BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492770 Length=1216 Score E Sequences producing significant alignments: (Bits) Value AT4G21160.1 | Symbols: ZAC, AGD12 | Calcium-dependent ARF-type ... 1829 0.0 AT4G05330.1 | Symbols: AGD13 | ARF-GAP domain 13 | chr4:2720561... 1024 0.0 AT2G14490.1 | Symbols: | pseudogene, ARF GTPase-activating dom... 117 3e-25 > AT4G21160.1 | Symbols: ZAC, AGD12 | Calcium-dependent ARF-type GTPase activating protein family | chr4:11284147-11286767 FORWARD LENGTH=1377 Length=1377 Score = 1829 bits (990), Expect = 0.0 Identities = 1159/1236 (94%), Gaps = 30/1236 (2%) Strand=Plus/Plus Query 1 GTTCATCTTGAATTTGTGTCTCTCCAAGAACATAtctctctctctctctcctcct--cCT 58 |||||||||||||||||| || |||||||||||||||||||||||||| ||||| ||| Sbjct 32 GTTCATCTTGAATTTGTG--TC-CCAAGAACATATCTCTCTCTCTCTCT-CTCCTCACCT 87 Query 59 TGGTAGAT-TCTGTTTGATGATTGTTAGCTT-TTTAGAAGAGCAATGAGTTA-T-T---- 110 ||| | | ||||||||||||||| ||| || |||||||||||||||||||| | | Sbjct 88 TGG-A-TTCTCTGTTTGATGATTGCTAG-TTCTTTAGAAGAGCAATGAGTTATTCTGGAG 144 Query 111 -----CT----AAGTCTGGCTCAGGTAAAAGGAGAATAAGGGATCTTTTAACTCAATCTG 161 || ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 145 CCGGACTCGGAAAGCCTGGCTCAGGTAAAAGGAGAATAAGGGATCTTTTAACTCAATCTG 204 Query 162 ATAACCGAGTCTGCGCTGATTGTGGCGCTCCAGATCCTAAGTGGGCGTCAGCTAATATCG 221 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 205 ATAACCGAGTCTGCGCTGATTGTGGCGCTCCAGATCCTAAGTGGGCGTCAGCTAATATTG 264 Query 222 GAGTGTTTATATGCTTAAAATGTTGCGGTGTGCACAGAAGCCTTGGCACTCATATCTCAA 281 ||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||| Sbjct 265 GAGTGTTTATATGCTTAAAATGTTGTGGTGTCCACAGAAGCCTTGGCAGTCATATCTCAA 324 Query 282 AGGTCTTATCTGTGACACTGGATGAATGGTCAGATGAAGAAGTCGATTCTATGATTGAAA 341 |||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 325 AGGTCTTATCCGTGACATTGGATGAATGGTCAGATGAAGAAGTCGATTCGATGATTGAAA 384 Query 342 TTGGAGGAAATGCCTCTGCGAATTCAATTTACGAGGCGTTTATACCCGAAGGAAGCTCTA 401 ||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||||| Sbjct 385 TTGGAGGAAATGCCTCTGCAAATTCAATTTACGAGGCGTTTATTCCTGAAGGTAGCTCTA 444 Query 402 AGCCTGGACCTGATGCTAGTCATGACCAGCGTATGAGGTTCATTAGGTCTAAATATGAGC 461 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 445 AGCCTGGACCTGATGCTAGTCATGACCAGCGTATGAGGTTCATTAGGTCGAAATATGAGC 504 Query 462 ACCAAGAGTTTCTGAAACCAAGCTTGCGAATCACATCTGTGAGGGGCTCGAGTACAAAGA 521 |||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| Sbjct 