BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492795
Length=2947
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20910.1 | Symbols: HEN1, CRM2 | double-stranded RNA binding... 4569 0.0
AT4G20920.1 | Symbols: | double-stranded RNA-binding domain (D... 791 0.0
> AT4G20910.1 | Symbols: HEN1, CRM2 | double-stranded RNA binding
protein-related / DsRBD protein-related | chr4:11186084-11190691
REVERSE LENGTH=3125
Length=3125
Score = 4569 bits (2474), Expect = 0.0
Identities = 2804/2960 (95%), Gaps = 35/2960 (1%)
Strand=Plus/Plus
Query 1 ATTTCAGGGATCTGCACATTTTGCATAAAAGTTACC-ATCTTTGCTGATCTTTGACAATA 59
||||||||| | ||||||||||||||||||||| || |||||| |||||| |||||||||
Sbjct 1 ATTTCAGGGGTATGCACATTTTGCATAAAAGTT-CCAATCTTTCCTGATCGTTGACAATA 59
Query 60 GTTATGTGTACCC-TTTGCTTGTCTCAGTGTATTAAAGAAGCTACATTGTGTTTGTGATG 118
|||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 60 TTTATGTGTACCCTTTTGTTTGTCTCAGTGTGTTAAAGAAGCTACATTGTGTTTGTGATG 119
Query 119 GCGGGTGGTGGGAAGCATACTCCTACTCCAAAGGCGATTATACATCAGAAGTTTGGTGCT 178
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GCCGGTGGTGGGAAGCATACTCCTACTCCAAAGGCGATTATACATCAGAAGTTTGGTGCT 179
Query 179 AAAGCAAGCTATAGAGTTGAGGAAGTTCATGACTCTTCTCAGAGTGGTTGTCCAGGTTTA 238
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 180 AAAGCAAGCTATACAGTTGAGGAAGTTCATGACTCTTCTCAGAGTGGTTGTCTAGGATTA 239
Query 239 GCAATACCTCAAAAAGGTCCATGTCTCTATCGCTGCCACTTGCAGCTACCAGACTTTTCT 298
||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 240 GCAATTCCTCAAAAAGGTCCATGTCTCTATCGTTGCCACTTGCAGCTACCTGAATTTTCT 299
Query 299 GTTGTATCAAATGTCTTCAAGAAGAAGAAGGATTCTGAACAATCTGCTGCTGAATTGGCT 358
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTTGTGTCAAATGTCTTCAAGAAGAAGAAGGATTCTGAACAATCTGCTGCTGAATTGGCT 359
Query 359 CTTGACAAGCTAGGCATTCGTCCTCAGAATGATGATCTTACTGTGGATGAAGCTTGGGAT 418
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 360 CTTGACAAGCTAGGCATTCGCCCTCAGAATGATGATCTTACTGTGGATGAAGCTAGGGAT 419
Query 419 GAAATTGTTGGCCGCATTAAGTATATATTTTCTGATGAGTTTCTTTCAGCTGAGCACCCT 478
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 420 GAAATTGTTGGACGCATTAAGTATATATTTTCTGATGAGTTTCTTTCAGCTGAGCATCCT 479
Query 479 CTGGGAGCTCACCTTAGAGCGGCATTGCGAAGAGATGGTGAACGTTGTGGATCAGTTCCT 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTGGGAGCTCACCTTAGAGCGGCATTGCGAAGAGATGGTGAACGTTGTGGATCAGTTCCC 539
Query 539 GTTTCTGTCATTGCTACATTTGATGCAAAGATTAACAGTCGTTGTAAAATTATCGATCCT 598
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 540 GTTTCTGTCATTGCTACAGTTGATGCAAAGATTAACAGTCGTTGTAAAATTATCAATCCT 599
Query 599 TCTGTGGAATCAGATCCTTTCTTGGCCATTTCCTATGTCATGAAGGCTTCTGCAAAGTTG 658
