BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492770
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21160.1 | Symbols: ZAC, AGD12 | Calcium-dependent ARF-type ... 1829 0.0
AT4G05330.1 | Symbols: AGD13 | ARF-GAP domain 13 | chr4:2720561... 1024 0.0
AT2G14490.1 | Symbols: | pseudogene, ARF GTPase-activating dom... 117 3e-25
> AT4G21160.1 | Symbols: ZAC, AGD12 | Calcium-dependent ARF-type
GTPase activating protein family | chr4:11284147-11286767
FORWARD LENGTH=1377
Length=1377
Score = 1829 bits (990), Expect = 0.0
Identities = 1159/1236 (94%), Gaps = 30/1236 (2%)
Strand=Plus/Plus
Query 1 GTTCATCTTGAATTTGTGTCTCTCCAAGAACATAtctctctctctctctcctcct--cCT 58
|||||||||||||||||| || |||||||||||||||||||||||||| ||||| |||
Sbjct 32 GTTCATCTTGAATTTGTG--TC-CCAAGAACATATCTCTCTCTCTCTCT-CTCCTCACCT 87
Query 59 TGGTAGAT-TCTGTTTGATGATTGTTAGCTT-TTTAGAAGAGCAATGAGTTA-T-T---- 110
||| | | ||||||||||||||| ||| || |||||||||||||||||||| | |
Sbjct 88 TGG-A-TTCTCTGTTTGATGATTGCTAG-TTCTTTAGAAGAGCAATGAGTTATTCTGGAG 144
Query 111 -----CT----AAGTCTGGCTCAGGTAAAAGGAGAATAAGGGATCTTTTAACTCAATCTG 161
|| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 CCGGACTCGGAAAGCCTGGCTCAGGTAAAAGGAGAATAAGGGATCTTTTAACTCAATCTG 204
Query 162 ATAACCGAGTCTGCGCTGATTGTGGCGCTCCAGATCCTAAGTGGGCGTCAGCTAATATCG 221
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 205 ATAACCGAGTCTGCGCTGATTGTGGCGCTCCAGATCCTAAGTGGGCGTCAGCTAATATTG 264
Query 222 GAGTGTTTATATGCTTAAAATGTTGCGGTGTGCACAGAAGCCTTGGCACTCATATCTCAA 281
||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||
Sbjct 265 GAGTGTTTATATGCTTAAAATGTTGTGGTGTCCACAGAAGCCTTGGCAGTCATATCTCAA 324
Query 282 AGGTCTTATCTGTGACACTGGATGAATGGTCAGATGAAGAAGTCGATTCTATGATTGAAA 341
|||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 325 AGGTCTTATCCGTGACATTGGATGAATGGTCAGATGAAGAAGTCGATTCGATGATTGAAA 384
Query 342 TTGGAGGAAATGCCTCTGCGAATTCAATTTACGAGGCGTTTATACCCGAAGGAAGCTCTA 401
||||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||
Sbjct 385 TTGGAGGAAATGCCTCTGCAAATTCAATTTACGAGGCGTTTATTCCTGAAGGTAGCTCTA 444
Query 402 AGCCTGGACCTGATGCTAGTCATGACCAGCGTATGAGGTTCATTAGGTCTAAATATGAGC 461
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 445 AGCCTGGACCTGATGCTAGTCATGACCAGCGTATGAGGTTCATTAGGTCGAAATATGAGC 504
Query 462 ACCAAGAGTTTCTGAAACCAAGCTTGCGAATCACATCTGTGAGGGGCTCGAGTACAAAGA 521
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 505 ACCAAGAGTTTCTGAAACCAAGCTTGCGGATCACATCCGTGAGGGGCTCTAGTACAAAGA 564
Query 522 GTACACCATATCTTTCATCAAGTATATCTAAAAAGATTATTGATAGCTTTCGCACTAATT 581
| || ||| ||||||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 565 CTCCAGCATTTCTTTCATCGAGTCTATCTAAAAAGATTGTTGATAGCTTTCGCACTAATT 624
Query 582 CATCATCGCAACAGCCGCAACTTGAAGGCATGGTTGAGTTTATTGGATTGTTGAAGGTTA 641
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 625 CATCATCGCAACAGCCGCAACTTGAAGGCATGGTTGAGTTTATTGGATTGTTGAAGGTGA 684
Query 642 CTATCAAAAAGGGTAACAATTTAGCCGTCCGAGATATGATGTCAAGTGATCCCTATGTTG 701
|||| |||||||||| |||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 685 CTATTAAAAAGGGTACCAATATGGCCATCCGAGATATGATGTCAAGTGATCCCTATGTTG 744
Query 702 TGTTGACTCTAGGACAACAGAAGGCTCAATCTACTGTAGTGAAGAGCAACTTGAACCCGG 761