505 ACCAAGAGTTTCTGAAACCAAGCTTGCGGATCACATCCGTGAGGGGCTCTAGTACAAAGA 564 Query 522 GTACACCATATCTTTCATCAAGTATATCTAAAAAGATTATTGATAGCTTTCGCACTAATT 581 | || ||| ||||||||| ||| |||||||||||||| ||||||||||||||||||||| Sbjct 565 CTCCAGCATTTCTTTCATCGAGTCTATCTAAAAAGATTGTTGATAGCTTTCGCACTAATT 624 Query 582 CATCATCGCAACAGCCGCAACTTGAAGGCATGGTTGAGTTTATTGGATTGTTGAAGGTTA 641 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 625 CATCATCGCAACAGCCGCAACTTGAAGGCATGGTTGAGTTTATTGGATTGTTGAAGGTGA 684 Query 642 CTATCAAAAAGGGTAACAATTTAGCCGTCCGAGATATGATGTCAAGTGATCCCTATGTTG 701 |||| |||||||||| |||| | ||| ||||||||||||||||||||||||||||||||| Sbjct 685 CTATTAAAAAGGGTACCAATATGGCCATCCGAGATATGATGTCAAGTGATCCCTATGTTG 744 Query 702 TGTTGACTCTAGGACAACAGAAGGCTCAATCTACTGTAGTGAAGAGCAACTTGAACCCGG 761 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 745 TGTTGACTCTAGGACAACAGAAGGCTCAATCTACTGTAGTGAAGAGCAACTTAAACCCTG 804 Query 762 TCTGGAACGAGGAACTCATGCTCTCTGTTCCTCATAACTATGGCTCAGTGAAATTGCAAG 821 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 805 TCTGGAATGAGGAACTCATGCTCTCTGTTCCTCATAACTATGGCTCAGTGAAATTGCAAG 864 Query 822 TGTTTGATTATGACACATTTTCTGCTGATGACATAATGGGAGAAGCTGAGATTGATATCC 881 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 865 TGTTTGACTATGACACATTTTCTGCTGATGACATAATGGGAGAAGCTGAGATTGATATCC 924 Query 882 AACCTCTGATTACATCTGCAATGGCTTTTGGAGACCCTGAAATGTTTGGAGATATGCAGA 941 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 925 AGCCTCTGATTACATCTGCAATGGCTTTTGGAGACCCTGAAATGTTTGGAGATATGCAGA 984 Query 942 TTGGAAAATGGCTGAAATCGCACGACAATGCTCTTATAGAAGATAGCATCATCAACATTG 1001 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 985 TTGGAAAATGGCTGAAATCGCACGACAATGCTCTTATAGAAGATAGCATCATCAACATTG 1044 Query 1002 CAGATGGTAAAGTGAAACAAGAGGTTCAGATCAAGCTTCAGAATGTTGAATCTGGTGAAC 1061 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1045 CAGATGGTAAAGTGAAGCAAGAGGTTCAAATCAAGCTTCAGAATGTTGAATCTGGTGAAC 1104 Query 1062 TAGAACTAGAAATGGAGTGGCTGCCTCTTGACCAATAAATAATCAACTATATAATAGGGT 1121 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 1105 TAGAACTAGAAATGGAGTGGCTACCTCTTGAGCAATAAATAATCAACTATATAATAGGGT 1164 Query 1122 CATTATATATATC-AATCAAATCTTATTATTGTATTCATTCATTATAACATTTCCCCCCT 1180 ||||||||||| | || ||||| |||||| |||||||||| ||| ||||||| ||||| | Sbjct 1165 CATTATATATAACCAAACAAATTTTATTACTGTATTCATT-ATTTTAACATT-CCCCC-T 1221 Query 1181 TTGTTCTTGTTTGACAAATTTTTGAAACTTCGATCT 1216 | |||||||||||||||||||||||||||| ||||| Sbjct 1222 TGGTTCTTGTTTGACAAATTTTTGAAACTTTGATCT 1257 > AT4G05330.1 | Symbols: AGD13 | ARF-GAP domain 13 | chr4:2720561-2723125 REVERSE LENGTH=1322 Length=1322 Score = 1024 bits (554), Expect = 0.0 Identities = 853/997 (86%), Gaps = 21/997 (2%) Strand=Plus/Plus Query 112 TAAGTCTGGCTCAGGTAAAAGGAGAATAAGGGATCTTTTAACTCAATCTGATAACCGAGT 171 |||| |||||||||||||||||||||| || |||||||||| |||| ||||||||||||| Sbjct 127 TAAGCCTGGCTCAGGTAAAAGGAGAATCAGAGATCTTTTAAATCAACCTGATAACCGAGT 186 Query 172 CTGCGCTGATTGTGGCGCTCCAGATCCTAAGTGGGCGTCAGCTAATATCGGAGTGTTTAT 231 ||||||||||||||||||| | |||||||| ||||| ||||| ||||||||||| || || Sbjct 187 CTGCGCTGATTGTGGCGCTTCTGATCCTAAATGGGCATCAGCAAATATCGGAGTATTCAT 246 Query 232 ATGCTTAAAATGTTGCGGTGTGCACAGAAGCCTTGGCACTCATATCTCAAAGGTCTTATC 291 |||||||||||||||||||||||||| ||||| ||||||||||| |||||||| || || Sbjct 247 TTGCTTAAAATGTTGCGGTGTGCACAGGAGCCTCGGCACTCATATTTCAAAGGTTTTGTC 306 Query 292 TGTGACACTGGATGAATGGTCAGATGAAGAAGTCGATTCTATGATTGAAATTGGAGGAAA 351 ||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 307 TGTGACACTAGATGAATGGTCAGATGAGGAAGTCGATTCCATGATTGAAATTGGAGGAAA 366 Query 352 TGCCTCTGCGAATTCAATTTACGAGGCGTTTATACCCGA-AGGAAGCTCTAAGCCTGGAC 410 ||| ||||| ||||||||||| || || ||| |||| || | | ||||||||||||||| Sbjct 367 TGCGTCTGCTAATTCAATTTATGAAGCTTTTTTACCTGACACGT-GCTCTAAGCCTGGAC 425 Query 411 CTGATGCTAGTCATGACCAGCGTATGAGGTTCATTAGGTCTAAATATGAGCACCAAGAGT 470 |||||| || |||||||||||||||||| ||||||||| | |||||||| | ||||||| Sbjct 426 CTGATGTTAATCATGACCAGCGTATGAGATTCATTAGGGCAAAATATGAACTGCAAGAGT 485 Query 471 TTCTGAAACCAAGCTTGCGAATCACATCTGTGAGGGGCTCGAGTACAAAGAGTACACCAT 530 ||||||||||||||||||| || ||||| | || ||||| | ||||||||| || | | Sbjct 486 TTCTGAAACCAAGCTTGCGGATTACATCCGGGAAAGGCTC-A--ACAAAGAGTTCAGCTT 542 Query 531 ATCTTTCATCAAGTATATCTAAAAAGATTATTGATAGCTTTCGCACTAATTCATCATCGC 590 |||| |||||||| | |||| |||||| || ||||| |||||||| ||||||||||||| Sbjct 543 TTCTTACATCAAGTCTTTCTAGAAAGATCATGGATAGTTTTCGCACAAATTCATCATCGC 602 Query 591 A-ACAGCCGCAACTTGAAGGCATGGTTGAGTTTATTGGATTGTTGAAGGTTACTATCAAA 649 | || | | | ||||| ||||| ||||||||||||||||||||||| ||||| || Sbjct 603 AGAC-GATGTTTCAGGAAGGAATGGTAGAGTTTATTGGATTGTTGAAGGTGACTATTAAG 661 Query 650 AAGGGTAAC-AATTTAGCCGTCCGAGATATGATGTCAAGTGATCCCTATGTTGTGTTGAC 708 ||||| ||| || ||||| || |||| ||||||||||||||||| ||||||||||||| Sbjct 662 AAGGG-AACTAACTTAGCAATCAGAGACATGATGTCAAGTGATCCATATGTTGTGTTGAA 