|||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 600 TCTGTGGAGTCAGATCCTTTCTTGGCCATTTCCTATGTTATGAAGGCTGCTGCAAAGTTG 659
Query 659 TCAGACTACATTGTTGCATCTCCGCATGCACTCCGAAGGAAAAATGCATACCCTTCAGAA 718
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 660 GCAGACTACATTGTTGCATCTCCGCATGGACTCCGAAGGAAAAATGCATACCCTTCAGAA 719
Query 719 ATTGTAGAAGCACTAGCTACTCATGTATCTGATTCCCTACATAGAAGAGAAGTCGCGGCT 778
|| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 720 ATCGTGGAAGCACTAGCTACTCATGTATCTGATTCCCTACATAGCAGAGAAGTCGCGGCT 779
Query 779 GTATATATACCATGTATCGATGAGGAGGTTGTTGAGCTAGATACTCTTTACATTTCATCA 838
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 780 GTATATATACCATGTATCGATGAGGAAGTTGTTGAGTTAGATACTCTTTACATTTCATCA 839
Query 839 GACCGGCATTACTTGGATAGTATTGCTGAAAGGCTCGGATTGAAAGATGGCAGCCAAGTG 898
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 840 AACCGGCATTACTTGGATAGTATTGCTGAAAGGCTCGGATTGAAAGATGGCAACCAAGTG 899
Query 899 ATGATATCCAGCAGGACT-TTTGGAAAAGCATCCTGTGGTTCTGAGTGTAGATTGTACTC 957
||||||| | ||||| | ||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 900 ATGATAT-C--CAGGA-TGTTTGGCAAAGCTTCCTGTGGCTCTGAGTGTAGATTGTACTC 955
Query 958 TGATATTCCGAAGAAGTCCTCT-GATAATTCATCAGAAGCCTCTGGAAGTTCAAATGAAG 1016
||| ||||| ||||||| || | |||||||||||||| |||||||| | |||||||||||
Sbjct 956 TGAGATTCCAAAGAAGTACT-TGGATAATTCATCAGATGCCTCTGGTACTTCAAATGAAG 1014
Query 1017 ACTCATCTCATATTAAAAAATCTCGGAATGCACGAGCAAGTTACATTTGTGGTCAAGATA 1076
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 ACTCATCTCATATTGTAAAATCTCGGAATGCACGAGCAAGTTACATTTGTGGTCAAGATA 1074
Query 1077 TTCACGGGGATGCAATCTTGGCATCTGTTGGTTACCGATGGAAGTCCGACGATCTTGACT 1136
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1075 TTCACGGGGATGCAATCTTGGCATCTGTTGGTTACCGATGGAAGTCCGATGATCTTGACT 1134
Query 1137 ATGATGATGTAACTGTAAATTCATTTTACAGAATATGTTGCGGTATGTCACCCAATGGAA 1196
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 ATGATGATGTAACCGTAAATTCATTTTACAGAATATGTTGCGGTATGTCACCCAATGGAA 1194
Query 1197 TCTACAAAATTTCCCGACAAGCAGTAATTGCTGCACAGTTGCCTTTTTCATTCACTACAA 1256
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1195 TCTACAAAATTTCCCGACAAGCTGTAATTGCTGCACAGTTGCCTTTTGCATTCACTACAA 1254
Query 1257 AATCTAATTGGAGAGGTCCACTCCCCAGGGAGATTCTCTGCCTGTTCTGCCACCAGCACC 1316
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1255 AATCTAATTGGAGAGGTCCACTCCCCAGGGAGATTCTCGGCCTGTTCTGCCACCAGCACC 1314
Query 1317 GACTAGCAGAACCCATCATTTCTTCATCTACTGCTCCTGTGAAATCGTTGTCTGACATAT 1376
||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1315 GACTAGCAGAACCCATCCTTTCTTCATCTACTGCACCTGTGAAATCGTTGTCCGACATAT 1374
