BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492798
Length=1439
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20880.1 | Symbols: | ethylene-responsive nuclear protein /... 1605 0.0
> AT4G20880.1 | Symbols: | ethylene-responsive nuclear protein
/ ethylene-regulated nuclear protein (ERT2) | chr4:11179115-11180799
REVERSE LENGTH=1685
Length=1685
Score = 1605 bits (869), Expect = 0.0
Identities = 1162/1295 (90%), Gaps = 54/1295 (4%)
Strand=Plus/Plus
Query 127 ATCCtttttt-tttctttttCTTCGCCATGCCTTTACCTTGGAAGAAATCGAAATCTAGT 185
|||||||||| |||| ||| |||| |||||||||||||||||||||||| |||||||||
Sbjct 168 ATCCTTTTTTCTTTC-TTTCCTTCAACATGCCTTTACCTTGGAAGAAATCTAAATCTAGT 226
Query 186 CGGATCTCTAGATTCGTATCAGACCTTCAACAATCTCCTAAACATGGTGGATCTCTCGTT 245
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 227 CGGATCTCTAGATTCGTATCAGACTTTCAACAATCTCCTAAACATGGTGGATCTCTCGTT 286
Query 246 GTTGAAACTGGATTCCCAACTTCTTTAATCGATCTCTTCGTTAAGAATCGCGATCGTCTC 305
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 287 GTTGAAACTGGTTTCCCAACTTCTTTAATCGATCTCTTTGTTAAGAATCGCGATCGTCTC 346
Query 306 AAGAAACAATCTTCAAAACGTAACAACAAGAACAACAAAGCCCAGACGACGGCTCAGACT 365
|| ||||||||||||||||||||||||||||||||| | | | | | | |||
Sbjct 347 AAAAAACAATCTTCAAAACGTAACAACAAGAACAAC--A----A-A-G-C--C-CAG--- 391
Query 366 CAAACCGCTCCGACAAAACGGCGTGTTTTGTCTCCGCCTCCTCCTCCTCTGTCTTTGCAG 425
| || | |||| ||||||||||||||| |||||||||| | |||||||||||
Sbjct 392 ---A---CT--G---AAAC-GCGTGTTTTGTCTCCACCTCCTCCTCATATGTCTTTGCAG 439
Query 426 CGTCGTATGTCTCTTCCTTCGAAGCTTGATCCAGCTTTGGTTACAGAGGATCCTCCTTTG 485
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 440 CGTCGTATGTCTCTTCCTTCCAAGCTTGATCCAGCTTTGGTTACAGAGGATTCTCCTTTG 499
Query 486 GTGAGTAAGATCGAGGAAAGTTTTATTCCGGAGAATAGACATGACGGCGAAGACGACGGT 545
||||| ||||||||||||| || | |||||||| || || | | | || |||
Sbjct 500 GTGAGAAAGATCGAGGAAACTTCTGTTCCGGAG-AT---TAT--C--C-ATGAAGAC--- 547
Query 546 GGAAACGGTGGTAATCGCGGCGGAGGAGGAGGAGGGTGTGTTTTAATGGTGGTGGTGTTT 605
| |||||||| ||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 548 -G--ACGGTGGTCATCGCGGTGGAGGAGGAGGAGGGTGTGTTTTGATAGTGGTGGTGTTT 604
Query 606 AAGGTTTTTATGGTGGCGGTGCTCGCGTTGAGCACGAAGAAGCTCGCCGTGGGGATCACG 665
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 605 AAGGTTTTTATGGTGGCTGTGCTTGCCTTGAGCACGAAGAAGCTCGCCGTGGGGATCACG 664
Query 666 CTCTCCGCTTTTTCCCTTCTCTTCCTCGAGCTCGCGGTGGCGCGTGTCTTCACGTACCTG 725
||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 665 CTCTCTGCTTTTGCCCTTCTCTTCCTCGAGCTTGCGGTGGCGCGTGTCTTCACGTACTTG 724
Query 726 AATCTCTGTCCAGACGCGCAGATTCGGATAGATTCGTTGATCGATAAACTCATAGGGAAG 785
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 725 AATCTCTGTCCCGACGCGCAGATTCGGATAGATTCTTTGATCGATAAGCTCATAGGGAAG 784
Query 786 CGACATAaagagaagctagaagaagaagaagaaTCGTTATCAACGCCTGACAGAAGAAAC 845
