGATTTAAAGGGCTC-TT--C 115
|| ||||||||| | | | | || | | ||||||||||||| ||||||||| ||
Sbjct 61 CAGTTTCTTCTCAAACCGA-TACTTGAT-CAAGAATCTCTGATTGAAAGGGCTCTTTAAA 118
Query 116 ATCAACAAGAAGGGTCTAAAAGATGGCAGAATCAGAAGAGAATAGCGTTTTGTTTCCCAT 175
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AT-AAGAAGAAGGGTCTAAAAGATGGCAGAATCAGAAGAGAATAGCGTTTTGTTTCCCAT 177
Query 176 TTTTATTTTGACAATGATGGCAATTCCATTGGTGCCTTATACATTTGTGAAGCTAAGCCG 235
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 178 TTTCATTTTGACAATGATGGCAATTCCATTGGTTCCTTATACATTTGTGAAGCTAAGCCG 237
Query 236 CGCTTTTTCGAAGAAACAACGGAGCATACATTGTCAATGTCTTGAATGTGATCGTTCAGG 295
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 238 CGCTTTTTCTAAGAAACAACGGAGTATACATTGTCAATGTCTTGAGTGTGATCGTTCAGG 297
Query 296 GAAGTACAAGAGATCCATTTCTCAAAGAATCTCTAGCTTCACTTCATGTAGCAACTTGAC 355
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 298 GAAGTACAAGAGATCCATTTCTCAAAGTATCTCTAGCTTCACTTCTTGTAGCAACTTGAC 357
Query 356 AGTTGTGCTACTTTGGATTGTAATGATCTTCTTGATCTATTACACTAAGAACATTAGCCG 415
|||||| ||||||||||||||||||||||||||||| ||| | ||||||||||| |||||
Sbjct 358 AGTTGTCCTACTTTGGATTGTAATGATCTTCTTGATTTATCATACTAAGAACATGAGCCG 417
Query 416 TGAGAGTCAACTCTTTGAGCCATTCGGTATACTCGGGTTGGAACCGGGTGCTACAGATTC 475
|||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||
Sbjct 418 TGAGAGTCAACTCTTTGAGCCATTCGGTATACTCGGTTTGGAACCTGGTGCTTCAGATTC 477
Query 476 AGAAATCAAGAAAGCATATAGAAGACTCTCTATTCAATACCATCCTGATAAAAATCCGGA 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 478 AGAAATCAAGAAAGCATATAGAAGACTCTCTATTCAATACCATCCTGATAAAAATCCTGA 537
Query 536 TCCAGAAGCCAATAAATATTTTGTGGAGTCCATAGCTAAAGCTTACCAAGCTTTGACTGA 595
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TCCAGAGGCCAATAAATATTTTGTGGAGTCCATAGCTAAAGCTTACCAAGCTTTGACTGA 597
Query 596 TCCGTTATCCCGTGAAAACTTTGAGAAGTACGGTCATCCGGATGGTAGGCAGGGTTATAC 655
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 598 TCCGTTATCCCGCGAAAACTTTGAGAAGTACGGTCATCCGGATGGTAGACAGGGTTATAC 657
Query 656 AATGGGAATTGCTCTTCCTCAATTTATCTTAAACATGAATGGAGACTCTGGTGGGGTGTT 715
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | ||
Sbjct 658 AATGGGAATTGCTCTTCCTCAATTTATTTTAAACATGAATGGAGAATCTGGTGGGATATT 717
Query 716 GTTGTTGTGTACAGTTGGTTTATGTATTCTCTTGCCACTCGTGATCGCTTCGATCTATCT 775
||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 718 ATTGTTGTGTACAGTTGGTTTATGTATTCTTTTGCCACTAGTGATCGCTTCAATCTATCT 777
Query 776 CTGGAGATCATCAAAGTATACTGGGAATCACGTTAAGCTTCAAACTCGTCAAGCATATTT 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CTGGAGATCATCAAAGTATACTGGGAATCACGTTAAGCTTCAAACTCGTCAAGCATATTT 837
Query 836 CGAGTTATTGCAACCCACTTTAACTCCAAGCAAAGTTATGGAAATTTTCATCAAAGCAGC 895
