BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492780
Length=545
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21080.1 | Symbols: | Dof-type zinc finger domain-containin... 710 0.0
AT4G21040.1 | Symbols: | Dof-type zinc finger domain-containin... 660 0.0
AT1G21340.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 76.8 2e-13
AT4G00940.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 71.3 9e-12
> AT4G21080.1 | Symbols: | Dof-type zinc finger domain-containing
protein | chr4:11254602-11255351 REVERSE LENGTH=750
Length=750
Score = 710 bits (384), Expect = 0.0
Identities = 497/551 (90%), Gaps = 9/551 (2%)
Strand=Plus/Plus
Query 1 ATGGATGACTTGAATGTTTTTGCGAATGAAGACAATCAAGTGAATGGTGTGAAG--CCCA 58
|||||| ||||||||||||| || |||||||||||||||||||||| ||||||| ||||
Sbjct 1 ATGGATAACTTGAATGTTTTCGCAAATGAAGACAATCAAGTGAATGATGTGAAGCCCCCA 60
Query 59 -CACCTCCACCGCGAGTATGTGCAAGGTGTGATTCTGATAACACCAAGTTTTGTTATTAC 117
|||| ||||| ||||| ||||||||||||||||||||||| || || ||||||||||||
Sbjct 61 CCACCACCACCTCGAGTGTGTGCAAGGTGTGATTCTGATAATACTAAATTTTGTTATTAC 120
Query 118 AACAACTACAGTTTGCTTCAACCGCGCTACTTCTGCAAGAACTGTCGTAGATACTGGACT 177
||||||||| || | |||| || || |||||||||||||||||||||||||||||||||
Sbjct 121 AACAACTACTGTGAGTTTCAGCCACGATACTTCTGCAAGAACTGTCGTAGATACTGGACT 180
Query 178 CATGGTGGGACTTTAAGGAACGTACCAATTGGTGGAAGCTC-TCGTGCCAAGCAGGCAAG 236
||||||||| ||||||| ||| |||||||||||||||| | ||||||||| | ||||||
Sbjct 181 CATGGTGGGGCTTTAAGAAACATACCAATTGGTGGAAG-TAGTCGTGCCAAACGGGCAAG 239
Query 237 GGTAAATCAACCTTCGGTTGCTCGGATGGTTCCTGTTGAGATCCAACCAGTTAACCATCA 296
||||||||||||||||||||||||||||||| ||||||||| ||||| || |||| ||||
Sbjct 240 GGTAAATCAACCTTCGGTTGCTCGGATGGTTTCTGTTGAGACCCAACGAGGTAACAATCA 299
Query 297 ACCTTTCT-TGAATGTCCAAGAAAACATTAATTTTGTTGGACCTTTTGGTGCTTCATCTT 355
|||||||| | ||||| ||||||||| || || |||||||| ||||||||||||||||||
Sbjct 300 ACCTTTCTCT-AATGTTCAAGAAAACGTTCATCTTGTTGGATCTTTTGGTGCTTCATCTT 358
Query 356 CATCTTCTGATGCTGCTGTTGGGAACCATTTCGGTTCTTTGTCTGATATTCATGGTGGTA 415
||||||||| || |||||||||||||| ||| |||||||||| |||||||||||||||||
Sbjct 359 CATCTTCTGTTGGTGCTGTTGGGAACCTTTTTGGTTCTTTGTATGATATTCATGGTGGTA 418
Query 416 TGGTAACAAATGTGCATCCAACTCGAACT-TTCCGACCAAATCATCGCTTAGCTTTCCCT 474
||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||| |
Sbjct 419 TGGTAACAAATTTGCATCCAACTCGAACTGTTC-GACCAAATCATCGCTTAGCTTTCCAT 477
Query 475 GATGGATCATTTGAGCAAGATTATTACGACGTCGGATCCGATAATCTTATGGTCAACCAA 534
|||||||||||||||||||| |||||||| || || |||||||||||| |||||||||||
Sbjct 478 GATGGATCATTTGAGCAAGACTATTACGATGTTGGGTCCGATAATCTTTTGGTCAACCAA 537
Query 535 CAAGTTGGTGG 545
|||||||||||
Sbjct 538 CAAGTTGGTGG 548
> AT4G21040.1 | Symbols: | Dof-type zinc finger domain-containing
protein | chr4:11234807-11235505 REVERSE LENGTH=699
Length=699
Score = 660 bits (357), Expect = 0.0
Identities = 488/551 (89%), Gaps = 9/551 (2%)
Strand=Plus/Plus
Query 1 ATGGATGACTTGAATGTTTTTGCGAATGAAGACAATCAAGTGAATGGTGTGAAG-C-CCA 58
|||||| |||| |||||| |||| |||||||||||||||||||||| ||||||| | |||
