BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492774
Length=1432
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21130.1 | Symbols: EMB2271 | Transducin/WD40 repeat-like su... 1096 0.0
> AT4G21130.1 | Symbols: EMB2271 | Transducin/WD40 repeat-like
superfamily protein | chr4:11274296-11276299 FORWARD LENGTH=1465
Length=1465
Score = 1096 bits (593), Expect = 0.0
Identities = 746/818 (91%), Gaps = 17/818 (2%)
Strand=Plus/Plus
Query 1 AGGGAGagaagaatgaaattcaagaacgagaagaagaaaggct-tcggggcgaagagaat 59
|||||||||||||||||| | ||||||||||||||| | | |||||||||||||
Sbjct 1 AGGGAGAGAAGAATGAAA--C----TCGAGAAGAAGAAAGG-TATTGGGGCGAAGAGAAG 53
Query 60 cgggaaaaagaGTTCCATCGATCGA-GATCCTTTCTTCGAGGAAGAGACGA-AGAAGCGG 117
|||||||||||||||||||||| | ||||||||||| ||||||||||| | ||||||||
Sbjct 54 AGGGAAAAAGAGTTCCATCGATC-ATGATCCTTTCTTAGAGGAAGAGAC-AGAGAAGCGG 111
Query 118 GGAAAATTCAATTAC-A--ATGATGATGATATCGAGTCTGTCGAATCTGAAGAGGAAGGA 174
|||||||||||||| | |||||||||||||||| ||||| |||||||||||||||||
Sbjct 112 AGAAAATTCAATTACGATGATGATGATGATATCGAATCTGTAGAATCTGAAGAGGAAGGG 171
Query 175 AAGGTTGGTGAGGAGATAGAGGATAAGTTTGCCT-ATGAGACGGTAGGTGAGAAACGAAA 233
||||||||||||||| | |||||| |||||| || ||||||||||||| |||||||||||
Sbjct 172 AAGGTTGGTGAGGAGGTGGAGGATGAGTTTG-CTCATGAGACGGTAGGCGAGAAACGAAA 230
Query 234 GAGATTTTTGGAAGAGACTTCGGATAGAATCGAAGAGGCGAAGCGGAAAGAGCGTGAAGA 293
|||| | ||| || |||| | ||||||||||||||||||| | || ||||| ||||||
Sbjct 231 GAGACTGGCGGAGGATACTTTGAATAGAATCGAAGAGGCGAAACAGAGAGAGCATGAAGA 290
Query 294 AGATGACGAGGAAGATGATGGTGTTAGAGATTCGCTTGTGGTGAAGACTCTAATGCAGGA 353
|||| ||||||||||||||| | |||||||||||||||||| |||||||||||||||||
Sbjct 291 AGATAACGAGGAAGATGATGATTTTAGAGATTCGCTTGTGGCAAAGACTCTAATGCAGGA 350
Query 354 GCAGCTCGAGAAGAGTGGTCGTGTTCGGAGAGCCATTGCATCGAGGGTTCAAGAACCACG 413
|||||||||||||||||||||||||||||||||| ||||| |||||||||||| | ||
Sbjct 351 ACAGCTCGAGAAGAGTGGTCGTGTTCGGAGAGCCAATGCATTGAGGGTTCAAGATCTACA 410
Query 414 GAGTAGCGATGAGTTTCGTATTATAGTCAAACACCAACAATCTGTTACAGCAGTAGCTCT 473
|||||||||| |||||||| ||||||||||||||||||| |||||||||| |||||||||
Sbjct 411 GAGTAGCGATAAGTTTCGTGTTATAGTCAAACACCAACATTCTGTTACAGGAGTAGCTCT 470
Query 474 ATCAGATGATGATTCAAGAGGGTTCTCAGTTTCGAAGGACGGTACTATTCTGCATTGGGA 533
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 471 ATCAGATGATGATTCAAGAGGGTTCTCAGTTTCGAAAGACGGTACTATTCTGCATTGGGA 530
Query 534 TGTATCGTCTGGTAAAAGCGATGAGTACAAATGGCCAAGCGATGAAGTTTTGAAGTCTCA 593
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TGTATCTTCTGGTAAAAGTGATGAGTACAAATGGCCAAGCGATGAAGTTTTGAAGTCTCA 590
Query 594 CGGATTAATCTTCCAGGAATCTTGGAATACAAGACATAACAAACAATCTCTAGCGCTAGC 653
||| |||| ||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 591 CGGGTTAAAGTTCCAGGAATCTTGGTATACAAGACATAACAAACAATCTCTAGCATTAGC 650
Query 654 AGTTAGCTCTGATGGCCGTTATTTAGCGACTGGAGGAGTTGATTGCCATGTTCATTTGTG 713
