BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492791
Length=1451
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20960.1 | Symbols: | Cytidine/deoxycytidylate deaminase fa... 2130 0.0
> AT4G20960.1 | Symbols: | Cytidine/deoxycytidylate deaminase
family protein | chr4:11211946-11213644 FORWARD LENGTH=1526
Length=1526
Score = 2130 bits (1153), Expect = 0.0
Identities = 1331/1418 (94%), Gaps = 8/1418 (1%)
Strand=Plus/Plus
Query 1 CACCGTTGTTGTTAGGGTTTCGGCTGTATTCCCGCAGCTGCCG-CTGGAGACGGCCTGAA 59
|||||||| |||||||||||||||||||||| | | ||||| | | |||||||||| |||
Sbjct 17 CACCGTTGATGTTAGGGTTTCGGCTGTATTCTCACCGCTGCTGAC-GGAGACGGCCCGAA 75
Query 60 TCCGCAATTTAATCGTCGATTTTCAATTTTAGTCAAGAACAAGATTCAATAGTGATATGC 119
|||||||||||||| |||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct 76 TCCGCAATTTAATCTTCGAGGTTCGATTTTAGTGAAGAACAAGATTCAATAGTGATATGC 135
Query 120 AGATCACATGTCTCCCAATTTCGATTCCTTCGATCACTCCTCGAACCTCAATTCCACTTT 179
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 136 AGATCTCATGTCTCCCAATTTCGATTCCTTCGATCACTCCTCGAACCTCAATTCCACTCT 195
Query 180 TATCATCACTCTCCTCAAATCATCGCCGTATTTTCAACCTCACTTCACTTCAGAACCCAA 239
|| |||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||
Sbjct 196 TACCATCACTCTCCTCAAATCCTCGCCGCATTTTCAACCTCACTTCACTTCAGAGCCCAA 255
Query 240 ATCACAGTTTCTTCAAAAGATTACATAAATCTCAGACTGGTTTCAACAATCCAGTTTTGG 299
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 256 ATCACTGTTTCTTCAAAAGATTACATAAATCTCAGACTGGTTTCAGCAATCCAGTTTTGG 315
Query 300 CTTCCATGAGAAGAGAAGAAGGTGTTGAAGTCGATGATTCGTTTTATATGAGGAAA-TGC 358
|| |||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||
Sbjct 316 CTGCCATGAGAAGAGAAGAAGATGTTGAAGTCGATGATTCGTTTTATATGA-GAAAGTGT 374
Query 359 GTTGAACTAGCAAAGAGAGCAATTGGGTGTACAAGTCCTAATCCTATGGTAGGTTGTGTC 418
|| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 GTGGAGCTAGCAAAAAGAGCAATTGGGTGTACAAGTCCTAATCCTATGGTAGGTTGTGTC 434
Query 419 ATTGTTAAAGACGGCGACATTGTTGGCCAAGGTTTTCATCCCAAAGCTGGTCAGCCTCAT 478
||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 435 ATTGTCAAAGATGGTGACATTGTTGGCCAAGGGTTTCATCCCAAAGCTGGTCAGCCTCAT 494
Query 479 GCTGAGGTGTTTGCTCTTCGAGATGCTGGAGAGTTAGCTGAGAATGCCACTGCTTATGTT 538
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 495 GCTGAGGTGTTTGCTCTTAGAGATGCTGGAGAGTTAGCTGAGAATGCTACTGCTTATGTT 554
Query 539 AGCTTGGAACCATGTAATCATTACGGGAGAACGCCGCCGTGTACAGAGGCAATGATTAAG 598
|| ||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||||||
Sbjct 555 AGTTTGGAACCATGTAATCATTACGGAAGAACACCGCCGTGTACAGAAGCATTGATTAAG 614
Query 599 GCTAAGGTGAAAAGAGTTG-TAGTCGGGATGGTTGATCCGAATCCAATCGTTTCTTCTTC 657
|||||||||| |||||||| || | ||||||||||||||||||||||| |||| ||||||
Sbjct 615 GCTAAGGTGAGAAGAGTTGTTA-TTGGGATGGTTGATCCGAATCCAATTGTTTTTTCTTC 673