Query 1377 TCAGATCTCAAAAGAAGTTGAAGGTCTCAGGAGTTGATGATGCCAATGAGAATTTGAGTA 1436
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 TCAGATCTCACAAGAAGTTGAAGGTCTCAGGAGTTGATGATGCCAATGAGAATTTGAGTA 1434
Query 1437 GGGAAAAAGAAGATACACCAGGACTAGGGCATGGGTTTAGATGTGAAGTGAAAATCTTTA 1496
|| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1435 GGCAAAAAGAAGATACACCAGGACTAGGGCATGGGTTTAGATGTGAAGTGAAGATTTTTA 1494
Query 1497 CAAAGTCTCAGGATTTGGTTTTAGAATGTTCACCGAGAAAATTCTATGAGAAGGAAAATG 1556
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 CAAAGTCTCAGGATTTAGTTTTAGAATGTTCACCGAGAAAATTCTATGAGAAGGAAAATG 1554
Query 1557 ATGCCATTCAAAATGCTTCATTGAGAG-CCCTCTTATGGTTTAGTAAGTTTTTCGCTGAC 1615
|||||||||||||||||||||| | || ||||||||||||||||||||||||| ||||||
Sbjct 1555 ATGCCATTCAAAATGCTTCATTAA-AGGCCCTCTTATGGTTTAGTAAGTTTTTTGCTGAC 1613
Query 1616 CTGGATGTGGATGGAGAACAACCATGTGATACAGATGACGACCAGGATATTAAATCT-CG 1674
||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| |
Sbjct 1614 CTGGATGTGGATGGAGAGCAATCATGTGATACAGATGACGACCAGGATACTAAATCTTC- 1672
Query 1675 AAGTCCTAATGTTTTTGCGGCCCCACCGATTTCCCAAAATGAACACAGTTCTGAATCAAA 1734
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1673 AAGTCCTAATGTTTTTGCGGCCCCACCGATTTTACAAAAGGAACACAGTTCTGAATCAAA 1732
Query 1735 AACCACGAATGTGCTATCGGCAGAGAAGCGTGTTCAATCTATAACAAACGGTTCCGTGGT 1794
|| ||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1733 AAACACAAATGTGCTGTCGGCAGAGAAGCGTGTTCAATCTATAACAAATGGTTCCGTGGT 1792
Query 1795 TAGCATATGCTATTCTTTGTCTTTGGCAGTGGATTCTGAAGATTCGAGTGATGGTGAATC 1854
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1793 TAGCATATGCTATTCTTTGTCTTTGGCAGTGGATCCTGAATATTCGAGTGATGGTGAATC 1852
Query 1855 TCCAAGAGAAGACATTGAAAGCAATGAAGATATGGAGTCTGAGGTGGATGCTGAATATTC 1914
|||||||||||||| ||||||||||||||| ||||||||||| || | | | |
Sbjct 1853 TCCAAGAGAAGACAATGAAAGCAATGAAGAGATGGAGTCTGA-----AT----A-T-T-C 1900
Query 1915 GGCTAATTGTGAACCCTCAATAGATCTCATTGAAAGCAATGAAGAGATAGAGTTTGAGGT 1974
||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1901 GGCTAATTGTGAATCCTCAGTAGAGCTCATTGAAAGCAATGAAGAGATAGAGTTTGAGGT 1960
Query 1975 AGGAACTGGATCCATGAATCCACATATTGAATCAGCTGTTACTCAGATGACTGTGGGTGA 2034
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1961 AGGGACTGGATCCATGAATCCACATATTGAATCAGAAGTTACTCAGATGACTGTGGGTGA 2020
Query 2035 ATATTCTTCTTTTAGTATTAcccccccTGATGCTGCTGAAGCTTTGATTTTGGCTGTTGC 2094
|||| |||| ||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 2021 ATATGCTTCATTTAGGATGACACCCCCTGATGCTGCTGAAGCTTTGATTTTGGCTGTTGG 2080
Query 2095 TTCTGATACTGTGAGAACCCGCTCGCTTCTATCAGAACGTCCAAGTTTAAATTACAGTAT 2154