|||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 838 CGAGTTATTGCAACCCTCTTTAACTCCAAGCAAAGTTATGGATATTTTCATCAGAGCAGC 897
Query 896 TGAATATGCAGAGATTCCAGTTCGTAAAACCGATGATGAATCTCTGCAGAAACTCTATAC 955
|||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 898 TGAATACGCAGAGATTTCAGTTCGTAAATCCGATGATGAATCTCTGCAGAAACTCTTTA- 956
Query 956 T-TCTGTCAAGAA-CGAGCTAAATCTGGACCCTAAGAAGTTGAAGCAAGAGGAAGCTAAG 1013
| |||||||| || |||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 957 TGTCTGTCAA-AAGCGAGCTAAATTTGGATCCTAAGAAGTTGAAGCAAGAGGAAGCTAAG 1015
Query 1014 TTTTGGAAAAAGAATCCTGCAATTATCAAGACTGAGCTTTTGATACAGAAACAGTTAACT 1073
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1016 TTTTGGAAAAAGCATCCTGCAACTATCAAGACTGAGCTTTTGATACAGAAACAGTTAACT 1075
Query 1074 CGTGAATCATCAGTTCAGTCTCTGACTCTGCAACGTGATCTCAGGCGTGTGCTAGAGTTT 1133
|||||||||||||| | ||||| |||||||||||||||| |||||| |||||||||||||
Sbjct 1076 CGTGAATCATCAGTCCTGTCTCCGACTCTGCAACGTGATTTCAGGCATGTGCTAGAGTTT 1135
Query 1134 GCGCCTCGCCTCCTTGAAGATTTGATGAAGATGGCGGTTATACCCCGAAATGAACAAGGG 1193
|| |||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1136 GCACCTCGCCTGCTTGAAGATTTGATTAAGATGGCCGTTATACCCCGCAATGAACAAGGG 1195
Query 1194 CGTGGATGGTTACGTCCTGCACTTGGAGTAATAGAGCTATCTCAGTGCATTGTTCAGGCT 1253
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1196 CGTGGATGGTTACGTCCTGCACTTGGAGTAATGGAGCTATCTCAATGCATTGTTCAGGCT 1255
Query 1254 GTTCCTCTTAGTGCGAGGAAGTCATCTTCAGAAGACATTGCTCCTTTCTTGCAACTCCCT 1313
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 GTTCCTCTTAGTGCAAGGAAGTCATCTTCAGAAGACATTGCTCCTTTCTTGCAACTCCCT 1315
Query 1314 CATTTCAATGAGTCTATCGCTAAATCGATAGCGTTGCAGGTTAAATCATTCCAAAAGTTT 1373
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 CATTTCAATGAATCTATCGCTAAATCGATAGCGTTGCAGGTTAAATCATTCCAAAAGTTT 1375
Query 1374 CAAGAACTGAGCTTGGAAGAACGTTCTAAACTGCTCAGAGAGGTTGCGAGTCTATCAGAA 1433
|||||||||||||||| ||||||||||||||||||||||||||||| |||| | ||||||
Sbjct 1376 CAAGAACTGAGCTTGGCAGAACGTTCTAAACTGCTCAGAGAGGTTGTGAGTTTGTCAGAA 1435
Query 1434 ACCGATGTTCAAGACATCGAGAAAGTGTTAGAAATGATACCTTCTCTTAAAATCGACGTC 1493
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1436 ACCGATGTTCAAGACATCGAGAAAGTGTTAGAAATGATACCTTCTCTTAAAATCAACGTC 1495
Query 1494 ACTTGCAAAACAGAAGGCGAAGAAGGCATTCAAGAAGGCGATATTATGACAGTTCAATCT 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1496 ACTTGCAAAACAGAAGGCGAAGAAGGCATTCAAGAAGGCGATATTATGACAGTTCAAGCT 1555
Query 1554 TGGATCACTCTAAAACGTCCCAATGGACTCATAGGCGCTATTCCTCACTCACCATACTTT 1613
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1556 TGGATCACTCTGAAACGTCCCAATGGACTCATAGGCGCTATTCCTCACTCACCTTACTTT 1615