Query 658 AGGTATTAGTCGGTTGAAAGACGCTGGAATTGATGTCACTGTGGGTGTTGAAGAAGAGTT 717
|||||||||||||||||||| |||||||| ||||| |||||| ||||||||||||||||
Sbjct 674 GGGTATTAGTCGGTTGAAAGATGCTGGAATCGATGTTACTGTGAGTGTTGAAGAAGAGTT 733
Query 718 ATGCAAGAAGATGAATGAGGGATTCATCCATCGCATGTTAACAGGGAAGCCTTTCCTTGC 777
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 734 ATGCAAGAAGATGAATGAGGGATTCATCCATCGAATGTTAACAGGGAAGCCTTTTCTCGC 793
Query 778 CCTCAGGTATTCTATGTCTGTCAATGGTTGTTTTCTGGACAAGATTGGGGAAGGGGCTTC 837
||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||
Sbjct 794 CCTCAGGTATTCTATGTCTGTCAATGGTTGTTTGCTAGACAAGATTGGGCAAGGGGCTTC 853
Query 838 GGATAGTGGTGGATACTACTCGAAGCTATTACAGGAATATGATGCGATAATACTTTCATC 897
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 854 GGATAGTGGTGGATACTACTCGAAGCTATTGCAGGAATATGATGCGATAATACTTTCTTC 913
Query 898 CTCGTTATCGGATGAACTCTCGAGTATTTCCTCACAAGAAGCTACTAACGTTTCGATCCA 957
|||||||||||||||||||||||| ||||| ||||||||||||| ||| |||||||||||
Sbjct 914 CTCGTTATCGGATGAACTCTCGAGCATTTCTTCACAAGAAGCTATTAATGTTTCGATCCA 973
Query 958 ACCTATTCAAATCATAGTAGCTAGCAATGCACAACAGTCTCCTATCCTTGCTTCTTCCAA 1017
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 974 ACCTATTCAGATCATAGTAGCTAGCAATGCACAACAGTCTCATATCCTTGCTTCTTCCCA 1033
Query 1018 CACTGCGGAAGAATCGGGTCCAAAAGTTGTACTGTTCACCGCAAAGGAATTGGTTGCAGA 1077
||||| ||||||||||||||||||||||||| | |||||||||||||||| |||||||||
Sbjct 1034 CACTGTGGAAGAATCGGGTCCAAAAGTTGTAGTTTTCACCGCAAAGGAATCGGTTGCAGA 1093
Query 1078 ATCCGGAATCAGTAGTAGCGGGGTTGAAACTGTAGTACTGGAAAAGATAAATTTGGATTC 1137
|||||||||||||||||||||||| ||||| |||||| ||||||||||||| ||||||||
Sbjct 1094 ATCCGGAATCAGTAGTAGCGGGGTCGAAACCGTAGTATTGGAAAAGATAAACTTGGATTC 1153
Query 1138 CATTCTGGATTACTGTTACAACCGTGGACTATGCAGTGTCTTGTTAGATTTGAGGGGGAA 1197
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 CATTTTGGATTATTGTTACAACCGTGGACTATGCAGTGTCTTGTTAGATTTGAGGGGGAA 1213
Query 1198 CGTCAAAGACCTTGAAGTGT-TTCTGAGAGATGGATTTGAACAGAAACTATTGCAGAAAG 1256
|||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||
Sbjct 1214 CGTCAAAGACCTTGAAGT-TCTTCTGAGAGATGGATTTGAGCAGAAACTATTGCAGAAAG 1272
Query 1257 TAATTATTGAGGTTTTGCCGGAATGGAGCACAAAAGATGAGAGACAGATTGCATCGATGA 1316
||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1273 TAATTATTGAGGTCTTGCCGGAATGGAGCACAAAAGATGAGAGACAGATCGCGTCGATGA 1332
Query 1317 AGTGGTTAGAATCAAAACAGGTGAAAGATTTGCAGTCTAAGCAATTAGGTGGAAACGTTT 1376
|||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||
Sbjct 1333 AGTGGTTAGAATCAAAGCATGTGAAAGATTTGCAGTCTAAGCAATTAGGTGGAAGCGTTT 1392
Query 1377 TGCTAGAGGGCTATCTTTGATGTTTTGATGTATGAATG 1414
|||||||||||||| ||||||||||| |||||||||||
Sbjct 1393 TGCTAGAGGGCTATTTTTGATGTTTTCATGTATGAATG 1430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71535776625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5