BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492772
Length=2287
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21150.1 | Symbols: HAP6 | ribophorin II (RPN2) family prote... 3541 0.0
> AT4G21150.1 | Symbols: HAP6 | ribophorin II (RPN2) family protein
| chr4:11278429-11283848 FORWARD LENGTH=2437
Length=2437
Score = 3541 bits (1917), Expect = 0.0
Identities = 2166/2283 (95%), Gaps = 29/2283 (1%)
Strand=Plus/Plus
Query 1 TCCTAGGCTTACCTCAAACCTCAGTCTCCGTTGACTACTGAGACTCGTCGACCTCTGA-- 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17 TCCTAGGCTTACCTCAAACCTCAGTCTCCGTTGACTACTGAGACTCGTCGACCTCTGATC 76
Query 59 ----TC--CGA-T-T-C-GATCTACTTCCGATCTTGATGATGGCCGGAGGTGGCGTACGA 108
|| ||| | | | ||||||||||||||||||||||||||||||||| ||||||
Sbjct 77 CGCTTCTTCGACTATACGGATCTACTTCCGATCTTGATGATGGCCGGAGGTAACGTACGG 136
Query 109 TTTCTGGTGTTGATACTCGTTGTAGCAATTTGCGGTGCTGCTTCTGTTTTCCAGCCGATC 168
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 137 TTTCTGGTTTTGATACTCGCCGTAGCAATTTGCGGTGCTGCTTCTGTTTTCCAGCCGATC 196
Query 169 TCAGACTCTCACCGATCTGCGGCTGTGGATGTCTTCGTACCAGTCGATGGATCATACAAA 228
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 197 TCAGACTCTCACCGATCTGCGGCTCTGGATGTCTTCGTACCAGTCGATGGATCATACAAA 256
Query 229 AGCTTGGATGAGGCATATGAAGCATTAAAGACTTTGGAGATTCTTGGAATTGATAAAAAG 288
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 AGCTTGGAGGAGGCATATGAAGCATTAAAGACTTTGGAGATTCTTGGAATTGATAAAAAG 316
Query 289 TCTGATTTTAGCTCATCGACTTGTGAGAATGTCGTTAAAGTTCTTGGGTCGTCTTCTTCT 348
|||||| |||||||| ||||||||||||||| |||||||||||| |||||||||||||
Sbjct 317 TCTGATCTTAGCTCAAAGACTTGTGAGAATGTGGTTAAAGTTCTTCAGTCGTCTTCTTCT 376
Query 349 ACTCTTAAGGATGCATTTTATGCGTTAAACATTAATGGGATTCTGAAATGTAAAATTGGT 408
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 377 ACTCTTAAGGATGCATTTTATGCGTTAAACGTTAATGGGATTCTAAAATGTAAAATTGGT 436
Query 409 GAAGCTGGTCCTAAGGACATTGTTTCTCAACTTCAAGCTGGTGTTAAAGATGCCAAGTTA 468
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 437 GAAGCTGGTCCTAAGGACATTGTTTCTCAACTTCAAGCTGGTGTTAAAGATGCGAAGCTA 496
Query 469 TTGCTTGACTTCTATTATTCTGTCAGAGGCTTGGTGCTGGTTAAGGAGCAATTTCCTGGA 528
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 497 TTGCTTGATTTCTATTATTCTGTCAGAGGCTTGGTGCTGGCTAAGGAGCAATTTCCTGGA 556
Query 529 GCTGATATAAGTCTTGGAGATGCTGAAGCCATTTTTCGTTCCATCAAGGCTCTTAGCCAA 588
|| ||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct 557 ACTCATATAAGTCTTGGAGATGCCGAAGCCATTTTCCGTTCCATCAAGTCTCTTAGCCAG 616
Query 589 AGTGATGGAAGATGGCGCTATAGCTCCAGCAATCCAGAATCAAGCACCTTTGCTGCTGGC 648
|||||||||||||||||||| ||||||| |||||| ||||||||||| ||||||||||||
Sbjct 617 AGTGATGGAAGATGGCGCTACAGCTCCAACAATCCCGAATCAAGCACTTTTGCTGCTGGC 676
Query 649 TTAGCCTACGAAACGCTTGCTGGAGTGATTTCATTAGCACCTTCAGAGCTTGATCCATCT 708