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 745 TGTTGACTCTAGGACAACAGAAGGCTCAATCTACTGTAGTGAAGAGCAACTTAAACCCTG 804
Query 762 TCTGGAACGAGGAACTCATGCTCTCTGTTCCTCATAACTATGGCTCAGTGAAATTGCAAG 821
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 TCTGGAATGAGGAACTCATGCTCTCTGTTCCTCATAACTATGGCTCAGTGAAATTGCAAG 864
Query 822 TGTTTGATTATGACACATTTTCTGCTGATGACATAATGGGAGAAGCTGAGATTGATATCC 881
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 TGTTTGACTATGACACATTTTCTGCTGATGACATAATGGGAGAAGCTGAGATTGATATCC 924
Query 882 AACCTCTGATTACATCTGCAATGGCTTTTGGAGACCCTGAAATGTTTGGAGATATGCAGA 941
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 AGCCTCTGATTACATCTGCAATGGCTTTTGGAGACCCTGAAATGTTTGGAGATATGCAGA 984
Query 942 TTGGAAAATGGCTGAAATCGCACGACAATGCTCTTATAGAAGATAGCATCATCAACATTG 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 TTGGAAAATGGCTGAAATCGCACGACAATGCTCTTATAGAAGATAGCATCATCAACATTG 1044
Query 1002 CAGATGGTAAAGTGAAACAAGAGGTTCAGATCAAGCTTCAGAATGTTGAATCTGGTGAAC 1061
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1045 CAGATGGTAAAGTGAAGCAAGAGGTTCAAATCAAGCTTCAGAATGTTGAATCTGGTGAAC 1104
Query 1062 TAGAACTAGAAATGGAGTGGCTGCCTCTTGACCAATAAATAATCAACTATATAATAGGGT 1121
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1105 TAGAACTAGAAATGGAGTGGCTACCTCTTGAGCAATAAATAATCAACTATATAATAGGGT 1164
Query 1122 CATTATATATATC-AATCAAATCTTATTATTGTATTCATTCATTATAACATTTCCCCCCT 1180
||||||||||| | || ||||| |||||| |||||||||| ||| ||||||| ||||| |
Sbjct 1165 CATTATATATAACCAAACAAATTTTATTACTGTATTCATT-ATTTTAACATT-CCCCC-T 1221
Query 1181 TTGTTCTTGTTTGACAAATTTTTGAAACTTCGATCT 1216
| |||||||||||||||||||||||||||| |||||
Sbjct 1222 TGGTTCTTGTTTGACAAATTTTTGAAACTTTGATCT 1257
> AT4G05330.1 | Symbols: AGD13 | ARF-GAP domain 13 | chr4:2720561-2723125
REVERSE LENGTH=1322
Length=1322
Score = 1024 bits (554), Expect = 0.0
Identities = 853/997 (86%), Gaps = 21/997 (2%)
Strand=Plus/Plus
Query 112 TAAGTCTGGCTCAGGTAAAAGGAGAATAAGGGATCTTTTAACTCAATCTGATAACCGAGT 171
|||| |||||||||||||||||||||| || |||||||||| |||| |||||||||||||
Sbjct 127 TAAGCCTGGCTCAGGTAAAAGGAGAATCAGAGATCTTTTAAATCAACCTGATAACCGAGT 186
Query 172 CTGCGCTGATTGTGGCGCTCCAGATCCTAAGTGGGCGTCAGCTAATATCGGAGTGTTTAT 231
||||||||||||||||||| | |||||||| ||||| ||||| ||||||||||| || ||
Sbjct 187 CTGCGCTGATTGTGGCGCTTCTGATCCTAAATGGGCATCAGCAAATATCGGAGTATTCAT 246
Query 232 ATGCTTAAAATGTTGCGGTGTGCACAGAAGCCTTGGCACTCATATCTCAAAGGTCTTATC 291
|||||||||||||||||||||||||| ||||| ||||||||||| |||||||| || ||
Sbjct 247 TTGCTTAAAATGTTGCGGTGTGCACAGGAGCCTCGGCACTCATATTTCAAAGGTTTTGTC 306
Query 292 TGTGACACTGGATGAATGGTCAGATGAAGAAGTCGATTCTATGATTGAAATTGGAGGAAA 351
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 307 TGTGACACTAGATGAATGGTCAGATGAGGAAGTCGATTCCATGATTGAAATTGGAGGAAA 366
Query 352 TGCCTCTGCGAATTCAATTTACGAGGCGTTTATACCCGA-AGGAAGCTCTAAGCCTGGAC 410
||| ||||| ||||||||||| || || ||| |||| || | | |||||||||||||||
Sbjct 367 TGCGTCTGCTAATTCAATTTATGAAGCTTTTTTACCTGACACGT-GCTCTAAGCCTGGAC 425
Query 411 CTGATGCTAGTCATGACCAGCGTATGAGGTTCATTAGGTCTAAATATGAGCACCAAGAGT 470
|||||| || |||||||||||||||||| ||||||||| | |||||||| | |||||||
Sbjct 426 CTGATGTTAATCATGACCAGCGTATGAGATTCATTAGGGCAAAATATGAACTGCAAGAGT 485
Query 471 TTCTGAAACCAAGCTTGCGAATCACATCTGTGAGGGGCTCGAGTACAAAGAGTACACCAT 530