Sbjct 1 ATGGATAACTTCAATGTTGTTGCCAATGAAGACAATCAAGTGAATGATGTGAAGCCTCCA 60
Query 59 -CACCTCCACCGCGAGTATGTGCAAGGTGTGATTCTGATAACACCAAGTTTTGTTATTAC 117
|||| ||||||||||| |||||||| ||||||||||||||||| || |||||||| |||
Sbjct 61 CCACCCCCACCGCGAGTGTGTGCAAGATGTGATTCTGATAACACAAAATTTTGTTACTAC 120
Query 118 AACAACTACAGTTTGCTTCAACCGCGCTACTTCTGCAAGAACTGTCGTAGATACTGGACT 177
||||| || ||| | ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 AACAATTATAGTGAGTTTCAACCGCGCTACTTCTGCAAGAACTGTCGAAGATACTGGACT 180
Query 178 CATGGTGGGACTTTAAGGAACGTACCAATTGGTGGAAGCT-CTCGTGCCAAGCAGG-CAA 235
||||||||| ||||||| ||||||||||||||||| || | ||||||||||| || |||
Sbjct 181 CATGGTGGGGCTTTAAGAAACGTACCAATTGGTGGGAG-TAGTCGTGCCAAGC-GGACAA 238
Query 236 GGGTAAATCAACCTTCGGTTGCTCGGATGGTTCCTGTT-GAGATCCAACCAGTTAACCAT 294
|| ||||||||||||| ||||||| ||||||| ||||| || |||||||||| || ||||
Sbjct 239 GGATAAATCAACCTTCAGTTGCTCAGATGGTTTCTGTTGGA-ATCCAACCAGGTAGCCAT 297
Query 295 CAACCTTTCTTGAATGTCCAAGAAAACATTAATTTTGTTGGACCTTTTGGTGCTTCATCT 354
|||||||||| ||||| |||||||| | | | ||||||||| |||||||||||||||||
Sbjct 298 AAACCTTTCTTTAATGTTCAAGAAAATAATGACTTTGTTGGATCTTTTGGTGCTTCATCT 357
Query 355 TCATCTTCTGATGCTGCTGTTGGGAACCATTTCGGTTCTTTGTCTGATATTCATGGTGGT 414
||||||| || ||||||||| ||||||| ||| ||||||||||| ||||||||||||||
Sbjct 358 TCATCTTTTGTTGCTGCTGTAGGGAACCGTTTTAGTTCTTTGTCTCATATTCATGGTGGT 417
Query 415 ATGGTAACAAATGTGCATCCAACTCGAACTTTCCGACCAAATCATCGCTTAGCTTTCCCT 474
||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||| |
Sbjct 418 ATGGTAACAAATGTGCATCCAACTCAAACTTTTCGACCAAATCATCGCCTAGCTTTCCAT 477
Query 475 GATGGATCATTTGAGCAAGATTATTACGACGTCGGATCCGATAATCTTATGGTCAACCAA 534
||||||||||||||||||||||||| || || || || ||||||||| |||| ||||||
Sbjct 478 AATGGATCATTTGAGCAAGATTATTATGATGTTGGGTCTGATAATCTTTTGGTAAACCAA 537
Query 535 CAAGTTGGTGG 545
|||||||||||
Sbjct 538 CAAGTTGGTGG 548
> AT1G21340.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr1:7476087-7476869 FORWARD LENGTH=783
Length=783
Score = 76.8 bits (41), Expect = 2e-13
Identities = 68/81 (84%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 97 AACACCAAGTTTTGTTATTACAACAACTACAGTTTG-CTTCAACCGCGCTACTTCTGCAA 155
|||||||||||||||||||||||||||||||| ||| || || || | |||||||||||
Sbjct 139 AACACCAAGTTTTGTTATTACAACAACTACAGCTTGTCT-CAGCCTAGATACTTCTGCAA 197
Query 156 GAACTGTCGTAGATACTGGAC 176
| || ||| | ||||||||
Sbjct 198 GGGTTGCCGTCGTTACTGGAC 218
> AT4G00940.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr4:403320-404810 REVERSE LENGTH=970
Length=970
Score = 71.3 bits (38), Expect = 9e-12
Identities = 74/91 (81%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 97 AACACCAAGTTTTGTTATTACAACAACTACAGTTT-GCTTCAACCGCGCTACTTCTGCAA 155
|||||||||||||||||||||||||||||||| || || || || | ||||| || ||
Sbjct 314 AACACCAAGTTTTGTTATTACAACAACTACAGCTTAGCA-CAGCCTAGGTACTTGTGTAA 372
Query 156 GAACT-GTCGTAGATACTGGACTCATGGTGG 185
| || |||| ||||| |||||| | |||||
Sbjct 373 GT-CTTGTCGGAGATATTGGACTGAAGGTGG 402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26121756440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5