BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492831
Length=323
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20362.1 | Symbols: | other RNA | chr4:10991615-10992159 RE... 377 3e-104
> AT4G20362.1 | Symbols: | other RNA | chr4:10991615-10992159
REVERSE LENGTH=416
Length=416
Score = 377 bits (204), Expect = 3e-104
Identities = 261/286 (91%), Gaps = 14/286 (5%)
Strand=Plus/Plus
Query 50 GTCTTGTTCTTGCTTCTAAACAAGATTCACTTCCAAGAGCTGGGAGGAGAATGAGGAGTT 109
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 78 GTCTTGTTCTTGCTTCTAAACAAGAATCACTCCCAAGAGCTGGGAGAAGAATGAGGAGTT 137
Query 110 ATCAAACAAATGGTGAGATCGATGCAGGCCCATCTTTCAGTGGCAGAGGTGGTGGTCGCA 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 ATCAAACAAATGGTGAGATCGATGCAGGCCCATCTTTCAGTGGCAGAGGTGGTGGTCGCA 197
Query 170 TTCCATAAGCTCTCTCTTTCCTCTTCTTGATTATCTCTTCACATTTCAACTTTCCT---- 225
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 198 TTCCATAAGCTCTCTCTTTCCTCTTCTTCATTATCTCTTCACATTTCAACTTTCCTCTTT 257
Query 226 --GTT-TTTAT---AT-T-CTGCAATTGCCCCTAGAATTGTTGATGTAATCTTCCCACTG 277
||| ||||| || | ||||||| | ||| |||||||||||||||||| ||||| |
Sbjct 258 AAGTTCTTTATGTTATATTCTGCAAT--CTCCTTGAATTGTTGATGTAATCTGCCCACAG 315
Query 278 TGGTTTCAAACTAAGTGATTGGTCGTTGAGTACCAAATTCAAATCA 323
|||||||||| ||||||||||||||||||||||||||| || ||||
Sbjct 316 TGGTTTCAAATTAAGTGATTGGTCGTTGAGTACCAAATCCACATCA 361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15030056951
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5