||||||||||||||||||| || ||||| | || ||||| | ||||||||| || | |
Sbjct 486 TTCTGAAACCAAGCTTGCGGATTACATCCGGGAAAGGCTC-A--ACAAAGAGTTCAGCTT 542
Query 531 ATCTTTCATCAAGTATATCTAAAAAGATTATTGATAGCTTTCGCACTAATTCATCATCGC 590
|||| |||||||| | |||| |||||| || ||||| |||||||| |||||||||||||
Sbjct 543 TTCTTACATCAAGTCTTTCTAGAAAGATCATGGATAGTTTTCGCACAAATTCATCATCGC 602
Query 591 A-ACAGCCGCAACTTGAAGGCATGGTTGAGTTTATTGGATTGTTGAAGGTTACTATCAAA 649
| || | | | ||||| ||||| ||||||||||||||||||||||| ||||| ||
Sbjct 603 AGAC-GATGTTTCAGGAAGGAATGGTAGAGTTTATTGGATTGTTGAAGGTGACTATTAAG 661
Query 650 AAGGGTAAC-AATTTAGCCGTCCGAGATATGATGTCAAGTGATCCCTATGTTGTGTTGAC 708
||||| ||| || ||||| || |||| ||||||||||||||||| |||||||||||||
Sbjct 662 AAGGG-AACTAACTTAGCAATCAGAGACATGATGTCAAGTGATCCATATGTTGTGTTGAA 720
Query 709 TCTAGGACAA-CAGAAGGCT-CA-ATCTACTGT-AGTGAAGAGCAACTTGAACCCGGTCT 764
|||||| || || || || || | | ||||| | |||| || || ||||||||||| |
Sbjct 721 TCTAGGG-AAGCAAAAA-CTTCAGA-CAACTGTTA-TGAATAGTAATTTGAACCCGGTAT 776
Query 765 GGAA-CGAGGAACTCATGCTCTCTGTTCCTCATAACTATGGCTCAGTGAAATTGCAAGTG 823
|||| | || |||||||||| ||||||||| | | ||||||| | |||||||||||||||
Sbjct 777 GGAATCAAG-AACTCATGCTGTCTGTTCCTGAGAGCTATGGCCCTGTGAAATTGCAAGTG 835
Query 824 TTTGATTATGACACATTTTCTGCTGATGACATAATGGGAGAAGCTGAGATTGATATCCAA 883
| ||||||||| |||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 836 TATGATTATGATACATTTTCTGCTGATGACATAATGGGAGAAGCAGATATTGATATACAA 895
Query 884 CCTCTGATTACATCTGCAATGGCTTTTGGAGACCCTGAAATGTTTGGAGATATGCAGATT 943
||| |||| |||||||||||||||||||| || || ||||||||||| ||||||||||||
Sbjct 896 CCTTTGATAACATCTGCAATGGCTTTTGGGGATCCAGAAATGTTTGGGGATATGCAGATT 955
Query 944 GGAAAATGGCTGAAATCGCACGACAATGCTCTTA-TAGAAGATAGCATCATCAACATTGC 1002
|| |||||||| |||||||| || || | ||| |||| || || ||||| |||||||
Sbjct 956 GGGAAATGGCTAAAATCGCATGATAACCCA-TTAATAGATGACAGTATCATTAACATTGT 1014
Query 1003 AGATGGTAAAGTGAAACAAGAGGTTCAGATCAAGCTTCAGAATGTTGAATCTGGTGAACT 1062
||||| ||||||||||| |||||||||||||||||||||||||| || ||||| ||| |
Sbjct 1015 TGATGGGAAAGTGAAACAGGAGGTTCAGATCAAGCTTCAGAATGTAGAGTCTGGAGAATT 1074
Query 1063 AGAACTAGAAATGGAGTGGCTGCCTCTTGACCAATAA 1099
||| ||||||||||| |||||||| ||||||||||||
Sbjct 1075 AGAGCTAGAAATGGAATGGCTGCCACTTGACCAATAA 1111
> AT2G14490.1 | Symbols: | pseudogene, ARF GTPase-activating domain-containing
protein, similar to zinc finger and C2 domain
protein GI:9957238 from (Arabidopsis thaliana); blastp match
of 53% identity and 4.3e-27 P-value to GP|19386828|dbj|BAB86206.1||AP003735
putative zinc finger and C2 domain protein
{Oryza sativa (japonica cultivar-group)} | chr2:6164999-6165986
REVERSE LENGTH=988
Length=988
Score = 117 bits (63), Expect = 3e-25
Identities = 79/87 (91%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 123 CAGGTAAAAGGAGAATAAGGGATCTTTTAACTCAATCTGATAACCGAGTCTGCGCTGATT 182
|||||||||||||||| || |||||||||| |||| ||||||||||||||||||||||||
Sbjct 173 CAGGTAAAAGGAGAATCAGAGATCTTTTAAATCAACCTGATAACCGAGTCTGCGCTGATT 232
Query 183 GTGGCGCTCCAGATCCTAAGTGGGCGT 209
|||||||| | | |||||| |||||||
Sbjct 233 GTGGCGCTTCTGTTCCTAAATGGGCGT 259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59738648550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5