BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492802
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20840.1 | Symbols: | FAD-binding Berberine family protein ... 2449 0.0
AT4G20830.1 | Symbols: | FAD-binding Berberine family protein ... 1923 0.0
> AT4G20840.1 | Symbols: | FAD-binding Berberine family protein
| chr4:11157916-11159535 FORWARD LENGTH=1620
Length=1620
Score = 2449 bits (1326), Expect = 0.0
Identities = 1523/1621 (94%), Gaps = 2/1621 (0%)
Strand=Plus/Plus
Query 1 ATGATTGCAACACAAACATTTGTCTCTGTCCTTTTCTTTGTCCTCTTCCTTATATCTCTC 60
||||||||||||||||| |||||||||||| ||||||||||| ||||||| ||||||||
Sbjct 1 ATGATTGCAACACAAACCTTTGTCTCTGTCTTTTTCTTTGTCTTCTTCCTCGTATCTCTC 60
Query 61 CCTTTCTCCACATTCGCTGCACCTCCGTCGTCGGACTCTATCTACGAATCCTTTGTTCAA 120
||||||| | ||| ||| ||||||||||| || || |||||||||||||| || ||||||
Sbjct 61 CCTTTCTTCTCATCCGCAGCACCTCCGTCTTCTGATTCTATCTACGAATCATTCGTTCAA 120
Query 121 TGTTTCTCTGACAAGACGAAATCTCCACAAACCCAAATCACTGACAATGTCTTCTCTCAG 180
|||||||| |||||||| |||||||||||| |||||||||| |||||||||||||||| |
Sbjct 121 TGTTTCTCCGACAAGACAAAATCTCCACAAGCCCAAATCACCGACAATGTCTTCTCTCGG 180
Query 181 ACAAACCCTTCTTTCTCCTCCGTCCTTCGTGCTTACATTCGAAATGGGAGGTTCAACACT 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 ACAAACCCTTCTTTCTCCTCCGTCCTTCGTGCTTACATTCGAAATGGCAGGTTCAACACT 240
Query 241 TCATCTACTCCAAAACCCA-CTATCATCGTCACTCCTCGCTCCGAGAGCCACGTCAGCGC 299
|||||||| |||||| ||| ||||||||||||||||||||||||| | ||||||||||||
Sbjct 241 TCATCTACGCCAAAA-CCAGCTATCATCGTCACTCCTCGCTCCGATATCCACGTCAGCGC 299
Query 300 CGCCGTCACTTGCTCAAAAACACTAAATTTCCTCCTCAAAATCCGAAGTGGTGGCCATGA 359
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 300 CGCCGTCACTTGCTCAAAAAGTTTAAATTTCCTTCTCAAAATCCGAAGTGGTGGCCATGA 359
Query 360 TTACGAAGGTCTCTCTTACATCTCCGATAAACCCTTTTTTATACTCGACATGTCGAATCT 419
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 360 TTACGAAGGTCTCTCTTACATCTCTGATAAACCATTTTTTATACTCGACATGTCGAATCT 419
Query 420 CCGTGATGTCTCTGTCGATATCGCCGATCAATCGGCGTGGATCTCCGCCGGAGCAACTCT 479
||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 420 CCGTGATGTCTCTGTTGATATCGCCGATCAATCAGCTTGGATCTCCGCCGGAGCAACTCT 479
Query 480 CGGCGAGGTTTATTACAGAATTTGGGAGAAAAGCAAAGTCCATGGATTTCCCGCCGGAGT 539
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGGTGAGGTTTATTACAGAATTTGGGAGAAAAGCAAAGTCCATGGATTTCCCGCCGGAGT 539
Query 540 TTGTCCGACGGTTGGTGTTGGTGGACATATAAGCGGCGGTGGTTACGGTAATATGTTGAG 599
