BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492835
Length=1096
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20330.1 | Symbols: | Transcription initiation factor TFIIE... 1557 0.0
AT4G21010.1 | Symbols: | Transcription initiation factor TFIIE... 676 0.0
AT4G24652.1 | Symbols: | Pseudogene of AT4G20330; transcriptio... 377 1e-103
> AT4G20330.1 | Symbols: | Transcription initiation factor TFIIE,
beta subunit | chr4:10982517-10984521 REVERSE LENGTH=1154
Length=1154
Score = 1557 bits (843), Expect = 0.0
Identities = 982/1049 (94%), Gaps = 9/1049 (1%)
Strand=Plus/Plus
Query 53 CGTTGTATTCTTTCTCCAAAGAAGATGGCTTTAAAGGAGCAGCTGGATAAATTCAACAAA 112
||||||||||||||||||| |||||||||| ||||||| ||||| |||||||||||||||
Sbjct 104 CGTTGTATTCTTTCTCCAAGGAAGATGGCTCTAAAGGAACAGCTAGATAAATTCAACAAA 163
Query 113 CAGCAAGTGAAATGCCAATCTACGCTATCGAGCATTGCTTCTTCAAGAGAAAGAACAG-G 171
||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| | |
Sbjct 164 CAGCAAGTGAAATGCCAATCTACTCTTTCGAGCATTGCTTCTTCCAGAGAAAGAAC-GAG 222
Query 172 GTCTTCGAGGCAGTCTGTGCCTTTGCCTGCGGCAATCA-GTCAGAAGAAGCCTGATGCAG 230
|||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 223 TTCTTCGAGGCAGAATGTGCCTTTGCCTGCGGCAATCACG-CAGAAGAAGCCTGATGCAG 281
Query 231 CTCCTGTCAAGTTTTCAAACGATACCGAGCGACTTCAGATTATTAACAACATTAGAAAAG 290
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 282 CTCCTGTCAAGTTTTCAAGCGATACCGAGCGACTTCAGAACATTAACAACATTAGAAAAG 341
Query 291 CTCCTGTTGGAGCTCAAATCAAGCGTGTCATTGATCTTCTCTTTGAGAAAAGGCTAGCCT 350
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 342 CTCCTGTTGGAGCTCAAATCAAGCGTGTCATTGATCTTCTCTATGAGAGAAGGCTAGCCT 401
Query 351 TAACTCCAGAGCAAATAAATGAATTGTGTCATGTTGATATGCATGCCAATAAGGCTGTTT 410
| || ||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||
Sbjct 402 TGACGCCAGAGCAAATAAATGAATGGTGTCATGTAGATATGCATGCTAATAAGGCTGTTT 461
Query 411 TTGATAGTTTGAGGAAGAATCCGAAAGCGCATTATGATGGAAGAAGGTTCTCTTATAAGG 470
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 462 TTGATAGTTTAAGGAAGAATCCGAAAGCACATTATGATGGAAGAAGGTTCTCTTATAAGG 521
Query 471 CTACACACGATGTCAAGGACAAGAACCAGCTTCTTTCGTTGGTGAGTAAATACCCTGATG 530
|||| |||||||| || || ||||||||||||||||| |||||||| ||||||| |||||
Sbjct 522 CTACGCACGATGTTAATGATAAGAACCAGCTTCTTTCATTGGTGAGAAAATACCTTGATG 581
Query 531 GGATTGCGGTGGTTGATCTCAAAGACGCTTACCCGAATGTAATAGAGGATTTGAAGGCTC 590
