BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492785 Length=974 Score E Sequences producing significant alignments: (Bits) Value AT4G21020.1 | Symbols: | Late embryogenesis abundant protein (... 1384 0.0 > AT4G21020.1 | Symbols: | Late embryogenesis abundant protein (LEA) family protein | chr4:11228187-11229577 FORWARD LENGTH=1062 Length=1062 Score = 1384 bits (749), Expect = 0.0 Identities = 897/967 (93%), Gaps = 15/967 (2%) Strand=Plus/Plus Query 11 GTTTTTCTTGATTTGATGAAAATGGCAGCCATGCAACTAACAAGAACCGCTCTCTTTGGT 70 ||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| Sbjct 56 GTTTTTCTTGATTTGATAAAAATGGCGGCCATGCAACTAACAAGAACCGCTCTAGTTGGT 115 Query 71 CTCTCAAAGGCTTTCCCTGGAATCAAAGCTCCGCCTACTCTCGTTGCTTCTACCCGGAAA 130 ||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| Sbjct 116 CTCTCAAAGGCTTTCCCTGGAATCAAAGCTCCGGCTACTCTCGCTGCTTCTTCCCGGAAA 175 Query 131 GTCTCTCGCGTCTGCTTCGCCTCCTCCGTTAGCCAAAACGAGGGAAGAGATCCTCTAGAT 190 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 176 GTCTCTCGCATCTGCTTCGCCACCTCCGTTAGCCAAAACGAGGGAAGAGATCCTCTAGAT 235 Query 191 AACGCTAGGGACTCGAGGGCTGATTCATCTTACGGGTCAAAGAAATGGAGGGAGGATACC 250 |||||||| |||||||||||||||||| ||||||| || ||||||||||||||||| ||| Sbjct 236 AACGCTAGAGACTCGAGGGCTGATTCAGCTTACGGATCGAAGAAATGGAGGGAGGACACC 295 Query 251 GGCGAAAACTATGCCCAATCAGCTAAAGACAAGGCTAATGAAGGAGCAAGCAAAGCTGCA 310 || ||| ||||||||||| | ||||||||||||||||| ||||||||||||||||||||| Sbjct 296 GGAGAATACTATGCCCAAGCGGCTAAAGACAAGGCTAACGAAGGAGCAAGCAAAGCTGCA 355 Query 311 GATAAAGCCCACGAGACAAAAGAGCAAGCAAAGGATAAAGCCTACGAAACTAAAGAGCAA 370 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 356 GATAAAGCCTACGAGACAAAAGAGCAAGCAAAGGATAAAGCCTACGAAACTAAAGAGAAA 415 Query 371 GCAAAGGATACAGCCTACAATGCAAAAGAGAAGGCCAAGGATTATGCTGAACGGACTAAA 430 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 416 GCAAAGGATACAGCCTACAATGCAAAAGAGAAGGCTAAGGATTATGCTGAACGGACTAAA 475 Query 431 GACAAGGTGAACCAAGGCGCGTCTAAGGCAGCGGATAAAGCGGAAGATACAAAAGAAAGA 490 || ||||||||| |||| |||| ||||||||||||||||||||||||||||||||||| | Sbjct 476 GATAAGGTGAACGAAGGGGCGTATAAGGCAGCGGATAAAGCGGAAGATACAAAAGAAAAA 535 Query 491 GCTAAGGATTACGCAGAAGATACAATGGACAATGCAAAGGAGAAAGCTCGAGATGCGAAA 550 || |||||||||||||| |||||||||||||||||||| |||||||||||| |||| ||| Sbjct 536 GCAAAGGATTACGCAGAGGATACAATGGACAATGCAAAAGAGAAAGCTCGACATGCAAAA 595 Query 551 GAGAAGGTCAAAGAGTATGGAGAAGATACTAAGGAGAGGGCAGAAGGGTTTAAGGAGACT 610 |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 596 GAGAAGGTGAAAGAGTATGGAGAAGATACTAAGGAGAAGGCAGAAGGGTTTAAGGAGACT 655 Query 611 GTGAAGGGTAAAGCTGAGGAACTTGGAGAGAAGACCAAGGAGACGGTGAAAGGAGCTTGG 670 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 GTGAAAGGTAAAGCTGAGGAACTTGGAGAGAAGACCAAGGAGACGGTGAAAGGAGCTTGG 715 Query 671 GAGAGTACGAAAAACGCTGCCCAAACCGTCACTGAAGCTGTTGTTGGGCCTGAAGAGGAT 730 |||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 716 GAGAGTACTAAAAACGCTGCCCAAACCGTCACTGAAGCTGTGGTAGGGCCTGAAGAGGAT 775 Query 731 GCGAAGAAGGCACGGGCTGATATCGA-TAAAGGCGTGGAAGATCATACGAAGAAGAAAAA 789 ||| |||||||||| |||||||| || |||||||||||||||||| | |||||| |||| Sbjct 776 GCGGAGAAGGCACGAGCTGATAT-GAATAAAGGCGTGGAAGATCACAGGAAGAA-AAAA- 832 Query 790 GGCGGAGAGAGATCAAAAAGAGGACGATTTCATAACATTTAACTGATGAGGAAATAAAGT 849 | | |||| ||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 833 G-CAGAGAAAGATCAAAAAGAGGACGATTTCATAACATTTAACTGATGAGGAAAGATA-- 889 Query 850 TGCCTATGCGTTCTGAAATGTTATAACTTT--ATGTAATGCTCTGTTTTCTCTCAGTTTC 907 | ||||||||||||| |||||| |||| ||||| |||||||||| | || |||| Sbjct 890 --CATATGCGTTCTGAAGTGTTATTGCTTTTTATGTATTGCTCTGTTT-C-CT--GTTTA 943 Query 908 TTCTCTGTTTTAAAACTACGCTTGATCTCATGTATGTGACAATGTGAGATGCATTAGTAT 967 |||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||| Sbjct 944 TTCTCTGTTTTAAAACTACGTTTGATCACATGTATGTGACAGTGTGAGATGCATTAGTAT 1003 Query 968 ATAAATA 974 ||||||| Sbjct 1004 ATAAATA 1010 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47672205503 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5