Query 1614 CCTTTCCACAAAGAGGAAAACTTTTGGGTTCTTCTTGCGGATTCAAACAATGTCTGGTTC 1673
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1616 CCTTTCCACAAAGAGGAAAACTTTTGGGTTCTTCTTGCGGATTCAAACCATGTCTGGTTC 1675
Query 1674 TTTCAGAAGGTTAGTTTCATGGATGAAGCAGGAGCTATAGCCGCTGCATCGAATGCTATT 1733
||||||||||||| |||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1676 TTTCAGAAGGTTAAATTCATGGATGAAGCTGGAGCTATAGCCGCTGCATCAAACACTATT 1735
Query 1734 ACTGAGACAATGGAACCTTTAGGAGCAAGCGTCAAGGAAACAAATGATGCAGTTAAAGAG 1793
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 ACTGAAACAATGGAACCTTTAGGAGCAAGCGTCAAGGAAACAAATGATGCAGTTAAAGAA 1795
Query 1794 GCTGTTGAGAAGGTTAAAAGTGGGTCGAGATTGGTAATGGGGAGACTCTTAGCACCTGGA 1853
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1796 GCTGTTGAGAAGGTTAAAAGTGGGTCAAGATTGGTAATGGGGAGACTCTTAGCACCTGGA 1855
Query 1854 GAAGGTACATATAACTTGACTTGCTTCTGCCTCAGCGATACTTGGATCGGTTGTGACCAA 1913
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1856 GAAGGTACTTATAACTTGACTTGCTTCTGCCTAAGCGATACTTGGATCGGTTGTGACCAA 1915
Query 1914 AAGACATCACTGAAAGTTAAGGTTTTGAAAAGAACCCGTGATTTGGAGGGTGAGAATGCA 1973
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1916 AAGACATCACTGAAAGTCGAGGTTTTGAAAAGAACCCGTGATGTGGAGGGTGAGAATGCA 1975
Query 1974 GAAGAAAGATTGGAGGACGACGAAGATGAGATTGAAGAGGAGGATTACGAAAGCGAATAC 2033
|||||| |||| ||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 1976 GAAGAAGGATTAGAGGAAGAGGATGATGAGATTGAAGAGGAGGATTACGAAAGCGAATAC 2035
Query 2034 AGCGAAGACGAGGAAGATAAGAAGAGAGGGTCGAAGAAGAAAGTAAACAAGAAGGAATCG 2093
|| || |||||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 2036 AGTGAGGACGAGGAAGATAAGAAGAGAGGGTCAAAGAAGAAAGTAAACAAG--G-AATCG 2092
Query 2094 AGTTCTGAAGAGTCGGGATCAGATGAAGAGTAAAAGAACAAAAAGTAGTCAAC-TT--T- 2149
|||||||||||||| |||||||||||||||||||||||||||||||||| ||| || |
Sbjct 2093 AGTTCTGAAGAGTCAGGATCAGATGAAGAGTAAAAGAACAAAAAGTAGTTAACGTTGATC 2152
Query 2150 -GA--T------CTGAAATTATACAATAATTTTTGTTTTCAAAGCTTACACAGTCGTACT 2200
|| | ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2153 TGAAATTATTGTCTGAAATTATACAATAATTTTTGTTTTCAGAGCTTACACAGTCGTACT 2212
Query 2201 CAAAGATTTTACAGTATTTAATCTTTT-GCTGAGTTTAATACTCTTTTTAGTTGACTCTT 2259
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2213 AAAAGATTTTACAGTATTTAATCTTTTTGCTGAGTTTAATACTCTTTTTAGTTGACTCTT 2272
Query 2260 TAAATCTATATCTTGTTTTGACTCTTAAGCTCAAATAGTTCAAAACTTTTCTGGTCATGT 2319
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2273 CAAATCTATACCTTGTTTTGACTCTTAAGCTCAGATAGTTCAAAACTTTTCTGGTCATGT 2332
Query 2320 TTT 2322
|||
Sbjct 2333 TTT 2335
> AT1G79940.1 | Symbols: ATERDJ2A | DnaJ / Sec63 Brl domains-containing