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 TTGTCCCACGGTTGGTGTTGGTGGACATATAAGCGGTGGTGGTTACGGTAATATGTTGAG 599
Query 600 AAAATTCGGATTATCAGTTGATAACTTGATCGATGCGAAAATCGTCGATGTAAATGGTCA 659
|||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct 600 GAAATTCGGATTATCAGTTGATAACTTGATCGATGCGAAGATCGTTGATGTTAACGGTCA 659
Query 660 GATTTTAGACCGGAAAGCAATGGGTGAGGATCTTTTTTGGGCGATTTGCGGCGGCGGAGG 719
||||||||||||||| | ||||||||||||||||||||||| |||| ||| || |||||
Sbjct 660 AATTTTAGACCGGAAATCGATGGGTGAGGATCTTTTTTGGGCTATTTCCGGTGGAGGAGG 719
Query 720 AGCTAGCTTTGGCGTCGTTTTGGGATACAAGGTCAAGCTCGTTCCTGTGCCAGAAACTGT 779
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 720 GGCTAGCTTCGGCGTCGTTTTGGGTTACAAGGTCAAGCTCGTTCCTGTGCCAGAAACTGT 779
Query 780 TACGGTTTTTAGAGTGGAGAAGTATATGGATTCAGGAGCGGTGGATATGGTTCACAAATG 839
||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TACAGTCTTTAGGGTGGAGAAGTATATGGATTCAGGAGCGGTGGATATGGTTCACAAATG 839
Query 840 GCAATCCGTTGGTCCGAAAACCGACCGGAATCTGTTTTTGAGAATGTTGATTCAACAAGC 899
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
Sbjct 840 GCAATCCGTTGGTCCAAAAACCGACCGGAATCTATTTTTGAGAATGTTGATTCAACCGGT 899
Query 900 GACAAGGAAGAAGGTGAAGACGGTGAGAGCTACTGTGGTGGCTCTGTTTTTAGGCAGAGC 959
||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 900 GACGAGGAAGAAGGTAAAGACTGTGAGAGCTACTGTGGTGGCTCTGTTTTTAGGCAGAGC 959
Query 960 AGACGAAGTTGTTGCGTTGCTTCGTAAGGAGTTTCCTGAATTGGGTTTAAAGAAGGAGAA 1019
||| ||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 960 AGAGGAAGTTGTTGCTTTGCTTGGTAAGGAGTTTCCTGAATTGAGTTTAAAGAAGGAGAA 1019
Query 1020 TTGTACGGAGATGTCTTGGTTTCAGTCTGCTTTATGGTGGGATAATCGTGTTAATGCTAC 1079
||| |||||||| ||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1020 CTGTTCGGAGATGACTTGGTTTCAGTCAGCTTTATGGTGGGATAATCGTGTTAACCCTAC 1079
Query 1080 TCAGATTGATCCTAAAGTGTTTCTTGATCGGAATCTTGATAGAGCGAATTTCGGGAAGAG 1139
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1080 TCAGATTGATCCTAAAGTGTTTCTCGATCGGAATCTTGATAGAGCGAATTTCGGAAAGAG 1139
Query 1140 GAAATCGGATTACGTTGTGAGTGAGATTCCTAGAGATGGGATTGAGTCTTTGTTCAAGAA 1199
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GAAATCGGATTACGTTGCGAGTGAGATTCCTAGAGATGGGATTGAGTCTTTGTTCAAGAA 1199
Query 1200 GATGATTGAGTTGGGGAAAATCGGGCTTGTTTTTAATCCGTATGGTGGGAAAATGGCGGA 1259
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GATGACTGAGCTGGGGAAAATCGGGCTTGTTTTTAATCCGTATGGTGGGAAAATGGCGGA 1259
Query 1260 GGTTTCGGTTGATGCGACCCCGTTTCCGCACCGAAACAAGCTTTTCAAGATTCAGTACTC 1319
