BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492815
Length=1429
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20440.1 | Symbols: smB | small nuclear ribonucleoprotein as... 1742 0.0
AT5G44500.1 | Symbols: | Small nuclear ribonucleoprotein famil... 525 4e-148
> AT4G20440.1 | Symbols: smB | small nuclear ribonucleoprotein
associated protein B | chr4:11022142-11023752 REVERSE LENGTH=1611
Length=1611
Score = 1742 bits (943), Expect = 0.0
Identities = 1052/1104 (95%), Gaps = 10/1104 (1%)
Strand=Plus/Plus
Query 67 CGAATCTCTGCTTGTAGCGAGTGTTACTGTTTAATCGGCGAAAATGTCGATGTCGAAGAG 126
|||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||
Sbjct 94 CGAATCTCTGCTTGTAGCGAGTGTTACTATTCAATCGGCGAGAATGTCGATGTCGAAGAG 153
Query 127 TTCAAAGATGCTTCAGTTCATCAACTACAGGATGCGAGTGACGATCCAAGACGGAAGACA 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 TTCAAAGATGCTTCAGTTCATCAACTACAGGATGCGAGTGACGATCCAAGACGGAAGACA 213
Query 187 GCTCGTTGGGAAGTTCATGGCGTTTGACCGTCACATGAACCTCGTTCTCGGCGATTGCGA 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 GCTCGTTGGGAAGTTCATGGCGTTTGACCGTCACATGAACCTCGTTCTCGGCGATTGCGA 273
Query 247 GGAGTTTCGTAAGCTTCCACCAGCGAAAGGGAAGAAGATCAACGAAGAGCGTGAAGATCG 306
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 274 GGAGTTTCGTAAGCTTCCACCAGCTAAAGGGAAGAAGATCAACGAAGAGCGTGAAGATCG 333
Query 307 CCGTACGCTAGGTTTGGTTTTGCTTAGAGGTGAAGAAGTTATCTCAATGACTGTTGAAGG 366
||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 334 CCGTACGCTAGGTTTAGTGTTGCTTAGAGGTGAAGAAGTTATCTCAATGACTGTCGAAGG 393
Query 367 ACCACCTCCTCCTGAAGAATCTCGTGCTAAAGCTGGCTCTGCAGCTGCTGTTGCTGGTCC 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 ACCACCTCCTCCTGAAGAATCTCGTGCTAAAGCTGGCTCTGCAGCTGCTGTTGCTGGTCC 453
Query 427 AGGAATTGGCCGTGCCGCTGGGCGTGGAGTTCCAACTGGTCCGTTAATTCAAGCTCAGCC 486
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 454 AGGAATTGGCCGTGCCGCTGGGCGTGGAGTTCCTACTGGTCCGTTAGTTCAAGCTCAGCC 513
Query 487 TGGACTATCAGGTCCTGTTCGTGGTGTTGGTGGACCAGCTCCGGGAATGATGCAGCCTCA 546
||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 514 TGGTTTATCTGGTCCTGTTCGTGGTGTTGGTGGACCTGCTCCGGGAATGATGCAGCCTCA 573
Query 547 GATCTCTCGTCCGCCACAGCTTTCGGCTCCTCCGATTATTCGACCTCCGGGACAGATGTT 606
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 574 GATCTCTCGTCCACCACAGCTTTCAGCTCCTCCGATTATTCGACCTCCGGGACAGATGTT 633
Query 607 GCCACCTCCTCCAGCTTTTGGTGGTCAAGGTCCTCCAATGGGAAGAGGTCCTCCACCGCC 666
|||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 634 GCCACCGCCTCC---TTTTGGTGGTCAAGGTCCTCCTATGGGAAGAGGTCCTCCACCGCC 690
Query 667 TTACGGTATGAGGCCACCGCCACAGCAGTTTTCTGGACCACCACCGCCTCAGTATGGACA 726
