BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492785
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21020.1 | Symbols: | Late embryogenesis abundant protein (... 1384 0.0
> AT4G21020.1 | Symbols: | Late embryogenesis abundant protein
(LEA) family protein | chr4:11228187-11229577 FORWARD LENGTH=1062
Length=1062
Score = 1384 bits (749), Expect = 0.0
Identities = 897/967 (93%), Gaps = 15/967 (2%)
Strand=Plus/Plus
Query 11 GTTTTTCTTGATTTGATGAAAATGGCAGCCATGCAACTAACAAGAACCGCTCTCTTTGGT 70
||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 56 GTTTTTCTTGATTTGATAAAAATGGCGGCCATGCAACTAACAAGAACCGCTCTAGTTGGT 115
Query 71 CTCTCAAAGGCTTTCCCTGGAATCAAAGCTCCGCCTACTCTCGTTGCTTCTACCCGGAAA 130
||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct 116 CTCTCAAAGGCTTTCCCTGGAATCAAAGCTCCGGCTACTCTCGCTGCTTCTTCCCGGAAA 175
Query 131 GTCTCTCGCGTCTGCTTCGCCTCCTCCGTTAGCCAAAACGAGGGAAGAGATCCTCTAGAT 190
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 176 GTCTCTCGCATCTGCTTCGCCACCTCCGTTAGCCAAAACGAGGGAAGAGATCCTCTAGAT 235
Query 191 AACGCTAGGGACTCGAGGGCTGATTCATCTTACGGGTCAAAGAAATGGAGGGAGGATACC 250
|||||||| |||||||||||||||||| ||||||| || ||||||||||||||||| |||
Sbjct 236 AACGCTAGAGACTCGAGGGCTGATTCAGCTTACGGATCGAAGAAATGGAGGGAGGACACC 295
Query 251 GGCGAAAACTATGCCCAATCAGCTAAAGACAAGGCTAATGAAGGAGCAAGCAAAGCTGCA 310
|| ||| ||||||||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct 296 GGAGAATACTATGCCCAAGCGGCTAAAGACAAGGCTAACGAAGGAGCAAGCAAAGCTGCA 355
Query 311 GATAAAGCCCACGAGACAAAAGAGCAAGCAAAGGATAAAGCCTACGAAACTAAAGAGCAA 370
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 356 GATAAAGCCTACGAGACAAAAGAGCAAGCAAAGGATAAAGCCTACGAAACTAAAGAGAAA 415
Query 371 GCAAAGGATACAGCCTACAATGCAAAAGAGAAGGCCAAGGATTATGCTGAACGGACTAAA 430
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 416 GCAAAGGATACAGCCTACAATGCAAAAGAGAAGGCTAAGGATTATGCTGAACGGACTAAA 475
Query 431 GACAAGGTGAACCAAGGCGCGTCTAAGGCAGCGGATAAAGCGGAAGATACAAAAGAAAGA 490
|| ||||||||| |||| |||| ||||||||||||||||||||||||||||||||||| |
Sbjct 476 GATAAGGTGAACGAAGGGGCGTATAAGGCAGCGGATAAAGCGGAAGATACAAAAGAAAAA 535
Query 491 GCTAAGGATTACGCAGAAGATACAATGGACAATGCAAAGGAGAAAGCTCGAGATGCGAAA 550
|| |||||||||||||| |||||||||||||||||||| |||||||||||| |||| |||
Sbjct 536 GCAAAGGATTACGCAGAGGATACAATGGACAATGCAAAAGAGAAAGCTCGACATGCAAAA 595
Query 551 GAGAAGGTCAAAGAGTATGGAGAAGATACTAAGGAGAGGGCAGAAGGGTTTAAGGAGACT 610
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 596 GAGAAGGTGAAAGAGTATGGAGAAGATACTAAGGAGAAGGCAGAAGGGTTTAAGGAGACT 655
Query 611 GTGAAGGGTAAAGCTGAGGAACTTGGAGAGAAGACCAAGGAGACGGTGAAAGGAGCTTGG 670
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GTGAAAGGTAAAGCTGAGGAACTTGGAGAGAAGACCAAGGAGACGGTGAAAGGAGCTTGG 715
Query 671 GAGAGTACGAAAAACGCTGCCCAAACCGTCACTGAAGCTGTTGTTGGGCCTGAAGAGGAT 730
|||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 716 GAGAGTACTAAAAACGCTGCCCAAACCGTCACTGAAGCTGTGGTAGGGCCTGAAGAGGAT 775
Query 731 GCGAAGAAGGCACGGGCTGATATCGA-TAAAGGCGTGGAAGATCATACGAAGAAGAAAAA 789
||| |||||||||| |||||||| || |||||||||||||||||| | |||||| ||||
Sbjct 776 GCGGAGAAGGCACGAGCTGATAT-GAATAAAGGCGTGGAAGATCACAGGAAGAA-AAAA- 832
Query 790 GGCGGAGAGAGATCAAAAAGAGGACGATTTCATAACATTTAACTGATGAGGAAATAAAGT 849
| | |||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 833 G-CAGAGAAAGATCAAAAAGAGGACGATTTCATAACATTTAACTGATGAGGAAAGATA-- 889
Query 850 TGCCTATGCGTTCTGAAATGTTATAACTTT--ATGTAATGCTCTGTTTTCTCTCAGTTTC 907
| ||||||||||||| |||||| |||| ||||| |||||||||| | || ||||
Sbjct 890 --CATATGCGTTCTGAAGTGTTATTGCTTTTTATGTATTGCTCTGTTT-C-CT--GTTTA 943
Query 908 TTCTCTGTTTTAAAACTACGCTTGATCTCATGTATGTGACAATGTGAGATGCATTAGTAT 967
|||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||
Sbjct 944 TTCTCTGTTTTAAAACTACGTTTGATCACATGTATGTGACAGTGTGAGATGCATTAGTAT 1003
Query 968 ATAAATA 974
|||||||
Sbjct 1004 ATAAATA 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47672205503
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5