protein | chr1:30069550-30073332 FORWARD LENGTH=2313
Length=2313
Score = 1399 bits (757), Expect = 0.0
Identities = 1512/1868 (81%), Gaps = 86/1868 (5%)
Strand=Plus/Plus
Query 134 AAAGATGGCAGAATCAGAAGAGAATAGCGTTTTGTTTCCCATTTTTATTTTGACAATGAT 193
||||||||| | |||||||||||||||| ||||||||||||||||| ||||| || ||
Sbjct 151 AAAGATGGCGGCGTCAGAAGAGAATAGCGCATTGTTTCCCATTTTTATCTTGACGATTAT 210
Query 194 GGCAATTCCATTGGTGCCTTATA-CATTTGTGAAGCTAAGCCGCGCTTTTTCGAAGAAAC 252
||||||||| ||||||||||| | || | || ||| ||||| | ||| | || |||||||
Sbjct 211 GGCAATTCCTTTGGTGCCTTACACCA-TGGTCAAGTTAAGCGGTGCTCTCTCCAAGAAAC 269
Query 253 AACGGAGCATACATTGTCAATGTCTTGAATGTGATCGTTCAGGGAAGTACAAGAGATCCA 312
|| ||| ||| |||||||| ||||| || ||||| ||||| || || || |||||||||
Sbjct 270 AAAGGACCATTCATTGTCAGTGTCTCGAGTGTGACCGTTCTGGAAAATATAAGAGATCC- 328
Query 313 TT-TCTCAAAGA-ATCTCTAGCTTCACTTCATGTAGCAACTTGACAGTTGTGCTACTTTG 370
|| | | ||| | ||||||| |||| || | || |||||||||||| |||||||||| ||
Sbjct 329 TTGT-TTAAAAAGATCTCTAACTTCTCTACGTGGAGCAACTTGACACTTGTGCTACTCTG 387
Query 371 GATTGTAATGATCTTCTTGATCTATTACACTAAGAACATTAGCCGTGAGAG-TCAACTCT 429
| | || ||||| |||||||| ||||||||||||||||| ||||||||| | |||| | |
Sbjct 388 GGTCGTGATGATTTTCTTGATTTATTACACTAAGAACATGAGCCGTGAG-GCTCAAGTTT 446
Query 430 TTGAGCCATTCGGTATACTCGGGTTGGAACCGGGTGCTACAGATTCAGAAATCAAGAAAG 489
|||| |||||| ||||||| || ||||||| || | ||||||||||||||| |||||||
Sbjct 447 TTGACCCATTCAGTATACTTGGACTGGAACCTGGAGTTACAGATTCAGAAATAAAGAAAG 506
Query 490 CATATAGAAGACTCTCTATTCAATACCATCCTGATAAAAATCCGGATCCAGAAGCCAATA 549
|||||||||| || || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 507 CATATAGAAGGCTGTCGATTCAATACCATCCTGATAAAAATCCAGATCCAGAAGCCAATA 566
Query 550 AATATTTTGTGGAGTCCATAGCTAAAGCTTACCAAGCTTTGACTGA-TCCGTTATCCCGT 608
||||||||||||||| |||| ||||||| ||||| ||||||||||| || | ||||||||
Sbjct 567 AATATTTTGTGGAGTTCATATCTAAAGCATACCAGGCTTTGACTGATTCAG-TATCCCGT 625
Query 609 GAAAACTTTGAGAAGTACGGTCATCCGGATGGTAGGCAGGG-TTATAC-AATGGGAATTG 666
||||||||||||||||| |||||||| ||||| || ||||| || | | |||||| ||||
Sbjct 626 GAAAACTTTGAGAAGTATGGTCATCCAGATGGCAGACAGGGATT-T-CAAATGGGCATTG 683
Query 667 CTCTTCCTCAATTT-ATCTTAAACA-TGAATGGAGAC-TCTGGTGGGGTGTTGTTG-TTG 722
|||||||||||||| || || ||| || |||||| | |||||||| | || ||| ||
Sbjct 684 CTCTTCCTCAATTTCTTC-TAGACATTG-ATGGAG-CATCTGGTGGCATATTATTGCTT- 739
Query 723 TGTACAGTTGGTTTATGTATTCTCTTGCCACTCGTGATCGCT-TCGATCTATCTCTGGAG 781
|| | ||||||| | |||||||||||||| || ||||| ||| | || ||||||| |||
Sbjct 740 TGGATAGTTGGTGTCTGTATTCTCTTGCCCCTTGTGATTGCTGT-TATATATCTCTCGAG 798
Query 782 ATCATCAAAGTATACTGGGAATC-ACGTTAAGCTTC-AA-ACTCGTCAAGCATATT-TCG 837