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 677 TTAGCCTATGAAACGCTTGCTGGAGTGATTTCATTAGCACCTTCAGAGTTTGATCCATCT 736
Query 709 TTGATCCAGACGTTGAAGAAGGGTATCCTGAAGCTATT-TGACAGTATCCAAAAATTTGG 767
||||||||| || |||||| ||||||||||||||| || ||||||||||||||||
Sbjct 737 TTGATCCAGTCGGTGAAGACGGGTATCCTGAAGCT-TTCTGACAGTATCCAAAAA----- 790
Query 768 TATGCACGATGGGACATTTTACTTCGATGAGAAGTCTGTTGATGCAAGTCAAGGCCCGAT 827
|||| | |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 791 TATG-ATGATGGGACATTTTATTTTGATGAGAAGTCTGTTGATGCAAGTCAAGGCCCGAT 849
Query 828 CTCAACAACTGCATCAGTAATTAGAGGGCTCACGTCATTTGCAGCTTCAGAATCCACAGG 887
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 850 CTCAACAACTGCATCAGTTATTAGAGGGCTCACGTCATTTGCAGCTTCAGAATCCACAGG 909
Query 888 ATTGAACCTTCCAGGTGATAAGATAGTTGGTCTGGCCAAATTCTTTCTGGGTGTTGGAAT 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 ATTGAACCTTCCAGGTGATAAGATAGTTGGTCTGGCCAAATTCTTTCTGGGTGTTGGAAT 969
Query 948 TCCTGGTGATGCCAAGGACTTCTTCAACCAAATAGATGCACTAGCTTGTTTGGAAGACAA 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 TCCTGGTGATGCCAAGGACTTCTTCAACCAAATAGATGCACTAGCTTGTTTGGAAGACAA 1029
Query 1008 CAAGTTTTCTGTCCCACTCATCTTGTCTCTTCCATCTACTGTCATTTCATTGACAAAGAA 1067
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1030 CAAGTTTTCTGTTCCACTCATCTTGTCTCTTCCATCCACTGTCATTTCATTGACAAAGAA 1089
Query 1068 AGAGCCTCTGAAGGTTAAAGTGAGCACTGTACTGGGTTCGAAGGCACCAGCTCTTAGTGT 1127
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1090 AGAGCCTCTGAAGGTTAAAGTTAGCACTGTACTGGGTTCGAAGGCACCAGCTCTTAGTGT 1149
Query 1128 GAAGCTCACACAAGCTCTAAGTTCTAAATCAGTGGATTCGTCTGTAATAAATAACCAGGA 1187
|||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 1150 GAAGCTTACACAAGCTCTAAGTTCTAAGTCAGTGGATTCATCTGTAATTAATAACCAGGA 1209
Query 1188 GCTTAAGTTTGACTCTGACAGTGCAACGTACTTCCTGGACTCCTTTCCCAAGAACTTTGA 1247
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 GCTTAAGTTTGACGCTGACAGTGCAACGTACTTCCTGGACTCCTTTCCCAAGAACTTTGA 1269
Query 1248 CGTTGGAAAATATACATTTGTATTTGAGATTTTAG-TGGATGATTCAGCACATGAGAAAG 1306
| ||||||||||||| ||||||||| ||||| | | ||||||| ||||||||||||||||
Sbjct 1270 CATTGGAAAATATACTTTTGTATTTAAGATTGT-GCTGGATGAATCAGCACATGAGAAAG 1328
Query 1307 TATACATAACCGAAGCTCAAACAAAAGTGCCTGTAGCTGCCATAGGAGTTATTGGCATTG 1366
|||||||||| ||||||||||||||||||||| ||||||||| ||||| |||| ||||||
Sbjct 1329 TATACATAACTGAAGCTCAAACAAAAGTGCCTATAGCTGCCACAGGAGCTATTAGCATTG 1388
Query 1367 AAAATGCAGAAATTGCTGTACTTGACAGTGACATTGGGAGCGTTGAATCTCAGAAAAAGC 1426
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1389 AAAATGCAGAAATTGCTGTACTTGACAGTGACATTGGAAGCGTTGAATCTCAGAAAAAGC 1448
Query 1427 TAGATTTAACTAAAGATGGAGAGGTATCATTATCAGCAAACCACCTTCAAAAGCTACGCC 1486
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1449 TAGATTTAACTAAAGATGGAGCGGTATCATTATCAGCAAACCACCTTCAAAAGCTACGCC 1508
Query 1487 TGTCGTTCCAGTTAACTACTCCACTTGGCAATTCGTTTAAGCCACACCAGGCATTTTTCA 1546