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 582 GGATTGCGGTGGTTGATCTCAAAGACGCTTACCCTAATGTAATGGAGGATTTGAAGGCTC 641
Query 591 TGAGTGCTTCAGAGGACATCTGGTTGCTATCAAATTCACAAGAGGACATTGCGTACCCAA 650
|||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 642 TGAGTGCTTCAGGGGACATCTACTTGCTATCAAATTCACAAGAGGACATTGCATACCCAA 701
Query 651 ATAATTTCAAGTGTGAGATTAAGGTTGATGACGAATTTAAAGCTCTATTCCGTGACATAG 710
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 ATGATTTCAAGTGTGAGATTAAGGTTGATGACGAATTTAAAGCTCTATTCCGTGACATAA 761
Query 711 ACATCCCGAGCGACATGCTGGACGTGGAGAAGGAGCTGCTGAAGATTGGTTTGAAGCCGG 770
||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 762 ACATCCCGAACGACATGCTGGACGTGGAGAAGGAGCTGCTGAAAATCGGTTTGAAGCCGG 821
Query 771 CGACAAACACTGCAGAGAGGAGAGCTGCTGCACAGACCCATGGCGTATCGAATAAACCGA 830
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
Sbjct 822 CGACAAACACTGCAGAGAGGAGAGCTGCTGCACAGACGCATGGCATATCGAATAAACC-A 880
Query 831 AA-GATAAGAAGAAGAAGAAACAAGAGATCAGCAAGAGAACCAAACTCACCAATGCCCAT 889
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 AAGGATAAGAAGAAGAAGAAACAAGAGATCAGCAAGAGAACCAAACTCACCAATGCCCAT 940
Query 890 CTTCCCGAGCTTTTCCAGAGCCTTAATGCCAGCAGTTCCCGGAACTGAACCTCATAAATG 949
||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 941 CTTCCCGAGCTTTTCCAGAACCTTAACGGCAGCAGTTCCCGGAACTGAACCTCATAAATG 1000
Query 950 GATGATCATGCGGTTCAAAACTCAAATTGATCCTGAATTTTCTTGTAATTGTAAT--T-G 1006
|||||||||||||||| ||| ||| ||||| |||||||||||||||||||||||| | |
Sbjct 1001 GATGATCATGCGGTTCTAAATTCATATTGAGCCTGAATTTTCTTGTAATTGTAATAATTG 1060
Query 1007 TTACGATCTTGAGCTTACAAATTACAATGGTTTTCATGTATTCTCACAACATTTGTTAGA 1066
|||| ||||| || ||||||||||||||| || |||||||||||||| ||||||| ||||
Sbjct 1061 TTACAATCTTTAGTTTACAAATTACAATGATTCTCATGTATTCTCACGACATTTGCTAGA 1120
Query 1067 AATATAGAATAAACACATTTATGAGTTGG 1095
|||||||||||||||||||| |||||||
Sbjct 1121 AATATAGAATAAACACATTTGGGAGTTGG 1149
Score = 93.5 bits (50), Expect = 4e-18
Identities = 64/70 (91%), Gaps = 3/70 (4%)
Strand=Plus/Plus
Query 1 TCTCTCGTCGATAAAGCAAAAAATCAAATCAAGCTTCTTCTTCGATCTTCTTCGTT-G-T 58
||| ||||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 4 TCTATCGTCGATAAAGCAAAAAATCAAATCAAGCTTCTTCTTCGATCTTCTTC-TTCGAT 62
Query 59 ATTCTTTCTC 68
||||| |||
Sbjct 63 CTTCTTCCTC 72
> AT4G21010.1 | Symbols: | Transcription initiation factor TFIIE,
beta subunit | chr4:11226286-11227363 REVERSE LENGTH=859
Length=859
Score = 676 bits (366), Expect = 0.0