||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||
Sbjct 785 CGACATAAAGAGAAGCTAGAAGAAGAAGAAGAATCAACATCGACGCATGACAGAAGAAAC 844
Query 846 AATGTCT-CGTCTGAAATCATCGAAGAACCTAGAGAGGAAATTAGAGTCGTTCCTCAATC 904
||||||| | | ||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 845 AATGTCTAC-TTTGAAATCATCGAAGAACCTAGAGAGGAGATTAGAGTCACTCCTCAATC 903
Query 905 GGATTCGTCCACATTGAAGAAGGCTAAACCTGTGGTGGAGGAGAAGAAGGACGTGCAAAC 964
||||||||| ||||| ||||||| |||| ||||||||| |||||||| || |||| ||
Sbjct 904 GGATTCGTCGTCATTGGAGAAGGCGAAACTTGTGGTGGATGAGAAGAAAGAAATGCAGAC 963
Query 965 GATAAGAGATGTTGTGTTTAAGACTGAGAAAAGCAAAAGCGCGAAGCTGAAATCAaagat 1024
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 GATAAGAGATGTTATGTTTAAGACTGAGAAAAGCAAAAGCGCGAAGCTGAAATCAAAGAT 1023
Query 1025 tgtgaagaagattgttccaaagaagttgaggagttataagaagaagaagaagatgaagat 1084
||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1024 TGTGAAGAAGATTGTGCCAAAGAAGCTAAGGAGTTATAAGAAGAAGAAGAAGATGAAGAA 1083
Query 1085 caaagaaaaagaagaagaagaagctgaagttgaaactgaagaagaagGGTCTGTGACAGA 1144
||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||
Sbjct 1084 CAAAGAAAAAGAAGAAGAAGAAGTTGAACTTGAAACTGAAGAAGAAGGGTCTATGACAGA 1143
Query 1145 AGTATCAAGCTTGTTTTCAGATGAGAGAATCGGAAGCGAAATCTCTGAGAGAGATGATTT 1204
||| || ||||||| |||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1144 AGTTTCTAGCTTGTATTCAGATGAGAGAATCGGGAGTGAAATCTCTGAGAGGGATGATTT 1203
Query 1205 AAGTTCGAATCCGCCATTGTTAGAGAGTTGTACAGAGATTGATgaagaagaagaagaaga 1264
||||||||||||||||| |||||||||||||||||| |||| | ||||||||||| ||
Sbjct 1204 GAGTTCGAATCCGCCATTTTTAGAGAGTTGTACAGAGGTTGA--A-GAAGAAGAAGA-GA 1259
Query 1265 aATTGGACCAAAAGGGGATCTAACGAAAGCGAT-GGTTCTGATAGTGATTGTTCTTGTTG 1323
| |||||||||| |||||||||||||| ||| |||| |||||||||||||||||||||
Sbjct 1260 C-T-GGACCAAAAGAGGATCTAACGAAAGTGATTGGTT-TGATAGTGATTGTTCTTGTTG 1316
Query 1324 GATTGTTAAGTGGGAAAGTTTTTGCTATTGGTCTGACACTCTCTTGGTGTCTGATTCTCA 1383
||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GATTGCTGTGTGGGAAAGTCTTTGCTATTGGTCTGACACTCTCTTGGTGTCTGATTCTCA 1376
Query 1384 GAGTTTTCTGCTGCAAATCTCAAACCAGTCTCTGA 1418
|||||||||| |||||||||||||||||| |||||
Sbjct 1377 GAGTTTTCTGTTGCAAATCTCAAACCAGTTTCTGA 1411
Score = 226 bits (122), Expect = 5e-58
Identities = 127/129 (98%), Gaps = 2/129 (2%)
Strand=Plus/Plus
Query 1 TTCTTCTCCATTTATTGCATTT-TCTCTCC-AAATGTCTAATTAATGGTTTTGATCTTCC 58
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 13 TTCTTCTCCATTTATTGCATTTGTCTCTCCAAAATGTCTAATTAATGGTTTTGATCTTCC 72
Query 59 AACCAGATCTTCTTCTCTATCTCTTCGACAAACCCTTTTTTCTGGGTTCTTCGGAGAGGT 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 AACCAGATCTTCTTCTCTATCTCTTCGACAAACCCTTTTTTCTGGGTTCTTCGGAGAGGT 132
Query 119 GATTTATCA 127
|||||||||
Sbjct 133 GATTTATCA 141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70933370085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5