|||| ||||| | ||||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1260 GGTTACGGTTAACGCGACGCCGTTTCCGCACCGAAGCAAGCTTTTTAAGATTCAGTACTC 1319
Query 1320 GGTGACCTGGCAAGAAAACTCTGTCGAGATAGAGAAGGGTTTCTTGAATCAGGCTAACGT 1379
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GGTGACTTGGCAAGAAAACTCTGTCGAGATAGAGAAGGGTTTCTTGAATCAGGCTAACGT 1379
Query 1380 TCTTTATAGTTTCATGACCGGGTTTGTGAGCAAGAACCCCAGAAATGCTTACTTGAATTA 1439
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1380 TCTTTATAGTTTCATGACCGGGTTTGTGAGCAAGAACCCTAGAAATGCTTACTTGAATTA 1439
Query 1440 CCGAGATGTGGATATCGGTGTGAACGATCATGGTGCGAATAGTTATGAGGAAGGAGAGGT 1499
||||||||| ||||| |||||||| ||||||||| |||||||||||||||||||||| ||
Sbjct 1440 CCGAGATGTCGATATAGGTGTGAATGATCATGGTACGAATAGTTATGAGGAAGGAGAAGT 1499
Query 1500 GTATGGAAGGAAGTATTTTGGAGATAATTTTGATCGATTAGTAAAGGTTAAAACCGCGGT 1559
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1500 GTATGGAAGGAAGTATTTTGGAGATAATTTTGATCGATTAGTAAAGGTTAAAACAGCGGC 1559
Query 1560 TGATCCCGATAATTTCTTCATGAATGAACAAAGTATACCTACCTTGCTTAGCAAGGCATA 1619
|||||| ||||||||||||| ||||||||| |||||||||||| ||||||||||||||||
Sbjct 1560 TGATCCAGATAATTTCTTCAGGAATGAACAGAGTATACCTACCGTGCTTAGCAAGGCATA 1619
Query 1620 G 1620
|
Sbjct 1620 G 1620
> AT4G20830.1 | Symbols: | FAD-binding Berberine family protein
| chr4:11155453-11157806 FORWARD LENGTH=1975
Length=1975
Score = 1923 bits (1041), Expect = 0.0
Identities = 1427/1611 (89%), Gaps = 35/1611 (2%)
Strand=Plus/Plus
Query 11 CACAAACATTTGTCTCTGTCCTTTTCTT-TGTCCTCTTCCTTATATCTCTCCCTTTCTCC 69
||| ||| ||||||||||||| |||||| | || |||||| | |||| ||||||||
Sbjct 50 CACGAACCTTTGTCTCTGTCCCTTTCTTCT-TCTTCTTCC---T-CCTCTTCCTTTCTCT 104
Query 70 ACATTCGCTGCA-C-CTC-CGTC-GTCGGACTCTATCTACGAATC-CTTTGTTCAA-TGT 123
|| || || || | || | || ||| ||||| | ||| || | |||| |||| |||
Sbjct 105 AC-CTCTCT-CATCTTTCTC-TCAATCGAACTCTGTATAC-AA-CTCTTTCCTCAAGTGT 159
Query 124 TTCTCTGACAAGACGAAATCTCCACAAACCCAAATCACTGACAATGTCTTCTCTCAGACA 183
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 160 TTCTCCGACAAGACGAAATCTCCACAATCCCAAATCACTGACAATGTCTTCTCTCAGACA 219
Query 184 AACCCTTCTTTCTCCTCCGTCCTTCGTGCTTACATTCGAAATGGGAGGTTCAACACTTCA 243
|||||| ||||||||||||| |||||||||||||| || |||| |||||||||||||||
Sbjct 220 AACCCTGCTTTCTCCTCCGTTCTTCGTGCTTACATCCGCAATGCGAGGTTCAACACTTCC 279
Query 244 TCTACTCCAAAACCCACTATCATCGTCACTCCTCGCTCCGAGAGCCACGTCAGCGCCGCC 303
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 280 TCTACTCTTAAACCCACCATCATAATCACTCCTCGCTCCGAGAGCCACGTCAGCGCCGCC 339
