BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492773
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21140.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 941 0.0
> AT4G21140.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: copper ion binding (TAIR:AT4G05400.2); Has 41 Blast
hits to 41 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes
- 1 (source: NCBI BLink). | chr4:11277491-11278222
REVERSE LENGTH=732
Length=732
Score = 941 bits (509), Expect = 0.0
Identities = 655/723 (91%), Gaps = 20/723 (3%)
Strand=Plus/Plus
Query 1 ATGATCCGATTCGCGAGACCAAAACCTATAATCGACTCAGTGAGTCACAATCTTCTCCAG 60
|||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1 ATGATCAGATTCGCGAGACCAAAACCTATAATTGACTCAGTGAGTTACAATCTTCTCCAG 60
Query 61 AAATGTTACGCTAGTGGAACCCCTAAAGGAAAATCGAAGCTGAAGACAGGCCAACCATTG 120
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 61 AAATGTTACGCTAGTGGAACCCCCAAAGGAAAATCGAAGCTGAAGACAGGCCAATCATTG 120
Query 121 AAACGCAACAAACTCACAATCAAGAAAGGCGGAGGTGGTGATGCGGCGGTTAAGGGAAAA 180
||||||||||||||||||||||| |||||| ||| | || |||||| | || | |
Sbjct 121 AAACGCAACAAACTCACAATCAAAAAAGGC---GGT-G-GAAACGGCGG-T---GGCAGA 171
Query 181 GGAAGAATGATCA--CAGAT--GAGAAACA-GAAGCTAT-AC-GATCAATGCATAAACGC 233
|| | |||| | ||| | |||| | |||| || | |||||||||||||||||
Sbjct 172 GG-TG-GTGATGAGGTGGATAAGGGAAA-AGGAAG-AATCTCAGATCAATGCATAAACGC 227
Query 234 TCCTTGTCCTGTTCGTTACCTGAGACCTAAGGAAAGAGAGCGAGAAGCGAAACGAGAGAA 293
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 228 TCCTTGTCCTGTTCGTTACCTGAGACCTAAGGAAAGAGAGCGAGAAGCGAGACGAGAGAA 287
Query 294 ATTAGGGCTAATCAGCAAAGCGAGGCAAAAAGAGATTGATTTTCAGAAGAAAGGTGGATC 353
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 GCTAGGGCTAATCAGTAAAGCGAGGCAAAAAGAGATTGATTTTCAGAAGAAAGGTGGATC 347
Query 354 TTTTACTATGGGAGTTACTACTGAGCCGATGAGAATTGGGACTCAAGGATTGGATTACAT 413
||||| |||||||||||||||| ||||||||| |||||||||| |||||||||||||||
Sbjct 348 CTTTACGATGGGAGTTACTACTGCGCCGATGAGGATTGGGACTCCAGGATTGGATTACAT 407
Query 414 TTCGTTAGGGATTTTTACGGAAGATGAGTTACCAAAGTATAAGGTTACAGTGGAGGATGG 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 TTCGTTAGGGATTTTTACGGAAGATGAGTTACCAAAGTATAAGGTTACAGTGGAGGATGG 467
Query 474 GATTAGACTTGCGAAAGAGTATAGTAGAGTGCTTATGAGAGAGCATAGAGCGAGACGTGT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 GATTAGACTTGCGAAAGAGTATAGTAGAGTGCTTATGAGAGAGCATAGAGCGAGACGTGT 527
Query 534 AGCCGAGATTAATTTGGTGAAGTTGAGGAAAGCTGCGATTGAGGCATTGCCGGATAATTT 593
||| ||||||| |||| ||||| ||||||| |||||| |||||||||||||||| |||||
Sbjct 528 AGCGGAGATTAGTTTGATGAAGATGAGGAACGCTGCGGTTGAGGCATTGCCGGAGAATTT 587
Query 594 GAGGAAGGGGGCGTTGGAGCGTGATTTGACTCCGTTTCCGGTGAATCGAGGTTTGGCTAC 653
|| ||||| ||| || | |||||||||||||||||||||||||| ||||||| ||||||
Sbjct 588 GAAGAAGGCGGCTTTAGTGCGTGATTTGACTCCGTTTCCGGTGAGTCGAGGTACGGCTAC 647
Query 654 TCTTACGCCGCCTATTGAAGGGTATTTGGAGAAGATTATGAATGCGGCGGCTAAGAAGAG 713
||||| || |||||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct 648 GCTTACTCCACCTATTGAAGGGTATTTGGAGAGGATTATGAATGCTGCGGCTAGGAAGAG 707
Query 714 CTC 716
|||
Sbjct 708 CTC 710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35967649252
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5