BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492783
Length=1810
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21065.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2638 0.0
> AT4G21065.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:11245954-11247807 FORWARD LENGTH=1854
Length=1854
Score = 2638 bits (1428), Expect = 0.0
Identities = 1690/1817 (93%), Gaps = 16/1817 (1%)
Strand=Plus/Plus
Query 1 ATGCCCACAAGAACAGAGCAAAATGTCTCCATTCTCAGAAACCTCTGTTCTGCTACTTCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCCACAAGAACAGAGCAAAATGTCTCCATTCTCAGAAACCTCTGTTCTGCTACTTCC 60
Query 61 CATGGTCGAGAAATGCATAAATCTCTTACAAACTTACGGCGTTTCATCGCTAACGAAACT 120
||||||||||||||||||||| ||||| ||||| ||||||||||||||| ||||||||||
Sbjct 61 CATGGTCGAGAAATGCATAAACCTCTTGCAAACCTACGGCGTTTCATCGATAACGAAACT 120
Query 121 CAGACAAATCCACGCTTTTTCAATTCGCCATGGATTCTCAATCTCCGACGCCGAGCTGGG 180
|||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| ||
Sbjct 121 CAGACAAATCCACGCTTTTTCAATCCGCCATGGAGTCTCAATCTCAGACGCCGAGCTTGG 180
Query 181 GAAACACCTCATCTTCTACCTCGTGTCTCTTCCTTCACCACCTCCAATGTCTTACGCTCA 240
||||||||||||||||||||| || ||||||||||| |||||||| ||||||||||||||
Sbjct 181 GAAACACCTCATCTTCTACCTTGTTTCTCTTCCTTCTCCACCTCCCATGTCTTACGCTCA 240
Query 241 CAAAGTTTTCTCCAAGATTGAGAAACCCATCAATGTCTTTATTTGGAACACATTGATCAG 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAAAGTCTTCTCCAAGATTGAGAAACCCATCAATGTCTTTATTTGGAACACATTGATCAG 300
Query 301 AGGCTACGCCGAGATTGGTAATTCCGTCTCTGCTGTTTCTCTTTACCGTGAGATGAGAGC 360
||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||
Sbjct 301 AGGCTACGCCGAGATTGGTAATTCCATCTCTGCTTTTTCTCTATACCGTGAGATGAGAGT 360
Query 361 CTCTGGTTTCGTCGAGCCAGATACTCATACTTACCCGTTTCTTCTTAAAGCTGTGG-GTA 419
||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||| | |
Sbjct 361 CTCTGGTTTGGTCGAGCCAGATACTCATACTTATCCGTTTCTTATTAAGGCTGTGACG-A 419
Query 420 AAATGGCGGATGTTAGGTTAGGAGAGACGATTCATTCCGTTGTTATACGAAGTGGGTTTG 479
||||||||||||||| |||||||||||||||||||| ||||||||| ||||||| ||||
Sbjct 420 CAATGGCGGATGTTAGATTAGGAGAGACGATTCATTCGGTTGTTATAAGAAGTGGCTTTG 479
Query 480 GTTCGTTGATATATGTTCAGAACTCTCTGCTCCATTTATACGCCAATTGTGGAGATGTAG 539
|||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 480 GTTCGTTGATCTATGTTCAGAACTCTCTGCTTCATTTATACGCAAATTGTGGAGATGTAG 539
Query 540 CTAGTGCGTACAAGGTGTTTGATAAAATGCCTGAGAAAGATCTT-GTGGCTTGGAACTCT 598
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 540 CTAGTGCGTACAAGGTGTTTGATAAAATGCCTGAGAAAGAT-TTAGTGGCTTGGAACTCT 598
Query 599 GTCATTAATGGGTTTGCAGAAAACGGTAAACCAGAAGAAGCTTTGGCGCTTTATACTGAG 658
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 599 GTGATTAATGGGTTTGCGGAAAACGGTAAACCAGAAGAAGCTTTAGCGCTTTATACTGAG 658
Query 659 ATGGATTTGAAGGGTATCAAGCCTGATGGGTTCACAATCGTAAGCTTGTTGTCTGCTTGT 718
||| ||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 659 ATGAATTCCAAGGGTATCAAGCCTGATGGGTTCACAATTGTTAGCTTGTTGTCTGCTTGT 718
Query 719 GCAAAGATTGGTGCTTTAACATTGGGTAAGAGAGTTCATGTCTATATGATCAAAGTGGGT 778
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 719 GCAAAGATTGGTGCTTTGACATTGGGTAAGAGAGTTCATGTCTATATGATCAAAGTAGGT 778
Query 779 TTGACACGAAACTTGCATTCCAGCAATGTTCTCTTGGATTTGTATGCGAGATGCGGAAGA 838
||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 779 TTGACACGAAACTTGCATTCCAGCAATGTGCTCTTGGACTTGTATGCGAGATGTGGAAGA 838
Query 839 GTCGAAGAAGCCAAAACACTTTTCGATGAAATGGTTGACAAGAACAGTGTCTCGTGGACT 898
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 839 GTGGAAGAAGCCAAAACACTTTTCGATGAAATGGTGGACAAGAACAGTGTCTCGTGGACT 898