720 Query 709 TCTAGGACAA-CAGAAGGCT-CA-ATCTACTGT-AGTGAAGAGCAACTTGAACCCGGTCT 764 |||||| || || || || || | | ||||| | |||| || || ||||||||||| | Sbjct 721 TCTAGGG-AAGCAAAAA-CTTCAGA-CAACTGTTA-TGAATAGTAATTTGAACCCGGTAT 776 Query 765 GGAA-CGAGGAACTCATGCTCTCTGTTCCTCATAACTATGGCTCAGTGAAATTGCAAGTG 823 |||| | || |||||||||| ||||||||| | | ||||||| | ||||||||||||||| Sbjct 777 GGAATCAAG-AACTCATGCTGTCTGTTCCTGAGAGCTATGGCCCTGTGAAATTGCAAGTG 835 Query 824 TTTGATTATGACACATTTTCTGCTGATGACATAATGGGAGAAGCTGAGATTGATATCCAA 883 | ||||||||| |||||||||||||||||||||||||||||||| || |||||||| ||| Sbjct 836 TATGATTATGATACATTTTCTGCTGATGACATAATGGGAGAAGCAGATATTGATATACAA 895 Query 884 CCTCTGATTACATCTGCAATGGCTTTTGGAGACCCTGAAATGTTTGGAGATATGCAGATT 943 ||| |||| |||||||||||||||||||| || || ||||||||||| |||||||||||| Sbjct 896 CCTTTGATAACATCTGCAATGGCTTTTGGGGATCCAGAAATGTTTGGGGATATGCAGATT 955 Query 944 GGAAAATGGCTGAAATCGCACGACAATGCTCTTA-TAGAAGATAGCATCATCAACATTGC 1002 || |||||||| |||||||| || || | ||| |||| || || ||||| ||||||| Sbjct 956 GGGAAATGGCTAAAATCGCATGATAACCCA-TTAATAGATGACAGTATCATTAACATTGT 1014 Query 1003 AGATGGTAAAGTGAAACAAGAGGTTCAGATCAAGCTTCAGAATGTTGAATCTGGTGAACT 1062 ||||| ||||||||||| |||||||||||||||||||||||||| || ||||| ||| | Sbjct 1015 TGATGGGAAAGTGAAACAGGAGGTTCAGATCAAGCTTCAGAATGTAGAGTCTGGAGAATT 1074 Query 1063 AGAACTAGAAATGGAGTGGCTGCCTCTTGACCAATAA 1099 ||| ||||||||||| |||||||| |||||||||||| Sbjct 1075 AGAGCTAGAAATGGAATGGCTGCCACTTGACCAATAA 1111 > AT2G14490.1 | Symbols: | pseudogene, ARF GTPase-activating domain-containing protein, similar to zinc finger and C2 domain protein GI:9957238 from (Arabidopsis thaliana); blastp match of 53% identity and 4.3e-27 P-value to GP|19386828|dbj|BAB86206.1||AP003735 putative zinc finger and C2 domain protein {Oryza sativa (japonica cultivar-group)} | chr2:6164999-6165986 REVERSE LENGTH=988 Length=988 Score = 117 bits (63), Expect = 3e-25 Identities = 79/87 (91%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 123 CAGGTAAAAGGAGAATAAGGGATCTTTTAACTCAATCTGATAACCGAGTCTGCGCTGATT 182 |||||||||||||||| || |||||||||| |||| |||||||||||||||||||||||| Sbjct 173 CAGGTAAAAGGAGAATCAGAGATCTTTTAAATCAACCTGATAACCGAGTCTGCGCTGATT 232 Query 183 GTGGCGCTCCAGATCCTAAGTGGGCGT 209 |||||||| | | |||||| ||||||| Sbjct 233 GTGGCGCTTCTGTTCCTAAATGGGCGT 259 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59738648550 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5