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1509 TGTCATTCCAGTTAACTACTCCACTTGGCAATGCGTTTAAGCCACACCAGGCATTTTTCA 1568
Query 1547 AGCTGAAACATGAGTCACAGGTCGAGCATATCTATCTCGTGAAAACTTCTGGAAAGAAGT 1606
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1569 AGCTGAAACATGAGTCACAGGTCGAGCATATCTTTCTCGTGAAAACTTCTGGAAAGAAGT 1628
Query 1607 CTGAATTAGTTCTAGATTTTCTTGGATTGGTTGAGAAGCTCTACTACCTCTCTGGTAAAT 1666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CTGAATTAGTTCTAGATTTTCTTGGATTGGTTGAGAAGCTCTACTACCTCTCTGGTAAAT 1688
Query 1667 ATGAGATCCAGCTAACTATTGGGGATGCTTCTATGGAGAACTCTTTACTGAGTAATATTG 1726
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1689 ATGAGATACAGCTAACCATTGGAGATGCTTCTATGGAGAACTCTTTACTGAGTAATATTG 1748
Query 1727 GCCACATCGAACTAGACCTACCAGAGCGTCCAGAGAAGGCGCCTCGTCCTCCTCTACAAT 1786
| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1749 GTCACATTGAACTAGACCTACCAGAGCGTCCAGAGAAGGCGACTCGTCCTCCTCTACAGT 1808
Query 1787 CTACTGAACCTTACTCAAGATATGGGCCAAAAGCTGAAATATCACACATATTCAGGATTC 1846
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1809 CTACTGAGCCTTACTCAAGATATGGGCCAAAAGCTGAAATATCACACATATTCAGGATTC 1868
Query 1847 CTGAAAAGCTTCCAGCAAAGCAGCTCTCACTAGTTTTCTTGGGTGTTATCGTCCTCCCAT 1906
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1869 CTGAAAAGCTTCCAGCAAAGCAGCTCTCACTAGTTTTCTTGGGTGTTATCGTTCTCCCAT 1928
Query 1907 TCATCGGTTTCCTGATAGGGCTTACGCGGTTGGGAGTGAACATAAAGAGCTTCCCATCGT 1966
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1929 TCATCGGTTTCCTGATTGGGCTTACGCGGTTGGGAGTGAACATAAAGAGCTTCCCATCGT 1988
Query 1967 CGACTGGATCTGCAATATCGGCTTTACTTTTCCACGGCGGAATTGGAGCTGTTTTGCTTC 2026
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1989 CGACTGGATCTGCAATATCCGCTTTACTTTTCCACTGCGGAATTGGAGCTGTTTTGCTTC 2048
Query 2027 TCTATGTGCTTTTCTGGTTAAAGTTGGATCTGTTCACGACTCTCAAGGCACTTTCTTTGT 2086
| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 2049 TATATGTGCTATTCTGGTTGAAGTTGGATCTATTCACGACTCTCAAGGCACTTTCTTTGT 2108
Query 2087 TGGGAGTGTTTCTGTTGTTCGTCGGACACAGAACACTATCTCAGCTCGCAGCAGCATCGA 2146
|||||||||||||||||||||| |||||||||||||||||||| || ||| ||||||| |
Sbjct 2109 TGGGAGTGTTTCTGTTGTTCGTGGGACACAGAACACTATCTCAACTTGCATCAGCATCAA 2168
Query 2147 ACAAGTTGAAATCTGCTTGAAGAAGA-GAAATTCGTTATGACGGATCtttttttttGGTT 2205
|||||||||||||||||||||||||| ||| | | ||||| |||||||||||| ||||
Sbjct 2169 ACAAGTTGAAATCTGCTTGAAGAAGAAGAACT-CACTATGAAGGATCTTTTTTT--GGTT 2225
Query 2206 TATGCGTATTT-CAGTTTTGTAGTGTTGCTTATATAGATTATGGTGATAGACAAATTCAA 2264
||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 2226 TATGCGTATTTTCAGTTTTGTAGTATTGCTTATA--GATTATGGTGATAGACAAATTCAA 2283
Query 2265 AAG 2267
|||
Sbjct 2284 AAG 2286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113503432245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5