||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||| |||
Sbjct 2081 TTCTGATACTGTGAGAATCCGCTCGCTCCTATCAGAACGTCCATGTTTAAATTACAATAT 2140
Query 2155 ACTTTTGTTGGGAGTGAAAGGGCCATCAGAAGAACGAATGGAGGCGGCTTTTTTCAAACC 2214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2141 ACTTTTGTTGGGAGTGAAAGGGCCATCAGAAGAACGAATGGAGGCGGCTTTTTTCAAACC 2200
Query 2215 TCCACTTTCTAAACAGCGTGTTGAATATGCACTGAAACATATAAGAGAATCATCCGCTTC 2274
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2201 TCCACTTTCAAAACAACGTGTTGAATATGCACTGAAACATATAAGAGAATCATCCGCTTC 2260
Query 2275 TACCTTGGTTGACTTTGGATGCGGATCTGGAAGTTTATTAGACTCTCTACTTGACTATCC 2334
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2261 TACTTTGGTTGACTTTGGATGCGGATCTGGAAGTTTATTAGACTCTCTACTTGACTATCC 2320
Query 2335 AACTTCACTTCAAACCATCATCGGTGTTGACATTTCGCCGAAGGGTCTTGCCCGTGCTGC 2394
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2321 AACTTCACTTCAAACCATCATCGGTGTTGACATTTCGCCAAAGGGTCTTGCCCGTGCTGC 2380
Query 2395 TAAGATGCTACATATAAAACTAAACAAGGAAGCTTGCAACGTCAAATCTGCTACACTTTA 2454
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2381 TAAGATGCTACATGTAAAACTAAACAAGGAAGCTTGCAACGTCAAATCTGCTACACTTTA 2440
Query 2455 TGATGGTTCCATCCTTGAGTTTGACTCCAGGCTGCATGACGTTGACATCGGCACTTGCTT 2514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2441 TGATGGTTCCATCCTTGAGTTTGACTCCAGGCTGCATGACGTTGACATCGGCACTTGCTT 2500
Query 2515 AGAGGTTATTGAACACATGGAAGAAGATCAAGCCTGTGAATTCGGGGAAAAAGTTCTTAG 2574
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 2501 AGAGGTTATTGAACACATGGAAGAAGATCAAGCCTGTGAATTTGGGGAAAAAGTTCTGAG 2560
Query 2575 CTTGTTCCACCCCAAGCTCCTGATTGTCTCAACACCAAACTACGAGTTCAACACAATTCT 2634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2561 CTTGTTCCACCCCAAGCTCCTGATTGTCTCAACACCAAACTACGAGTTCAACACAATTCT 2620
Query 2635 CCAACGTTCTACATCAGAAACACAAGAAGAAAACAACTCCGG-GTCACAGCTTCCAAAAT 2693
||| || |||||| ||||||| ||||||||||||||||| || | ||||||||||||| |
Sbjct 2621 CCAGCGGTCTACACCAGAAACCCAAGAAGAAAACAACTC-GGAGCCACAGCTTCCAAAGT 2679
Query 2694 TCAGGAACCATGACCACAAATTTGAATGGACAAGAGAACAGTTTAA-CAACTGGGCCTCT 2752
|||||||||||||||||||||| || ||||||||||||||||| || ||| ||||| ||
Sbjct 2680 TCAGGAACCATGACCACAAATTCGAGTGGACAAGAGAACAGTTCAATCAA-TGGGCATCA 2738
Query 2753 AATCTCGCCAAACGCCATAACTACGGTGTCGAGTTTAGCGGTGTTGGTGGGTCTGGTGAA 2812
|| |||| |||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 2739 AAGCTCGGCAAACGCCATAACTACAGCGTCGAGTTTAGCGGTGTTGGTGGGTCTGGTGAA 2798
Query 2813 GTAGAACCCGGGTTTGCTTCTCAGATAGCTGTTTTTAAACGGGAAGCTTCATCTGTTGAG 2872
||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 2799 GTAGAACCCGGATTTGCTTCTCAGATAGCTATTTTTAGACGGGAAGCTTCATCTGTTGAG 2858