Query 304 GTCACTTGCTCAAAAACACTAAATTTCCTCCTCAAAATCCGAAGTGGTGGCCATGATTAC 363
||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |||
Sbjct 340 GTCACTTGCTCAAAAACCCTAAATTTCCTCCTCAAAATCCGAAGCGGCGGCCATGACTAC 399
Query 364 GAAGGTCTCTCTTACATCTCCGATAAACCCTTTTTTATACTCGACATGTCGAATCTCCGT 423
|| |||||||||||||| ||||| ||||| ||||| || ||||||||||||||| |||||
Sbjct 400 GATGGTCTCTCTTACATTTCCGACAAACCATTTTTCATCCTCGACATGTCGAATATCCGT 459
Query 424 GATGTCTCTGTCGATATCGCCGATC-AAT-CGGCGTGGATCTCCGCCGGAGCAACTCTCG 481
|| |||||||| ||||||||| || ||| |||| ||||||||||||||||| |||||||
Sbjct 460 GACGTCTCTGTAGATATCGCC--TCGAATTCGGCATGGATCTCCGCCGGAGCGACTCTCG 517
Query 482 GCGAGGTTTATTA-CAGAATTTGGGAGAAAAGCAAAGTCCATGGATTTCCCGCCGGAGTT 540
| ||||||||||| | || ||||||||||||||| |||||||||||| ||||||||||||
Sbjct 518 GAGAGGTTTATTATCGGA-TTTGGGAGAAAAGCAGAGTCCATGGATTCCCCGCCGGAGTT 576
Query 541 TGTCCGACGGTTGGTGTTGGTGGACATATAAGCGGCGGTGGTTACGGTAATATGTTGAGA 600
||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| ||||
Sbjct 577 TGTCCGACGGTTGGTGTTGGTGGGCATTTAAGCGGCGGTGGTTACGGTAACATGGTGAGG 636
Query 601 AAATTCGGATTATCAGTTGATAAC-TTGATCGATGCGAAAATCGTCGATGTAAATGGTCA 659
|| || |||||||| || ||| || |||| ||||| || |||||||||||||| ||||
Sbjct 637 AAGTTTGGATTATCTGTGGATTACGTTGAG-GATGCCAAGATCGTCGATGTAAACGGTCG 695
Query 660 GATTTTAGACCGGAAAGCAATGGGTGAGGATCTTTTTTGGGCGATTTGCGGCGGCGGAGG 719
| ||||||| |||||||||||||||||||||||||| ||||||||| ||| || |||||
Sbjct 696 GGTTTTAGATCGGAAAGCAATGGGTGAGGATCTTTTCTGGGCGATTACCGGTGGAGGAGG 755
Query 720 AGCTAGCTTTGGCGTCGTTTTGGGATACAAGGTCAAGCTCGTTCCTGTGCCA--GAAACT 777
|| ||||| |||||||||||||||||||| |||||||| |||||||||||| | |
Sbjct 756 AGGTAGCTACGGCGTCGTTTTGGGATACAAAGTCAAGCTTGTTCCTGTGCCATCGGT-C- 813
Query 778 GTTACGGTTTTTAGAGTGGAGAAGTATATGGATTCAGGAGCGGTGGATATGGTTCACAAA 837
|||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 814 GTTACGGTGTTTAGAGTGGAGCAGTATATGGATTCAGGAGCTGTGGATATGGTTCACAAA 873
Query 838 TGGCAATCCGTTGGTCCGAAAACCGA-CCGGAATCTGTTTTTGAGAATGTTGATTCAACA 896
|||||||| |||||||||||||| || ||| ||||||||| ||||||||||||||||||
Sbjct 874 TGGCAATCGGTTGGTCCGAAAACTGATCCG-AATCTGTTTATGAGAATGTTGATTCAACC 932
Query 897 AGCGACAAGGAAGAAGGTGAAGACGGTGAGAGCTACTGTGGTGGCTCTGTTTTTAGGCAG 956
|| ||| ||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||
Sbjct 933 AGTGACGAGGAAGAAGGTAAAGACTGTGAGAGCTTCTGTGGTTGCTCTGTTTTTAGGCAG 992
Query 957 AGCAGACGAAGTTGTTGCGTTGCTTCGTAAGGAGTTTCCTGAATTGGGTTTAAAGAAGGA 1016
