BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492779
Length=916
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21090.2 | Symbols: ATMFDX2, MFDX2 | MITOCHONDRIAL FERREDOX... 1190 0.0
> AT4G21090.2 | Symbols: ATMFDX2, MFDX2 | MITOCHONDRIAL FERREDOXIN
2 | chr4:11256459-11258581 REVERSE LENGTH=985
Length=985
Score = 1190 bits (644), Expect = 0.0
Identities = 754/807 (93%), Gaps = 8/807 (1%)
Strand=Plus/Plus
Query 113 GTTTAAAGCTTATACCTTTGGGCGGCGCCAGAATCATGATCTTCCATAGGCTATTAAGAT 172
||||||||||||||||||||| |||||||| || |||| ||||||||||||||| |||||
Sbjct 153 GTTTAAAGCTTATACCTTTGGACGGCGCCAAAAACATGGTCTTCCATAGGCTATCAAGAT 212
Query 173 TAGGTTCTCGCATTGTTAAAGAGCTCCCAAGAG-GTATA-TTTATGCCAGTGTTTGGAAT 230
||||||||||||||||||||||||||||||||| | | | || || || ||| |||||
Sbjct 213 TAGGTTCTCGCATTGTTAAAGAGCTCCCAAGAGAG-AGACATT-TGTCAATGTGTGGAAA 270
Query 231 GAGGATTCTACACAGGTCTTATGGCCAGTATCTTCAATCTTCGCCAATGCTACAAAGGCA 290
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 271 GAGGATTCTTCAAAGGTCTTATGGCCAGTATCTTCAATCTTCGCCAATGCTGCAAAGGCA 330
Query 291 AACTAGGAGTTTTAAGGAAGCATTATTCTCGAATAATCATAAGTTTTGTACATCTTTCAG 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 AACTAGGAGTTTTAAGGAAGCATTATTCTCGAATAATCATAAGTTTTGTACATCTTTCAG 390
Query 351 CACTACCTCTGAGAAAGGTGGCGAAGAAACAGAAAAGATAAACGTTATCTTTGTTGATAA 410
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 391 CACTACCTCTGAGAAAGGTGGCGAAAAAACAGAAAAGATAAACGTTACCTTTGTTGATAA 450
Query 411 AGATGGAGAGGAAATTCATATTAAGGTTCCAATAGGAATGAACATCCTTGAAGCTGCTCA 470
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 451 AGATGGAGAGGAAATTCATATCAAGGTTCCAGTAGGAATGAACATCCTTGAAGCTGCTCA 510
Query 471 TGAAAATGATATAGAACTCGAAGGGGCGTGTGAAGGCTCTCTAGCGTGTTCAACGTGCCA 530
||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 511 TGAAAATGATATAGAACTCGAAGGGGCATGTGAAGGTTCTCTAGCGTGTTCAACCTGCCA 570
Query 531 TGTGATTGTTATGGACACTGAATACTACAACAAACTCGAAGAACCAACTGATGAAGAGAA 590
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 571 TGTGATTGTTATGGACACCAAATACTACAACAAACTCGAAGAACCAACAGATGAAGAGAA 630
Query 591 TGATATGCTAGATCTTGCTTTCGGGTTAACAGCAACGTCACGATTGGGATGTCAAGTGAT 650
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 631 TGATATGCTAGATCTCGCTTTCGGGTTAACAGCAACGTCGCGATTGGGATGTCAAGTCAT 690
Query 651 CGCAAAACCAGAGCTAGATGGAGTACGCTTAGCCATTCCCTCAGCTACTAGAAATTTTGC 710
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 691 CGCAAAACCAGAGCTAGATGGAGTACGCCTAGCCATTCCTTCAGCTACTAGAAATTTTGC 750
Query 711 GGTTGATGGGTTTGTTCCAAAACCTCACTAGCCACTTAAAAGTCTCAGAGCAGAGGATTT 770
||||||||||||||||||||||||||||||| ||||||| |||||||||||| | |||||
Sbjct 751 GGTTGATGGGTTTGTTCCAAAACCTCACTAGTCACTTAATAGTCTCAGAGCAAATGATTT 810
Query 771 TTCGAGGACAAAACTCGTGACATAAAA-TTACCCTTAGGGAGAGTTATACAAATGTAATT 829
||||| | ||||| | | |||||||| ||||||||| ||||||| ||||||||||||||
Sbjct 811 TTCGAAAA-AAAACCCATTACATAAAAATTACCCTTACGGAGAGTCATACAAATGTAATT 869
Query 830 CAGACGGTGAGATTTCAGCTCAGCTTGTTTTTGCAGCATTGTTTTATTGTGTGTCTTGAG 889
||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||
Sbjct 870 CAGACGGTGAGATTTCAACTCAGCTTTTTTTTGCAGCATTGTTTTATTGTGT--CTTGAG 927
Query 890 TTTAATTTAGATTTCATGACAAAGCTA 916
|||||| || ||||||||| |||||||
Sbjct 928 TTTAATATATATTTCATGAAAAAGCTA 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44758624977
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5