BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492822
Length=766
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20390.1 | Symbols: | Uncharacterised protein family (UPF04... 1038 0.0
AT5G44550.1 | Symbols: | Uncharacterised protein family (UPF04... 363 2e-99
> AT4G20390.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr4:11007035-11008066 FORWARD LENGTH=824
Length=824
Score = 1038 bits (562), Expect = 0.0
Identities = 723/796 (91%), Gaps = 30/796 (4%)
Strand=Plus/Plus
Query 1 ATCACTTTCTCTTGATCACTCATTTCATCAACAATGGCCAGAGAGAAGATTGTGGTGGCT 60
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1 ATCACTTTCTCTTGATCACTCACTGCATCAACAATGGCCAGAGAGAAGATTGTGGTGGCT 60
Query 61 GGTGGTAGCACAAAGAGCTGGAAACTACTCTTGGGGCTGAGAATATTTGCATTCATGGCT 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTGGTACCACAAAGAGCTGGAAACTACTCTTGGGGCTGAGAATATTTGCATTCATGGCT 120
Query 121 ACTTTAGCTGCAGCCATTGTAATGTCACTAAACAAAGAGACAAAGACCTTGGTTGTGGCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACTTTAGCTGCAGCCATTGTAATGTCACTAAACAAAGAGACAAAGACCTTGGTTGTGGCC 180
Query 181 ACCATTGGTACTCTTCCTATCAAAGCCACTTTAACCGCTAAGTTTCAGGACACACCGGCC 240
|||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 181 ACCATTGGTACTGTTCCTATTAAAGCCACTTTAACCGCTAAGTTTCAGCACACACCGGCT 240
Query 241 TTTGTGTTCTTTGTTATAGCTAATGTAATGGTGAGCTTCCACAACTTGTTGATGATTGTT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTGTGTTCTTTGTTATAGCTAATGTAATGGTGAGCTTCCACAACTTGTTGATGATTGTG 300
Query 301 CTTCAGATTTTTAGCCGGAAACTGGAGTACAAAGGTGTCCGTCTCCTCTCTATCGCCATT 360
|||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 301 GTTCAGATTTTCAGCCGGAAACTGGAGTACAAAGGTCTTCGTCTCCTCTCTATCGCCATT 360
Query 361 CTAGACATGCTAAACGCAACTCTAGTATCTGCTGCTGCAAACGCGGCGGTATTCGTGGCG 420
|| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 361 CTTGACATGCTAAACGCAACACTAGTATCTGCGGCTGCAAACGCGGCGGTGTTCGTGGCA 420
Query 421 GAGTTGGGGAAGAATGGAAACAAGCACGCCAAGTGGAACAAAGTCTGCGACAGGTTTGCC 480
||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 GAGCTAGGGAAGAACGGAAACAAGCACGCCAAGTGGAACAAAGTCTGCGACAGGTTCACC 480
Query 481 ACTTACTGTGATCACGGCGCTGGAGCACTCATCGCCGCATTCGCCGGAGTCATTCTAATG 540
|||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||
Sbjct 481 ACTTACTGTGATCACGGCGCAGGAGCAATCATCGCAGCATTCGCCGGAGTCATTCTAATG 540
Query 541 CTCCTCGTCTCCTCCGTCTCCATTTCCCGCCTCTTAATCAATTCTAAACACTTATCCACC 600
|||||||| ||| ||||||| ||||||||||||||||||||||||||| |||| ||||||
Sbjct 541 CTCCTCGTGTCCGCCGTCTCTATTTCCCGCCTCTTAATCAATTCTAAAAACTTCTCCACC 600
Query 601 ACCGCCACCACAACCGCCGTCGTCTAAAACATCGCGGCCAAAAA----G-A---TG-GTG 651
||||||||||||||| |||||||||||||||||| ||||||||| | | || |||