|||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 993 AGCAGATGAAGTTGTTGCTTTGCTTAGTAAGGAGTTTCCTGAATTGGGTTTAAAGAAGGA 1052
Query 1017 GAATTGTACGGAGATGTCTTGGTTTCAGTCTGCTTTATGGTGGGATAATCGTGTTAATGC 1076
||||||| |||||||| |||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1053 GAATTGTTCGGAGATGACTTGGTTTCAGTCTGCTTTATGGTGGGACAATCGTCTTAATGC 1112
Query 1077 TACTCAGATTGATCCTAAAGTGTTTCTTGATCGGAATCTTGATAGAGCGAATTTCGGGAA 1136
||||||| ||||||||||||||||||||||||||||||| |||| ||| |||||| ||
Sbjct 1113 TACTCAGGTTGATCCTAAAGTGTTTCTTGATCGGAATCTCGATACCTCGAGTTTCGGTAA 1172
Query 1137 GAGGAAATCGGATTACGTTGTGAGTGAGATTCCTA-GAGATGGGATTGAGTCTTTGTTCA 1195
|||||||||||||||||| | || || |||||| | || | |||||||||||||||||||
Sbjct 1173 GAGGAAATCGGATTACGTCGCGACTGCGATTCCGAAGAAA-GGGATTGAGTCTTTGTTCA 1231
Query 1196 AGAAGATGATTGAGTTGGGGAAAATCGGGCTTGTTTTTAATCCGTATGGTGGGAAAATGG 1255
|||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1232 AGAAGATGATTGAGTTAGGGAAAATCGGGCTTGTTTTCAATCCGTATGGAGGGAAAATGG 1291
Query 1256 CGGAGGTTTCGGTTGATGCGACCCCGTTTCCGCACCGAAACAAGCTTTTCAAGATTCAGT 1315
|||||||| ||||| | |||| |||||||| || |||||||||||||||||||||||||
Sbjct 1292 CGGAGGTTGCGGTTAACGCGAAGCCGTTTCCACATCGAAACAAGCTTTTCAAGATTCAGT 1351
Query 1316 ACTCGGTGACCTGGCAAGAAAACTCTGTC-GAGATAGAGAAGGGTTTCTTGAATCAGGCT 1374
|||| |||| |||| |||||||||||| | |||||||||||||| | |||||||||||||
Sbjct 1352 ACTCTGTGAACTGGAAAGAAAACTCTG-CAGAGATAGAGAAGGGGTACTTGAATCAGGCT 1410
Query 1375 AACGTTCTTTATAGTTTCATGACCGGGTTTGTGAGCAAGAACCCCAGAAATGCTTACTTG 1434
|| || ||||| ||||||||||||||||||||||||||||| || || | | |||||||
Sbjct 1411 AAGGTGCTTTACAGTTTCATGACCGGGTTTGTGAGCAAGAATCCTAGGAGTTCTTACTTC 1470
Query 1435 AATTACCGAGATGTGGATATCGGTGTGAACGATCATGGTGCGAATAGTTATGAGGAAGGA 1494
|||||||| ||||| |||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 1471 AATTACCGGGATGTCGATATCGGTGTGAATGATCATGGGGCGAATAGTTACAAGGAAGGA 1530
Query 1495 GAGGTGTATGGAAGGAAGTATTTTGGAGATAATTTTGATCGATTAGTAAAGGTTAAAACC 1554
||||||||||||||||||||||| ||||| ||||| ||||||||||| ||| ||||||||
Sbjct 1531 GAGGTGTATGGAAGGAAGTATTTCGGAGAGAATTTCGATCGATTAGTGAAGATTAAAACC 1590
Query 1555 GCGGTTGATCCCGATAATTTCTTCATGAATGAACAAAGTATACCTACCTTG 1605
||||||||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct 1591 GCGGTTGATCCCGGGAATTTCTTCAGGAATGAACAGAGTATACCTACCTTG 1641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80019668730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5