|||||||||||||||||||| | |||||| || || || |||| || ||||||| |
Sbjct 799 GTCATCAAAGTATACTGGGAA-CTACGTTATGCATCAAACACTC-TC-CGCATATTAT-T 854
Query 838 AGT-TATTGCAACCCACTTTAACTCCAAGCAAAGTTATGGAAATTTTCATCAAAGCAGCT 896
| | || || ||||| || | | |||||||||||||||||| |||||| ||| ||||||
Sbjct 855 A-TCTAATGAAACCCTCTCTGGCCCCAAGCAAAGTTATGGAAGTTTTCACCAAGGCAGCT 913
Query 897 GA--ATATGCAGAGATTCCAGTTCGTAAAACCGATGATGAATCTCTGCAGAAACTCTATA 954
|| | ||| |||||||||||||||| ||| ||||||||| |||||||||| |||| ||
Sbjct 914 GAGTACATG--GAGATTCCAGTTCGTAGAACTGATGATGAACCTCTGCAGAAGCTCTTTA 971
Query 955 CT-TCTGTCAAGAACGAGCTAAATCTGGACCCT-AAGAAGTTGAAGCAAGAGGAAGCTAA 1012
| ||||| | || || |||||| |||| ||| ||||| ||||||||||| |||||||
Sbjct 972 -TGTCTGTTAGGAGTGAACTAAATTTGGA-CCTGAAGAACATGAAGCAAGAGCAAGCTAA 1029
Query 1013 GTTTTGGAAAAAGAATCCTGCAATTA-TCAAGACTGAGCTTTTGATAC-AGAAACAGTTA 1070
|||||||||| || ||||||| | || | ||||| ||||| ||||||| || ||||||
Sbjct 1030 GTTTTGGAAACAGCATCCTGCCA-TAGTGAAGACCGAGCTGTTGATACAAG-CCCAGTTA 1087
Query 1071 ACTCGTGAATCATCAGTTCAGTCT-CTGACTCTGCAACGTGATCTCAGGCGTGTGCTAGA 1129
|||||||||||| ||| | |||| | | | || || ||||| ||||||||||||||||
Sbjct 1088 ACTCGTGAATCAGGAGTCCTGTCTCCAG-CCCTTCAGGGTGATTTCAGGCGTGTGCTAGA 1146
Query 1130 GTTTGCGCCTCGCCTCCTTGAAGATTTGA-TGAAGATGGCGGTTATACCCCGAAATGAAC 1188
| |||| |||||||||||||| || || | ||||||||||||||||||| || | || |
Sbjct 1147 GCTTGCACCTCGCCTCCTTGAGGAGTT-ATTGAAGATGGCGGTTATACCACGCACTGCCC 1205
Query 1189 AAGGGCGTGGATGG-TTACGTCCTGCACTTGGAGTAATAGAGCTATCTCAGTGCATTGTT 1247
|||||| ||||||| | | | |||||| |||||||| | |||||||||||||||||||||
Sbjct 1206 AAGGGCATGGATGGCTGA-GGCCTGCAGTTGGAGTAGTTGAGCTATCTCAGTGCATTGTT 1264
Query 1248 CAGGCTGTTCCTCTTAGTGCGAGGAAGTCATCT----T--CA---GAAGACATTGCTCCT 1298
|||||||||||||||||||| |||||||| ||| | || |||| |||| | |||
Sbjct 1265 CAGGCTGTTCCTCTTAGTGCAAGGAAGTCTTCTGGAGTATCATCAGAAGGCATTTCCCCT 1324
Query 1299 TTCTTGCAACTCCCTCATTTCAATGA-GTC-TATCG-CTAAATCGATAGC--GTT-GCAG 1352
||||| || ||||||||||||| ||| | | | | | | ||| |||||| | | ||
Sbjct 1325 TTCTTACAGCTCCCTCATTTCAGTGATGCCGT-T-GTCAAAAA-GATAGCACGGAAGAAG 1381
Query 1353 GTTAAATCATTCCAAAAGT-TTCAAGAACTGAGCTTGGAAGAACGTTCTAAACTGCTCAG 1411
||||||||||||||| | | |||||||| |||| |||||||| |||||| |||| || |
Sbjct 1382 GTTAAATCATTCCAAGA-TCTTCAAGAAATGAGGTTGGAAGACCGTTCTGAACTACTTAC 1440
Query 1412 AGAGGTTGCGAGTCTATCAGAAACCGATGTTCAAGACATCGAGAAAGTGTTAGAAATGAT 1471
|||| ||| || |||||| ||| |||||| | ||||| ||||| ||| ||||||||||
Sbjct 1441 TCAGGTAGCGGGTTTATCAGCAACTGATGTTGAGGACATTGAGAAGGTGCTAGAAATGAT 1500
Query 1472 ACCTTCTCTTAAAATCGACGTCACTTGCAAAACAGAAGGCGAAGAAGGCATTCAAGAAGG 1531
|| ||| ||| | ||||| |||| || |||||||||| ||||| || || ||||| ||