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 691 TTATGGTATGAGGCCACCGCCACAGCAGTTTTCTGGACCACCACCGCCTCAGTATGGGCA 750
Query 727 AAGGCCAATGATTCCTCCTCCTGGTGGTATGATGAGAGGACCTCCTCCTCCACCTCATGG 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 AAGGCCAATGATTCCTCCTCCTGGTGGTATGATGAGAGGACCTCCTCCTCCACCTCATGG 810
Query 787 GATGCAAGGACCGCCTCCGCCTCGCCCTGGAATGCCTCCCCCTCCTGGTGGTTTTGCTCC 846
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 811 AATGCAAGGACCTCCTCCGCCTCGCCCTGGAATGCCTCCTGCTCCTGGTGGTTTTGCTCC 870
Query 847 ACCGCGTCCTGGCATGCCACCACATAATCAGCAGCAGTGATTAGGTTAGCAGTGAATGAA 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 ACCGCGTCCTGGCATGCCACCACATAATCAGCAGCAGTGATTAGGTTAGCAGTGAATGAA 930
Query 907 TATGACTCTTGTCTCGGGTTTTTACTGTTTTTGTCGCTGTTTTCTTGAGATTGTGAAGGC 966
| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 931 CAGGACTCTTGTCTCGGCTTTTTACTGTTTTTGTCGCTGTTTTCTTGAGATTATGAAGGC 990
Query 967 TTAAAGTTGGTTGATTGAACTTCCTCAGGTTTACAGTATCGTGCTATCATGTTGCCTTTC 1026
|| ||| || |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 991 TTTAAGATGTTTGATTGAACTTCCTCAGGTTTACGGTATCGTGCTATCATGTTGCCTTTC 1050
Query 1027 ATTGAATTTAGCCGCAATCTCTCATTTATCTTAGCTTGCAAAGTTTGTAGATTTGTTGAC 1086
||||| |||||||||||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1051 ATTGACTTTAGCCGCAATTTCTCATCTATCTTAGCTTTCAAAGTTTGTAGATTTGTTGAC 1110
Query 1087 GAGTGAGT-GTCTTTGCCTTATCTTCTTGTGTTT-CTTTTTAAGAATGAA-C-ATCTAAC 1142
|||||||| ||||||||||||||||||||||||| ||||| ||||| ||| | || |||
Sbjct 1111 GAGTGAGTTGTCTTTGCCTTATCTTCTTGTGTTTTCTTTT-AAGAACGAATCCAT-TAAA 1168
Query 1143 TCTTTGTTTTGGATTGTTTAGGTA 1166
||||||| || || || |||||
Sbjct 1169 -CTTTGTTATGTCTTCTTAAGGTA 1191
Score = 106 bits (57), Expect = 7e-22
Identities = 64/67 (96%), Gaps = 1/67 (1%)
Strand=Plus/Plus
Query 1 GCACAGCCAAAAACCCCCAATTTTGGCCTCTCGATTTAGTTTTT-GAAACCCTAAGCTCG 59
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 GCACAGCCAAACCCCCCCAATTTTGGCCTCTCGATTTAGTTTTTTGAAACCCTAAGCTCG 60
Query 60 ATTTCGA 66
|||||||
Sbjct 61 ATTTCGA 67
> AT5G44500.1 | Symbols: | Small nuclear ribonucleoprotein family
protein | chr5:17927453-17929463 FORWARD LENGTH=1132
Length=1132
Score = 525 bits (284), Expect = 4e-148
Identities = 630/786 (80%), Gaps = 67/786 (9%)
Strand=Plus/Plus
Query 102 CGGCGAAAATGTCGATGTCGAAGAGTTCAAAGATGCTTCAGTTCATCAACTACAGGATGC 161
|||| |||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 45 CGGCAAAAATGTCGATGTCGAAGAGCTCCAAGATGCTTCAGTTCATAAACTACAGGATGC 104
Query 162 GAGTGACGATCCAAGACGGAAGACAGCTCGTTGGGAAGTTCATGGCGTTTGACCGTCACA 221
