BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492818
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20420.1 | Symbols: | Tapetum specific protein TAP35/TAP44 ... 854 0.0
> AT4G20420.1 | Symbols: | Tapetum specific protein TAP35/TAP44
| chr4:11016970-11017623 FORWARD LENGTH=654
Length=654
Score = 854 bits (462), Expect = 0.0
Identities = 600/664 (90%), Gaps = 20/664 (3%)
Strand=Plus/Plus
Query 1 CAAACAAACAACTTCAAAACAAAAAGAAGAATCATCTCTTGCTAAGA-ACTCCAAAAACA 59
||||||||||||||||||||||||||||||| ||||||||| ||| | ||||| || |
Sbjct 7 CAAACAAACAACTTCAAAACAAAAAGAAGAACCATCTCTTGTTAA-ACACTCC---AA-A 61
Query 60 GATCAGCTACAATGTCAATCTCAAGAGTTTGTCTCTGCCTAATTTTTCTCACATTCGTC- 118
|||||||||||||||||| |||||||||| |||||| ||||| |||||||||||||||
Sbjct 62 -ATCAGCTACAATGTCAATTTCAAGAGTTTATCTCTGTCTAATCTTTCTCACATTCGTCA 120
Query 119 GCTTCCCCACTTGTGCTCTGCTCTCGCAGCCCGAAACTCGCAGCACCATCAGCCGCTATA 178
| ||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||
Sbjct 121 G-TTCCCCACTTGTGCTCTGCTCTCGCAGCCCGAAACTCGCAGCAGCATCAGCAGCAATA 179
Query 179 GGGAAGAAGCTTGGGAAAGGACATGTTCATTCTCCCGCAATGCTTGTTTCTGAATCCCCC 238
|||||||||| |||||||| ||||||||||||||| ||||||||| ||||||||| |||
Sbjct 180 GGGAAGAAGCATGGGAAAGAACATGTTCATTCTCCGGCAATGCTTTTTTCTGAATTCCCG 239
Query 239 AAGGTTGATTCATCATCCTCCATGACCA-AGATTGATGAGCCTGCAACAAACTCTGCCAT 297
||||||||||||||||||||||||| || | |||||||||||||||||||| ||||| ||
Sbjct 240 AAGGTTGATTCATCATCCTCCATGA-CACATATTGATGAGCCTGCAACAAAGTCTGCAAT 298
Query 298 AGCCGGTTTTTTCAGGTATAGGTTCCCATTCCAAGGCTGGCCTTTCCACAAGTATGCTCC 357
||||||||||||||||||||| | |||||||| || |||||||||||||||||||||||
Sbjct 299 AGCCGGTTTTTTCAGGTATAGACTACCATTCCAGGGATGGCCTTTCCACAAGTATGCTCC 358
Query 358 TTTTCCAATGGGTACGCCTACGAATCCTTCC-TCCCCCGTAAGTGCAACACCATCTTCTG 416
||| ||||||||||| ||||||||||||||| | || |||| | ||||||| |||||||
Sbjct 359 TTTCCCAATGGGTACACCTACGAATCCTTCCGT-TCCTGTAACTTCAACACCGTCTTCTG 417
Query 417 GATCTGCTGCTGCTGAGGAAGAGGAATCCGAGAAGGTGCCTTCTTCGCCAAGCAAAGGAA 476
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 418 GAGCTGCTGCTGCTGAGGAAGAGGAAACCGAGAAGGTGCCTTCTGCGCCAAGCAAAGGAA 477
Query 477 ACAGAGATGGAGGCAACGCGTAGTGAATGAAAACAAGAAATGTTTTCTAGTAGAACCTTG 536
|||||||||||||||| || || |||| || | | | |||||||||| |||||||||
Sbjct 478 ACAGAGATGGAGGCAATGC---GT-AATG-AATC-A-ATATGTTTTCTACTAGAACCTTA 530
Query 537 TTGTGTTTTAATGGCTGTTGATTATTTCCTCTAGTTTTACATATTGTATCAAATAAAATG 596
||||||||||||| |||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 531 TTGTGTTTTAATGACTGTGGAATCTTTCCTCTAGTTTTACATATTGTATCAAATAAAATG 590
Query 597 TACCATGTATTATAAATGCTATGTGACATTTACATGGAAAAATGAAATGAATACAATTTA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 591 TACCATGTATTATAAATGCTATGTGACATTTACATGGAAAAATGAAATGAATACAGTTTC 650
Query 657 TCTT 660
||||
Sbjct 651 TCTT 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31898683345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5