Query 899 TCTTTGATAGTTGGTTTAGCTGTTAATGGCCTTGGAAAAGAAGCAATTGAGCTTTTCAAG 958
|| |||||||| ||||||||||||||||| |||| |||||||| |||||||||||||||
Sbjct 899 TCGTTGATAGTCGGTTTAGCTGTTAATGGTTTTGGGAAAGAAGCCATTGAGCTTTTCAAG 958
Query 959 AATATGGAATCAAAGGAGGGATTGTTACCTTGTGAGATCACATTTGTGGGGATCTTATAC 1018
|||||||||||| ||||||||||||||| ||||||||||| ||||| ||||| ||||||
Sbjct 959 TATATGGAATCAACGGAGGGATTGTTACCATGTGAGATCACGTTTGTTGGGATATTATAC 1018
Query 1019 GCATGTAGCCATTGCGGGATGGTGAAGGAAGGTTTTGAGTATTTCAAAAGAATGAGTGAA 1078
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1019 GCTTGTAGCCATTGCGGGATGGTGAAGGAAGGTTTTGAGTATTTCAGGAGAATGAGAGAG 1078
Query 1079 GAGTATAAGATTGAGCCTAGGATTGAACATTTTGGTTGTATGGTCGATTTGTTAGCTAGA 1138
|||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1079 GAGTATAAGATTGAACCTAGGATCGAGCATTTTGGTTGTATGGTCGATTTGTTAGCTAGA 1138
Query 1139 GCTGGGCAAGTGAAGAAAGCCTATGAATACATTCT-GAAAATGCCGATGCAACCCAATGT 1197
||||| |||||||||||||| ||||||||||| | || ||||||||||| || |||||
Sbjct 1139 GCTGGACAAGTGAAGAAAGCATATGAATACAT-CAAGAGTATGCCGATGCAGCCTAATGT 1197
Query 1198 TGTAATCTGGAGAACATTGTTAGGAGCTTGTACTGTTCATGGTGATTCAGATTTAGCAGA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TGTAATCTGGAGAACATTGTTAGGAGCTTGTACTGTTCATGGTGATTCAGATTTAGCAGA 1257
Query 1258 GTTAGCTAGAATTAAGATCTTACAACTAGAACCAAACCACAGCGGTGATTATGTCCTCTT 1317
||| |||||||| ||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1258 GTTTGCTAGAATCCAGATCTTACAACTAGAACCAAACCACAGCGGCGATTATGTTCTCTT 1317
Query 1318 GTCGAATATGTATGCATCCGAGCAGCGTTGGTCTGATGTGCAAAAGATAAGGAAACAAAT 1377
|||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1318 GTCGAATATGTACGCATCCGAGCAGCGTTGGTCCGATGTGCAAAAGATACGGAAACAAAT 1377
Query 1378 GTTAAGAGATGGTGTGAGAAAAGTTCCCGGTCACAGCTTAGTAGAAGTAGGAAACAGAGT 1437
||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1378 GTTAAGAGACGGTGTGAAAAAAGTCCCCGGTCACAGCTTAGTAGAAGTAGGAAACAGAGT 1437
Query 1438 TCACGAGTTTCTCATGGGTGATAAGTCTCATCCACAAAACGA--CATGATTTATGCTAAG 1495
||| |||||||| ||||||||||||||||| ||||||| ||| | | ||||| ||||||
Sbjct 1438 TCATGAGTTTCTTATGGGTGATAAGTCTCACCCACAAAGCGATGC-T-ATTTACGCTAAG 1495
Query 1496 CTGAAAGAAATGACTGATAGATTGAGATTGGAAGGTTACGTGCCGCAGATTTCAAACGTT 1555
|||||||||||||||| ||||||||||| ||||||||||| || || ||||| || ||
Sbjct 1496 CTGAAAGAAATGACTGGTAGATTGAGATCAGAAGGTTACGTTCCACAAATTTCTAATGTC 1555
Query 1556 TATGTAGATGTTGAGGAGGAAGAGAAGGAGAATGCTCTGGTTTACCACAGTGAAAAGATT 1615
|||||||||||||| ||||||||||||||||||||| ||||||| |||||||| ||||||
Sbjct 1556 TATGTAGATGTTGAAGAGGAAGAGAAGGAGAATGCTGTGGTTTATCACAGTGAGAAGATT 1615
Query 1616 GCTATTGCTTTTATGCTTA-TTAGCACACCAGAAAGATGGCCGATT-CGAGTCGTGAAGA 1673
|||||||| |||||| ||| |||| ||||||||||||| |||||| | |||||||||||
Sbjct 1616 GCTATTGCATTTATG-TTAATTAGTACACCAGAAAGATCACCGATTAC-AGTCGTGAAGA 1673
Query 1674 ATCTTA-AGGTCTGTGCAGATTGTCATTTAGCAATCAAACTTGTGTCAAAGGTTTATAAC 1732
|||||| || | |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1674 ATCTTAGAG-TATGTGCAGATTGTCACTTAGCAATCAAACTTGTGTCAAAGGTTTATAAC 1732
Query 1733 CGAGAGATTGTTGTCAGAGATCGTAGCCGGTTTCACCATTTTAAAAACGGCTCTTGTTCT 1792
||||||||||| ||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct 1733 CGAGAGATTGTAGTCAGAGATCGTAGCAGGTTTCACCATTTTAAAAATGGTTCTTGTTCT 1792
Query 1793 TGCCAAGATTACTGGTA 1809
|||||||||||||||||
Sbjct 1793 TGCCAAGATTACTGGTA 1809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89557772280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5