Query 2873 AATGTTGCAGAAAGCTCAATGCAGCGTTATAAAGTCATATGGGAATGGAAGAAAGATG-- 2930
||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||| |
Sbjct 2859 AATGTTGCAGAAAGCTCAATGCAGCCTTATAAAGTCATCTGGGAGTGGAAGAAAGAAGAT 2918
Query 2931 G-AGATAA-AAAA-GACTGA 2947
| ||| || |||| ||||||
Sbjct 2919 GTAGAAAAGAAAAAGACTGA 2938
> AT4G20920.1 | Symbols: | double-stranded RNA-binding domain
(DsRBD)-containing protein | chr4:11193597-11197577 REVERSE
LENGTH=2734
Length=2734
Score = 791 bits (428), Expect = 0.0
Identities = 856/1051 (81%), Gaps = 75/1051 (7%)
Strand=Plus/Plus
Query 1936 AGATCTCATTGAAAGCAATGAAGAGATAGAGTTTGAGGTAGG-AACTGGATCCATGAATC 1994
||| ||||| ||||||||||||||||||||||||||||| || || ||| || |||||||
Sbjct 1716 AGAACTCATCGAAAGCAATGAAGAGATAGAGTTTGAGGTGGGGAA-TGGTTCTATGAATC 1774
Query 1995 CACATATTGAATCAGCTGTTACTCAGA-TGACTGTGGGTGAATATTCTTCTTTTAGTATT 2053
||||| ||||| ||| ||||||||| | || |||||| ||||| || | ||| | ||
Sbjct 1775 CACATCTTGAAGCAGTTGTTACTCA-ACTGGTTGTGGGCCAATATGCT-CGTTT--T-TT 1829
Query 2054 AcccccccTGATGC-TGCTGAAG-CTTTGATTT-TGGCTGTTGCTTCTGATACTGTGAGA 2110
| | || || |||||||| ||| | ||| || ||| ||| ||| ||| ||||
Sbjct 1830 AACTAA--TGC-GCCTGCTGAAGACTT-G-TTTGTGACTGCTGCCACTGGTACCCAGAGA 1884
Query 2111 -ACCCGCTCGCTTCTATCAGAACGTC-CAAGTTTA-AATTACAGTATACTTTTGTTGGGA 2167
| | | || ||| ||||||| ||| || |||| ||| || || ||| ||||||||||
Sbjct 1885 GATC-GTTCACTTTTATCAGAT-GTCGCAGGTTTTGAAT-ACTGTGTACGTTTGTTGGGA 1941
Query 2168 GTGAAAGGGCCATCAGAAGAACGAATGGAGGCGGCTTTTTTCAAACCTCCACTTTCTAAA 2227
|||||||||||| ||||| ||||||| ||||||| ||||||||||||| ||||||| |||
Sbjct 1942 GTGAAAGGGCCAACAGAAAAACGAATTGAGGCGGATTTTTTCAAACCTTCACTTTCAAAA 2001
Query 2228 CAGCGTGTTGAATATGCACTGAAACATAT-AAGAGAATCATCCGCTTCTAC-CTTGGTTG 2285
|||||| ||||||||| | |||||||||| || |||||| || |||||||| || |||||
Sbjct 2002 CAGCGTCTTGAATATGTAGTGAAACATATTAA-AGAATCGTCAGCTTCTACTCT-GGTTG 2059
Query 2286 ACTTTGGATGCGGATCTGGAAGTTTATTAG-ACTCTCTACTTGACTATCCAACTTCACTT 2344
| |||||||| ||||||||||||||| ||| | ||| ||||||||| |||||||||||||
Sbjct 2060 ATTTTGGATGTGGATCTGGAAGTTTACTAGCA-TCTATACTTGACTGTCCAACTTCACTT 2118
Query 2345 CAAACCAT--CATCGGTGTTGACATTTCGCCGAAGGGTCTTGCCCGTGCTGCTAAGAT-G 2401
|||||||| | | || |||||||| || | ||| ||||| |||||||||||||||| |
Sbjct 2119 CAAACCATTGC-T-GGCGTTGACATCTCACATAAGAGTCTTACCCGTGCTGCTAAGATTG 2176
Query 2402 CTACATAT-AAAACTAAACAAGGAAGCTTGCAACGTCAAATCTGCTACACTTTATGATGG 2460
|||||| | |||| ||||||||| |||||||||| |||||||| || ||| |||||||
Sbjct 2177 CTACAT-TCAAAAATAAACAAGGGAGCTTGCAACCTCAAATCTACTTTACTCCATGATGG 2235
