BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492829
Length=989
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20380.8 | Symbols: LSD1 | LSD1 zinc finger family protein |... 887 0.0
> AT4G20380.8 | Symbols: LSD1 | LSD1 zinc finger family protein
| chr4:11004517-11006788 FORWARD LENGTH=1248
Length=1248
Score = 887 bits (480), Expect = 0.0
Identities = 569/611 (93%), Gaps = 9/611 (1%)
Strand=Plus/Plus
Query 383 AGCGCACTCCAATCAGGTTGCCCATGCACCTTCCAATCAGGTTGCGCAGATCAATTGTGG 442
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 571 AGCGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGGTTGCGCAGATCAATTGTGG 630
Query 443 ACATTGTCGGACAACCCTCATGTATCCTTACGGTGCATCATCTGTTAAATGCGCTGTTTG 502
||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 631 GCATTGTCGGACGACCCTCATGTATCCTTACGGTGCATCATCCGTCAAATGCGCTGTTTG 690
Query 503 TCAATTCGTAACTAACGTTAATATGAGCAATGGAAGGGTACCTCTCCCAACTAACCGGCC 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 TCAATTCGTAACTAACGTTAATATGAGCAATGGAAGGGTACCTCTCCCAACTAACCGGCC 750
Query 563 AAATGGATCAGCTTGTCCCGGGAC-A-ATGCCCTCTTCAACACCACCCTCTCAGACCCAA 620
||||||| ||||||||||| | | || | ||||||||||||||||||||||||||
Sbjct 751 AAATGGAACAGCTTGTCCCCCCTCTACAT--CAACTTCAACACCACCCTCTCAGACCCAA 808
Query 621 ACCGTTGTTGTAGAAAACCCCATGTCCGTTGATGAAAGTGGAAAGTTGGTGACCAATGTT 680
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 809 ACCGTTGTTGTAGAAAACCCCATGTCCGTTGATGAAAGCGGAAAGTTGGTGAGCAATGTT 868
Query 681 GTTGTTGGTGTGACCACCGATAAAAAGTAACCAAGAATGAGTGAGATTTTAAATATCAAA 740
|||||||| ||||| || || ||||||||| |||||||||||||||| ||||| ||||||
Sbjct 869 GTTGTTGGAGTGACAACTGACAAAAAGTAATCAAGAATGAGTGAGATCTTAAAGATCAAA 928
Query 741 TCCAAATTCTTCATCTATTCCTGCGTTTGGTTTGTGCATATTACATACGCGGAAAAACTG 800
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 TCCAAATTCTTCCTCTATTCCTGCGTTTGGTTTGTGCATATTACATACGCGGAAAAACTG 988
Query 801 TATGTTTATATATCTCTTGACTCCTTTTTAACCTAAGA-AAAAGGCTGATCAGAATCTCT 859
|||||| |||||||||||||||||||||||||| |||| |||| ||| ||||||||||||
Sbjct 989 TATGTT-ATATATCTCTTGACTCCTTTTTAACCCAAGAGAAAAAGCTTATCAGAATCTCT 1047
Query 860 TGTTACTGCAATATTGGGGTTTATTCAAAGTTGAAGACACAAAGGTTTTTGCTCTAAGAA 919
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 1048 TGTTACTGCATTATTGGGGTTTATTCAAAGTTGAAGACACAA-GGTTTTTGCTCGAATAA 1106
Query 920 TCTTG-CATTCTTTTGCTCCATGGAACTTGACCTTCTCTTCTGTTTGTAGAGTTGTAAAA 978
| ||| |||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 1107 T-TTGGCATTCTTTTGCTCCATGGAACTTGACCTTCTCTTCTGTTTGTTGACTTCTAAAA 1165
Query 979 CTCCATTGGCC 989
|||||| ||||
Sbjct 1166 CTCCATCGGCC 1176
Score = 538 bits (291), Expect = 4e-152
Identities = 338/359 (94%), Gaps = 9/359 (3%)
Strand=Plus/Plus
Query 33 TGCATATCATCGCTCTAGATTTCGCTGGTTTTGGATTCGATTCCTCCCCCATCTTCAATC 92
|||||||||||||||||| |||||| ||||||||||||||||||| ||| ||| |||||
Sbjct 138 TGCATATCATCGCTCTAGCTTTCGCGGGTTTTGGATTCGATTCCTTACCCTTCTCCAATC 197
Query 93 ---GTTTTCGGCTTTGAATTGGATTTGGG-TTCGGTT-CAAAATCAGCTCTTTTTTGTT- 146
||||| |||||||||||||||||||| ||| ||| |||||||||||| ||||||||
Sbjct 198 GAAGTTTTTGGCTTTGAATTGGATTTGGGTTTC-GTTCCAAAATCAGCTC-TTTTTGTTA 255
Query 147 -TTATCAGATATGCAGGACCAGCTCGTGTGTCATGGTTGTAGGAATTTATTGATGTATCC 205
| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 256 ATCAGCAGATATGCAGGACCAGCTGGTGTGTCATGGTTGTAGGAATTTATTGATGTATCC 315
Query 206 TAGAGGAGCATCTAATGTGCGTTGTGCGTTATGTAACACTATCAACATGGTTCCTCCTCC 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 TAGAGGAGCATCTAATGTGCGTTGTGCGTTATGTAACACTATCAACATGGTTCCTCCTCC 375
Query 266 TCCTCCACCTCACGACATGGCACACATTATATGTGGTGGTTGTAGAACAATGCTTATGTA 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 TCCTCCACCTCACGACATGGCACACATTATATGTGGTGGTTGTAGAACAATGCTTATGTA 435
Query 326 TACGCGTGGGGCAAGTAGCGTAAGATGCTCTTGCTGTCAGACTACGAACCTTGTGCCAG 384
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 436 TACGCGTGGGGCTAGTAGCGTAAGATGCTCTTGCTGTCAAACTACGAACCTTGTGCCAG 494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48425717708
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5