|||| || |||||||||||||||||||| | || || ||||||||||| || || ||||
Sbjct 105 GAGTAACAATCCAAGACGGAAGACAGCTAATCGGAAAATTCATGGCGTTCGATCGCCACA 164
Query 222 TGAACCTCGTTCTCGGCGATTGCGAGGAGTTTCGTAAGCTTCCACCAGCGAAAGG---GA 278
|||| || ||||| ||||| ||||| |||||||| || ||||| || |||||||| |
Sbjct 165 TGAATCTTGTTCTTGGCGACTGCGAAGAGTTTCGAAAACTTCCTCCGGCGAAAGGTAATA 224
Query 279 AGAAGATC-AACGAAGAGCGTGAAGATCGCCGTACGCTAGGTTTGGTTTTGCTTAGAGGT 337
|||||| | |||||||| | ||||| || |||||||| ||||||||||| ||||||||
Sbjct 225 AGAAGA-CGAACGAAGAAAGAGAAGAGCGTCGTACGCTTGGTTTGGTTTTACTTAGAGGA 283
Query 338 GAAGAAGTTATCTCAATGACTGTTGAAGGACCACCTCCTCCTGAAGAATCTCGTGCTAAA 397
|||||||| || || |||||||| ||||| ||||| || |||||||||||||| || |||
Sbjct 284 GAAGAAGTGATTTCGATGACTGTCGAAGGTCCACCGCCACCTGAAGAATCTCGCGCCAAA 343
Query 398 GCTGGCTCTGCAGCTGCTGTTGCTGGTCCAGGAATTGGCCGTGCCGCTGGGCGTGGAGTT 457
|||| |||| | | ||||| |||||||| ||||| || ||||| ||||| ||||||||
Sbjct 344 TCTGGATCTGTAACCGCTGTGGCTGGTCCCGGAATCGGTCGTGCTGCTGGACGTGGAGTA 403
Query 458 CCAACTGGTCCGTTAATTCAAGCTCAGCCTGGACTATCAGGTCCTGTTCGTGGTGTTGGT 517
|| |||||||| || |||||||||||||||| |||| |||||||||||||| |||||
Sbjct 404 CCTACTGGTCCATTGGTTCAAGCTCAGCCTGGTTTATCTGGTCCTGTTCGTGGAATTGGT 463
Query 518 GGACCAGCTCCGGGAATGATGCAGCCTCAGATCTCTCGTCCGCCACAGCTTTCGGCTCCT 577
||||| ||||| |||||||||||||||||||||||| | || |||||
Sbjct 464 GGACCTGCTCCTGGAATGATGCAGCCTCAGATCTCTAGACCACCACA------------- 510
Query 578 CCGATTATTCGACCTCCGGGACAGATGTTGCCACCTCCTCCAGCTTTTGGTGGTCAAGGT 637
||||||||| ||||||||||| | ||||||| | || | ||| | | | ||
Sbjct 511 --GATTATTCGTCCTCCGGGACA-A--ATGCCACCACAGCC-TCCTTT--T-G-C-TGG- 558
Query 638 CCTCCAATGGGAAGAGGTCCTCCACCGCCTTACGGTATGAGGCCACCGCCACAGCAGTTT 697
| ||| | |||||||||| || ||||| ||||||| | | |||| | || |
Sbjct 559 --T-CAA---G--GAGGTCCTCCTCCACCTTATGGTATGA-G--A---CCAC--C-GTAT 601
Query 698 TCTGGACCACCACCGCCTCAGTA---TGG--A-CAAAGGCC-A--ATGATTCCTCCTCCT 748
|||| ||||||||||||||||| ||| | |||||||| | ||||||||||| |||
Sbjct 602 CCTGGTCCACCACCGCCTCAGTATGGTGGACAGCAAAGGCCAATGATGATTCCTCCACCT 661
Query 749 GGTGGTATGATGAGAGGACCTCCTCCTCCACCTCATGGGATGCAAGGACCGCCTCCGCCT 808
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 662 GGTGGTATGATGAGAGGA---CCTCCTCCACCTCATGGTATGCAAGGACCGCCTCCTTCT 718
Query 809 CGCCCTGGAATGCCTCCCCCTCC-TGGTG----G-T-TTTGCTCCACCGCGTCCTGGCAT 861
|||||||||||||||||||| | ||||| | | |||||||| || | |||||||||
Sbjct 719 CGCCCTGGAATGCCTCCCCC-CGGTGGTGCTCCGATGTTTGCTCCGCCTCATCCTGGCAT 777
Query 862 GCCACC 867
||||||
Sbjct 778 GCCACC 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70431364635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5