Sbjct 601 ACCGCCACCACAACCTCCGTCGTCTAAAACATCGTGGCCAAAAATTCAGCAACATGTGTG 660
Query 652 TGGC--TT--AC---T-TTGTG--T------GT-TGT----CTCTCAAGTCACTATCAGA 690
|| | || | | ||||| | || ||| |||||||||||||| || |
Sbjct 661 TGACCATTTTATAGATGTTGTGGCTTACTTTGTGTGTTTGTCTCTCAAGTCACTAGCAAA 720
Query 691 TTGTCTAATGCACTCCCCTGTTCTATCACTTTCACATTTGTATACGAGTTTTAATTTCTC 750
|||| ||||||||||| ||||||||||||||||||||||||| | |||||| |||||||
Sbjct 721 TTGTGTAATGCACTCCTTTGTTCTATCACTTTCACATTTGTATTCAAGTTTTCATTTCTC 780
Query 751 TCTTTTCTTTTTATAT 766
|||| |||||||||||
Sbjct 781 TCTTATCTTTTTATAT 796
> AT5G44550.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr5:17941875-17943213 REVERSE LENGTH=858
Length=858
Score = 363 bits (196), Expect = 2e-99
Identities = 397/493 (81%), Gaps = 18/493 (4%)
Strand=Plus/Plus
Query 73 AAGAGCTGGAAACTACTCTTGGGGCTGAGAATATTTGCATTCAT-GGCTACTTTAGCTGC 131
|||||||| ||| ||||||| ||||||||| || |||| ||| | || || ||| ||||
Sbjct 79 AAGAGCTGCAAAATACTCTTAGGGCTGAGATTACTTGCCTTC-TCAGCCACGTTATCTGC 137
Query 132 AGCCATTGTAATGTCACTAAACAAAGAGACAAAGACCTTGGTTGTGGCCACCA-TTGGTA 190
||| ||||||||| ||| ||||||||||||||||| || |||||| || | |||| |
Sbjct 138 AGCTATTGTAATGGGACTCAACAAAGAGACAAAGACTTTTATTGTGGGCA-AAGTTGGAA 196
Query 191 CT-CTTCCTA-TCAAAGCCACTTTAACCGCTAAGTTTC-AGGACACACCGGCCTTTGTGT 247
| | ||| | || |||| ||||| || |||||| ||| | ||||||| || |||||||
Sbjct 197 ATAC-TCCAATTC-AAGCTACTTTTACTGCTAAG-TTCGACCACACACCAGCTTTTGTGT 253
Query 248 TCTTT-GTTA-TAGCTAATGTAATGGTGAGCTTCCACAACTTGTTGATGATTGTTCTTCA 305
| ||| | || ||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 254 T-TTTCG-TAGTAGCTAATGCAATGGTGAGCTTCCACAACTTGTTGATGATTGCTCTTCA 311
Query 306 GATTTTTAGCCGGAAACTGGAGTACAAAGGTGTCCGTCTCCTCTCTA-TCGCCATTCTAG 364
||| ||| | ||||| |||||| || ||| | || || ||||| | |||||||||| |
Sbjct 312 GATATTTGGAGGGAAAATGGAGTTCACTGGTTTTCGGCTTCTCTC-AGTCGCCATTCTTG 370
Query 365 ACATGCTAAACGCAACTCTAGTATCTGCTGCTGCAAACGCGGCGGTATTCGTGGCGGAGT 424
|||||||||| | |||||| | || || || ||||||||||||| ||| ||||||||
Sbjct 371 ACATGCTAAATGTGACTCTAATTTCGGCGGCAGCAAACGCGGCGGCGTTCATGGCGGAGG 430
Query 425 TGGGGAAGAATGGAAACAAGCACGCCA-AGTGGAACAAAGTCTGCGACAGGTTTGCCACT 483
| || ||||| || ||||| ||||| | | ||| ||||| |||| || || || ||||||
Sbjct 431 TAGGAAAGAACGGGAACAAACACGCGAGA-TGGGACAAAATCTGTGATAGATTCGCCACT 489
Query 484 TACTGTGATCACGGCGCTGGAGCACTCATCGCCGCATTCGCCGGAGTCATTCTAATGCTC 543
||||||||||||||||| |||||| | ||||||||||||||||| || || || ||||||
Sbjct 490 TACTGTGATCACGGCGCCGGAGCATTAATCGCCGCATTCGCCGGCGTAATCCTTATGCTC 549
Query 544 CTCGTCTCCTCCG 556
|| ||||| |||
Sbjct 550 ATCATCTCCGCCG 562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37223502927
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5