Sbjct 1501 GCCGTCTATTACAGTCGACATCACATGTGAAACAGAAGGGGAAGAGGGGATCCAAGAGGG 1560
Query 1532 CGATATTATGACAGTTCAATCTTGGATCACTCTAAAACGTCCCAATGGACTCATAGGCGC 1591
|| ||| |||| ||||| ||||| |||| || ||||| |||||||| || |||||||
Sbjct 1561 AGACATTGTGACCCTTCAAGCTTGGGTCACCCTGAAACGACCCAATGGGCTTGTAGGCGC 1620
Query 1592 TATTCCTCACT-CACCATACTTTCCTTTCCACAAAGAGGAAAACTTTTGGGTTCTTCTTG 1650
| ||||||| | |||| ||||| || |||||||| |||||||||| |||||||||||| |
Sbjct 1621 TCTTCCTCA-TGCACCCTACTTCCCCTTCCACAAGGAGGAAAACTATTGGGTTCTTCTGG 1679
Query 1651 CGGATTCA------AACAATGTCTGGTTCTTTCAGAAGGTTAGTTTCATGGATGAAGCAG 1704
| |||||| ||||| || ||||||| |||||||||||| ||| ||||||||| |
Sbjct 1680 CTGATTCAGTGTCGAACAACGTTTGGTTCTCTCAGAAGGTTAGCTTCCTGGATGAAGGTG 1739
Query 1705 GAGCTATAGCCGCTGCATCGAATGCTATTACTGAGACAATGGAACCTTTAGGAGCAAGCG 1764
|||| ||| | |||||||| || || || | |||| |||||||| || || ||| | |
Sbjct 1740 GAGCGATAACGGCTGCATCAAAAGCCATCAGTGAGTCAATGGAAGGTTCGGGTGCAGGGG 1799
Query 1765 TCAAGGAAACAAATGATGCAGTTAAAGAGGCTG-TTGAGAAGGTTAAAAGTGGGTCGAGA 1823
| ||||||||||| |||||||| | ||| || | |||||||||||||| | ||||| ||
Sbjct 1800 TGAAGGAAACAAACGATGCAGTGAGAGAAGC-GATTGAGAAGGTTAAAGGAGGGTCAAGG 1858
Query 1824 TTGGTAATGGGGAGACTCTTAGCACCTGG-AGAAGGTACATATAACTTGACTTGCTTCTG 1882
|||| ||||| | |||| |||||| || ||| || ||||| |||||||||||||||||
Sbjct 1859 CTGGTCATGGGTAAACTCCAAGCACC-GGCAGAGGGAACATACAACTTGACTTGCTTCTG 1917
Query 1883 CCTCAGCGATACTTGGATCGGTTGTGACCAAAAGACAT-CACTGAAAGTTAAGGTTTTGA 1941
||| | || || |||||||| |||||| ||||| || |||||||||| || || |||
Sbjct 1918 CCTGTGTGACACATGGATCGGGTGTGACAAAAAG-CAAGCACTGAAAGTGAAAGTCCTGA 1976
Query 1942 AAAGAACC 1949
||||||||
Sbjct 1977 AAAGAACC 1984
> AT4G21190.1 | Symbols: emb1417 | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:11292192-11294009 REVERSE LENGTH=1308
Length=1308
Score = 285 bits (154), Expect = 1e-75
Identities = 169/176 (96%), Gaps = 2/176 (1%)
Strand=Plus/Minus
Query 2148 TTGATCTGAAATTATACAATAATTTTTGTTTTCAAAGCTTACACAGTCGTACTCAAAGAT 2207
||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1285 TTG-TCTGAAATTATACAATAATTTTTGTTTTCAGAGCTTACACAGTCGTACTAAAAGAT 1227
Query 2208 TTTACAGTATTTAATC-TTTTGCTGAGTTTAATACTCTTTTTAGTTGACTCTTTAAATCT 2266
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1226 TTTACAGTATTTAATCTTTTTGCTGAGTTTAATACTCTTTTTAGTTGACTCTTCAAATCT 1167
Query 2267 ATATCTTGTTTTGACTCTTAAGCTCAAATAGTTCAAAACTTTTCTGGTCATGTTTT 2322
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1166 ATACCTTGTTTTGACTCTTAAGCTCAGATAGTTCAAAACTTTTCTGGTCATGTTTT 1111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115260451320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5