Query 2461 TTCCATCCTTGAGTTTGACTCCAGGCTGCATGACGTTGACATCGGCACTTGCTTAGAGGT 2520
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 2236 TTCCATCCTTGAGTTTGATTCCAGGCTGCATGACATTGACATCGGCACTTGCTTAGAGGT 2295
Query 2521 TATTGAACACATGGAAGAAGATCAAGCCTGTGAATTCGGGGAAAA-AGTTCTTAGCTTGT 2579
|||||||||||||| || ||||||||| || |||||||| |||| |||||| |||||||
Sbjct 2296 CATTGAACACATGGAGGAGGATCAAGCCAGTCAATTCGGG-AAAACAGTTCTAAGCTTGT 2354
Query 2580 TCCACCCCAAGCTCCTGATTGTCTCAACACCAAAC-TACGAGTTCAACACAA-TTCTCCA 2637
| | ||| || || ||||||||||| ||||||||| | ||||| |||||||| || ||||
Sbjct 2355 TTCGCCCGAAACTTCTGATTGTCTCCACACCAAACAT-CGAGTACAACACAAATT-TCCA 2412
Query 2638 -ACGT-TC-TACATCAGAAAC-ACAAGAAGAAAACA-ACTCCGGGTC---ACAGCTTCCA 2689
| || | | | || |||| || || |||||| | ||| ||| |||||| |||
Sbjct 2413 TAAGTCTGGTCC-TCC-AAACCACCC-AA-AAAACAGA-TCCATGTCTTCACAGCTACCA 2467
Query 2690 AAATTCAGGAACCATGACCACAAATTTGAATGGACAAGAGAA-CAGTTTAA-CAACTGGG 2747
|||||||||||||| |||||||| |||||||||||||| ||| |||||||| || ||||
Sbjct 2468 AAATTCAGGAACCAAGACCACAAGTTTGAATGGACAAG-GAAACAGTTTAAGCAG-TGGG 2525
Query 2748 CCTCTAATCTCGCCAAACGCCATAACTACGGTGTCGAGTTTAGCGGTGTTGGTGGGTCTG 2807
| ||||| ||||| |||||||| |||||| | ||| | ||||||||||||||||||||||
Sbjct 2526 CATCTAAACTCGCTAAACGCCACAACTACAGCGTCTATTTTAGCGGTGTTGGTGGGTCTG 2585
Query 2808 GTGAAGTAGAACCCGGGTTTGCTTCTCAGATAGCTGTTTTTAAACGGGA-AGCTT---C- 2862
|| ||| ||| ||||||||||||||||| || | |||||||| |||| | | ||| |
Sbjct 2586 GTAAAGGAGACCCCGGGTTTGCTTCTCAAATTGTTGTTTTTAGACGG-ATATCTTTGTCC 2644
Query 2863 ATC-T-GTTGAGAATGT-TGCAGAAAGCTCAATGCAGCGTTATAAAGTCATATGGGAATG 2919
| | | || ||||| || | ||||| |||| ||||||| ||||||| |||||||| ||||
Sbjct 2645 AACATAGTGGAGAAGGTCT-CAGAAGGCTCGATGCAGCCTTATAAAATCATATGGAAATG 2703
Query 2920 G--AA-GA--AAGATGGAGATAAAAAAGACT 2945
| || || || ||||||| ||||| ||||
Sbjct 2704 GTCAAAGAGGAA-ATGGAGAGAAAAA-GACT 2732
Score = 675 bits (365), Expect = 0.0
Identities = 730/896 (81%), Gaps = 65/896 (7%)
Strand=Plus/Plus
Query 263 CTCTATCGCTGCCACTTGCAGCTACCAGACTTTTCTGTTGTATCAAATGTCTTCAAGAAG 322
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 112 CTCTATCGTTGCCACTTGCAGCTACCAGAATTTTCTGTTGTATCAAATGTCTTCAAG-AG 170
Query 323 -AAGAAGGATTCTGAACAATCTGCTGCTGAATTGGCTCTTGACAAGCTAGGCATTC-GTC 380
|| |||||||| |||||||||||||||||||||||||| || |||||||| |||| ||
Sbjct 171 AAAAAAGGATTCCGAACAATCTGCTGCTGAATTGGCTCTCGAGAAGCTAGGAATTCAGT- 229
Query 381 CTCA-GA--ATGATGA---T-CT-T-ACTGTGGATGAAGCTTGGGATGAA-ATTGTTGGC 430
|||| || ||||||| | | | |||||||||||||||||| || || || ||||
Sbjct 230 CTCAGGATGATGATGATGTTGATATAACTGTGGATGAAGCTTGGAAT-AATATCGTTGAA 288
Query 431 CGCATTAAGTATATATTTTCTGATGAGTTTCTTTCAGCTGAGCACCCTCTGGGAGCTCAC 490
