BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492810
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20760.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1740 0.0
> AT4G20760.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr4:11129015-11130770 FORWARD LENGTH=1154
Length=1154
Score = 1740 bits (942), Expect = 0.0
Identities = 1086/1155 (94%), Gaps = 12/1155 (1%)
Strand=Plus/Plus
Query 1 TCGTTACCCATTTCTTCAATGAACACTCTGGTGAAGAGCGGTGGCGCGTGGCTAGTTTCG 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||
Sbjct 11 TCGTTACCCATTTCTTCAATGAACACTCTGGTGAGGAGCGGTGGCGCGTGGCTGGTATCG 70
Query 61 CCGTCGTTGGCGGTGGTGGCTCTGAGGAAGATGAGAGTGTCTGGTTTAGCCACGTCATCA 120
||||| |||| |||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 71 CCGTCAATGGCAGTGGCGGCTCTGAAGAGGATGAGAGTGTCTGGTTTAGCCACGTCATCA 130
Query 121 TCATCTTCTTTTCCCAATTGGGAAGGTGGAGTTTCCATGGTCCAAGGAGCTTCCAGAGGC 180
||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 131 TCATCTTCTGTTCCTAATTGGAAAGGTGGAGTTTCCATGGTCCAAGGAGCTTCCAGAGGC 190
Query 181 ATCGGCCTCGAATTTGTAAGACAGTTGCTGGAGAACAATGAGAAAGGGTATGTTGTTGCT 240
|| || |||||||||||| |||||||||||||||||||| |||| |||||||||||||||
Sbjct 191 ATTGGTCTCGAATTTGTACGACAGTTGCTGGAGAACAATAAGAACGGGTATGTTGTTGCT 250
Query 241 ACTTGCCGAAATCCAAAAGAAGCAACAAGTCTCTCTGATTTGAAGAATCGTTTCTCTGAA 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 251 ACTTGCCGAAATCCAAAAGAAGCAACAAGTCTCTCTGATTTGAAGAACCGTTTCTCTGAA 310
Query 301 AGACTGTTCATCCAAAAGCTTGATGTTACAGATGAAACTACCATTGAGGAATCAGCGGAA 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 AGACTTTTCATCCAAAAGCTTGATGTTACAGATGAAACTACCATTGAGGAATCAGCGGAA 370
Query 361 TCTGTGAGAGAAAGATATGGTTCTCTCAACCTTCTTATAAATGCAGCTGGTATACTCTCC 420
||||||||||||| ||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 371 TCTGTGAGAGAAAAATATGGTTCTCTCAATCTACTTATAAATGCAGCTGGTATACTTTCA 430
Query 421 ATTCCTGGCGTATTGCAGCCAGAAACAACATTGAACAAAGTTGAAAAATCATCGTTGATG 480
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 431 ATTCCTGGCGTATTGCAGCCAGAAACAACATTGAACAAGGTCGAAAAATCATCGTTGATG 490
Query 481 CTTGCTTACGAGGTTAACGCTGTTGGTCCAATTCTAGTGATGAAGCATATGTGGCCACTC 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 491 CTTGCTTACGAGGTTAACGCTGTTGGTCCAATTCTAGTGATGAAGCATATGTGGCCTCTC 550
Query 541 CTTAAGGCTGGTGGAGGTAGTGGAACTGAGAGGGAAGTTGCTGTTGTAGCCAATTTAAGC 600
|||||||||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 551 CTTAAGGCTGGTGGAGGTAGTGGAACAGATAGAGAAGTTGCTGTTGTAGCCAATTTAAGC 610
Query 601 GCCCGCGTTGGATCCATTGGAGATAACCGACTTGGTGGTTGGCACTCTTACAGGGCTTCA 660
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 GCTCGAGTTGGATCCATTGGAGATAACCGACTTGGTGGTTGGCACTCTTACAGGGCTTCA 670
Query 661 AAAACAGCACTCAATCAACTGACGAAAAATGTATCGGTTGAGTTAGGTAGGAGGAAAGAT 720
||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 671 AAATCCGCACTCAATCAACTGACAAAAAATGTATCGGTTGAGTTAGGTAGGAGGAAAGAT 730
Query 721 CCTGTGGTATGCATTCTACTGCATCCAGGCACAGTAGACACTGATCTCTCTCGGCCGTTT 780
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 731 CCTGTGGCATGCATTCTACTACATCCAGGCACAGTAGACACTGATCTCTCTCGGCCGTTT 790
Query 781 CAAAAGAATGTTCCTGATGGAAAACTTTTCACAAGAGAGTACTCTGTTCAGAAGTTATTG 840
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 791 CAAAGGAATGTTCCTGACGGAAAACTTTTCACAAGAGAGTACTCTGTTCAGAAGTTACTG 850
Query 841 CACATCATCAACAATGCTAAGAAACAAGATAACGGCAAGTTCTTTGCTTGGGATGGCCAG 900
||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 851 CACATCATCAACAATACTAAGAAACAAGACAGCGGCAAGTTCTTTGCTTGGGATGGCCAG 910
Query 901 GAGATACCTTGGTGATTTCTTGAT-TGGTTTTCTCGATCCGAATGGTCAGTTCTTTCAAA 959
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 911 GAGATACCTTGGTGATTTCTT-ATATGGTTTTCTCGATCCGAATGGTCAGTTCTTTCAAA 969
Query 960 TTCTATTGAATTCTTGTCGGGtttttttGTTCACTTTCTTGGTTTGAGAGCAATTCCTTG 1019
|||||||||||||||||||| |||||| ||| ||||||||||||||||||||||| |
Sbjct 970 GTCTATTGAATTCTTGTCGGGGTTTTTT---CACGTTCTTGGTTTGAGAGCAATTCCTCG 1026
Query 1020 GAGTAAAATCGAATAACTTGGAGTGAGCATCCAGAAGCTGAGAGCATTCTGACTATATTA 1079
||||| |||||||| ||||||||||| ||||||||||||||||| |||||| ||||| |
Sbjct 1027 -AGTAATATCGAATAGCTTGGAGTGAGTATCCAGAAGCTGAGAGCTTTCTGAGTATAT-A 1084
Query 1080 TAATAATAATCAATGTGATGGTATAAACTTCTATCTACATTGTGTATTACTACATAATTT 1139
| ||| |||||||||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct 1085 -A-TAAC---CAATGTGATGGTATAATCTTCTATCTACATTTTGTATTACTGCATAATTT 1139
Query 1140 TACACACTATTTTCG 1154
||||| |||||||||
Sbjct 1140 TACACGCTATTTTCG 1154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56626214760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5