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TGTTAGCTCTGATGGCCGGTATTTAGCGACTGGAGGAGTTGATTGCCATGTTCATTTGTG 710
Query 714 GGATATTCGTACACGAGAGCATGTCCAGGCCTTTACAGGTCACCGTGGCATTGTTTCTAG 773
|||||| || |||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 711 GGATATCCGAACACGAGAGCATGTCCAGGCTTTTACAGGTCACTGTGGCATTGTTTCTAG 770
Query 774 TCTATGCTTTAGAGAAGGAACTGCAGAACTCTTTTCTG 811
||||||||||||||||||||||||||||||||||||||
Sbjct 771 TCTATGCTTTAGAGAAGGAACTGCAGAACTCTTTTCTG 808
Score = 961 bits (520), Expect = 0.0
Identities = 588/622 (95%), Gaps = 0/622 (0%)
Strand=Plus/Plus
Query 811 GAAGATAGAATATATATAGACTCAAGTTTTGGACACCAGTCTGAAATTCTAAGCATTGAT 870
||| |||||| ||||||||| ||| |||||||||||||||||||| ||||| |||||||
Sbjct 844 GAACATAGAACATATATAGAATCATGTTTTGGACACCAGTCTGAACTTCTATCCATTGAT 903
Query 871 GCTCTAAGAAGGGAGCGCGTTCTCAGTGTTGGACGCGATAGAACATTGCAGTTATACAAG 930
|||||| | |||||||| ||||||||||||||||||||||||||| |||||||||| |||
Sbjct 904 GCTCTAGGGAGGGAGCGTGTTCTCAGTGTTGGACGCGATAGAACAATGCAGTTATATAAG 963
Query 931 GTTCCCGAGTCTACTCATTTGATCTTTCGAGCTTCTGAATCAAATCTTGAGTGCTGCTGT 990
|||||||||||||||| ||||||| ||||||||| ||||||||| ||||||||||||||
Sbjct 964 GTTCCCGAGTCTACTCGGTTGATCTATCGAGCTTCCGAATCAAATTTTGAGTGCTGCTGT 1023
Query 991 TTTGTTAGTAGTGATGAGTTTTTGGCCGGATCAGATAATGGAAGCATTTCACTTTGGTCC 1050
||||||| |||||||||||||||| ||||||||||||||||||| ||| |||||||||||
Sbjct 1024 TTTGTTAATAGTGATGAGTTTTTGTCCGGATCAGATAATGGAAGTATTGCACTTTGGTCC 1083
Query 1051 ATTTTGAATAAGAAACCAGTGTTTATCGTTAAGAATGCTCACCACGTGATAGCTGATCAT 1110
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1084 ATTTTGAAAAAGAAACCAGTGTTTATCGTTAACAATGCTCACCACGTGATAGCTGATCAT 1143
Query 1111 GATTCTGTTAACCATAACTGTACATCAGCATGTTCTTGGGTCAGTTCAGTTGCTGTCTGT 1170
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1144 GATTCTGTTAACCATAACTGTACACCAGCATGTTCTTGGGTCAGTTCAGTTGCTGTCTGT 1203
Query 1171 AGAGGTAGCGATCTCGCTGCATCGGGAGCTGGTGATGGTTGTGTGCGTTTATGGGGTGTT 1230
||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1204 AGAGGTAGCGAGCTTGCTGCATCGGGAGCTGGTAATGGTTGTGTGCGTTTATGGGGTGTT 1263
Query 1231 GAAAGTGGATCTAGAGCTATACAACCTTTATATGAGCTTCCACTTCCTGGGTTTGTGAAC 1290
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1264 GAAAGTGGATCTAGTGCTATACAACCTTTATACGAGCTTCCACTTCCTGGGTTTGTGAAC 1323
Query 1291 TCTTTAGCTTTTGCAAAATCTGGCCAGTTTCTGATAGCTGGTGTTGGACAGGAACCGCGA 1350
||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||
Sbjct 1324 TCTTTAGCTTTTGCAAAATCTGGTCGGTTTCTGATCGCTGGTGTTGGACAGGAACCGCGG 1383
Query 1351 CTCGGAAGATGGGGTTGCTTAAAATCTGCGCAGAACGGTGTTACAATACATCCCTTAAGG 1410
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1384 CTCGGAAGATGGGGTTGCTTAAAATCTGCGCAGAACGGTGTTGCAATACATCCCTTAAGG 1443
Query 1411 CTTTCATGAAGGGATCTCAATT 1432
||||||||||||||||||||||
Sbjct 1444 CTTTCATGAAGGGATCTCAATT 1465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581966270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5