||||||||||||||||||||||||||||||||||||| ||| || ||||| |||| ||||
Sbjct 289 CGCATTAAGTATATATTTTCTGATGAGTTTCTTTCAGTTGATCATCCTCTAGGAGGTCAC 348
Query 491 CTTAGAGCGGCATTGCGAAGAGATGGTGAACGTTGTGGATCAGTTCCTGTTTCTGTCATT 550
|| || |||||||||| ||| ||||| |||||||| |||||| |||||||||||||||||
Sbjct 349 CTAAGGGCGGCATTGCAAAGGGATGGCGAACGTTGCGGATCACTTCCTGTTTCTGTCATT 408
Query 551 GCTACATTTGATGCAAAGATTAACAGTCGTTGTAAAATTATCGATCCTTCTGTGGAATCA 610
||||||||||||||||||||||||||||| |||||| | || ||||||||||| ||||||
Sbjct 409 GCTACATTTGATGCAAAGATTAACAGTCGCTGTAAAGTGATTGATCCTTCTGTAGAATCA 468
Query 611 GATCCTTTCTTGGC-CATTTCCTATGTCATGAAGGCTTCTGCAAAGTTGTCAGACTACAT 669
|||||| ||||| | ||| |||||||||||||||||| ||||||||||| | ||||||||
Sbjct 469 GATCCTATCTTG-CTCATGTCCTATGTCATGAAGGCTGCTGCAAAGTTGCCGGACTACAT 527
Query 670 TGTTGCATCTCCGCATG-C-A--C--TCCGAAGGAAAAATGCATACCCTTCAGAAATTGT 723
||||| ||||||||||| | | | ||||||||||||| | || ||| ||| || | |
Sbjct 528 TGTTGTATCTCCGCATGTCGATTCACTCCGAAGGAAAAAACCGTATCCTCCAGCAACTAT 587
Query 724 -AGAAGCACTAGCTACT-CATGTATCTGATTCCCTACATAGAAGAGAAGTCGCGGCTGTA 781
| ||||||| |||||| | | || ||| | | || || || | | ||||||
Sbjct 588 TA-AAGCACTGGCTACTAC-TC-ATGTGAAAAGC-A--TA-AA-AGC--T-GAGGCTGTG 636
Query 782 TATATACCATGTA---T---CGATGAGGAGGTTGTTGAGCTAGAT-ACTCTTTACATTTC 834
|| ||| ||||| | || ||| ||||||||| ||| || | |||||| | |||||
Sbjct 637 CATTTACAATGTACCGTTGGCGGTGAAGAGGTTGTTAAGCCAG-TCACTCTTGATATTTC 695
Query 835 ATCAGACCGGCATTACTTGGATAGTATTGCTGA-AAGGCTCGGATTGAAAGATGGCAGCC 893
||||| ||| |||||||||||| ||||||||| ||| || |||||||| ||||||||||
Sbjct 696 ATCAGGTCGGTATTACTTGGATATTATTGCTGACAAG-CTTGGATTGAAGGATGGCAGCC 754
Query 894 AAGTGATGATATCCAGCAGGACTTTTGG-AAAAGCATCCTGTGGTTCTGAGTGTAGATTG 952
||||||||||||| | |||||| |||| |||| | |||| ||| | |||||||||| |
Sbjct 755 AAGTGATGATATC-A--AGGACTATTGGCAAAA-CTTCCTCTGGCTATGAGTGTAGAGTA 810
Query 953 TACT-CTGATATTCCGAAG---AAGTCCTCTGATAATTCATCAGAA-GCCTC-TGGAA-- 1004
|| | ||| ||||| ||| ||||| || |||||||||| ||| ||| | || ||
Sbjct 811 TA-TGCTGCCATTCCTAAGTTGAAGTCTTCCGATAATTCATG-GAAAGCC-CGTGAAAAA 867
Query 1005 -GTTCAAATGAA-GACTCATCTCATATTAAAAAATCTCGGAATGCACGAGCAAGTTACAT 1062
|| ||| | | || ||||| ||| || |||| |||||||||||| |||||||| |
Sbjct 868 CGTCCAA-TCATTGAATCATCACATCTTGAAAAGTCTCGGAATGCAAAAGCAAGTTTTGT 926
Query 1063 TTGTGGTCAAGATATTCACGGGGATGCAATCTTGGCATCTGTTGGTTACCGATGGA 1118
||||||| |||||||||||| ||||| ||| |||||||||||||||||| |||||
Sbjct 927 TTGTGGTGTAGATATTCACGGTGATGCGATCGTGGCATCTGTTGGTTACCCATGGA 982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 146487473560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5