Identities = 702/856 (82%), Gaps = 55/856 (6%)
Strand=Plus/Plus
Query 77 ATGGCTTTAAAGGAGCAGCTGGATAAATTCAACAAACAGCAAGTGAAATGCCAATCTACG 136
|||||||| ||||||||| ||||| ||||| |||||||||| ||||||||||||||||
Sbjct 1 ATGGCTTTGCGGGAGCAGCTTGATAAGTTCAATAAACAGCAAGAGAAATGCCAATCTACG 60
Query 137 CTATCGAGCATTGCTTCTTCAAGAGAAAGAACAGGGTC-TTCGAGGCAGTCTGTGCCTTT 195
|| ||||||||| ||||||| |||||| || | ||||| | | || | | |
Sbjct 61 CTTTCGAGCATTTCTTCTTC------AAGAAC-GGCCCTTTCGA-G-A-TC-AT-AC-GT 107
Query 196 GCCTGCGGCAATCAGTCAG-AAGAAGCCTGATGCAGCTCCTGTCAAGTTTTCA-AACGAT 253
|||||| |||| || ||| |||||||| ||| | || || |||||||||| || |
Sbjct 108 GCCTGCAGCAA-CAACCAGTCAGAAGCCTAATGTATTTCGTGGCAAGTTTTCAGAA-AAC 165
Query 254 ACCGAGCGACTTCAG-ATTATTAACAACATTAGAAA-AGCTCCTGTTGGAGCTCAAATCA 311
|| ||| ||||||| | |||| |||||| ||||| || | |||||||||||||||| |
Sbjct 166 ACAAAGCAACTTCAGCA-CATTACCAACATAAGAAACAG-TGCTGTTGGAGCTCAAATGA 223
Query 312 AGCGTGTCATTGATCTTCTCTTTGAGAAAAGGCTAGCCTTA-ACTCCAGAGCAAATAAAT 370
|| ||||||||||||| | ||| ||| |||||||| |||| || ||||||||||||||
Sbjct 224 AGATTGTCATTGATCTTTTGTTTAAGACAAGGCTAG-CTTATACGGCAGAGCAAATAAAT 282
Query 371 GAA--TTGTGTCATGTTGATATGCATGCCAATAAGGCTGTTTTTGATAGTTTGAGGAAGA 428
||| |||| | | |||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 283 GAAGCTTGT-T-ACGTTGATATGCATAACAACAAGGCTGTTTTTGATAGTTTGAGGAAGA 340
Query 429 ATCCGAAAGCGCATTATGATGGAAGAAGGTTCTCTTATAAGGCTACACACGATGTCAAGG 488
|||| |||| ||||||||| |||||||||||||||||||||||||| ||| || ||||||
Sbjct 341 ATCCTAAAGTGCATTATGACGGAAGAAGGTTCTCTTATAAGGCTACGCACAATATCAAGG 400
Query 489 ACAAGAACCAGCTTCTTTCGTTGGTGAGTAAAT-ACCCTGATGG-GATTGCGGTGGT-TG 545
||||||| || ||||||||||| |||| ||||| | | | || ||||| ||| | ||
Sbjct 401 ACAAGAAGCAACTTCTTTCGTTTGTGAATAAATCAGA-TAA-GGTGATTGATGTG-TCTG 457
Query 546 ATCTCAAAGACGCTTACCCGAATGTAATAGAGGATTTGAAGGCTCTGAG-TGCTTCAG-A 603
|||||||||| ||||||||||||||||| || ||||||||| |||| | | |||||| |
Sbjct 458 ATCTCAAAGATGCTTACCCGAATGTAATGGAAGATTTGAAGTCTCTAAAAT-CTTCAGGA 516
Query 604 GGA--CATCTGGTTGCTATCAAA---T--T-CACAAGAGGACATTGCGTACCCAAATAAT 655
| | | |||||||||||||||| | | || |||||| || || ||| | |||||||
Sbjct 517 GAAATCTTCTGGTTGCTATCAAACACTGATTCAAAAGAGGGCACTGTGTATCGAAATAAT 576
Query 656 TTCAAGTGTGAGATTAAGGTTGATGACGAATTTAAAGCTCTATTCCGTGACATAGACATC 715
| ||| | || | | |||||||||| |||||||||||||||||||||| ||||
Sbjct 577 ATGGAGTATCCGA--A-GATTGATGACGAGCTTAAAGCTCTATTCCGTGACAT---CATC 630
Query 716 CCGAGCGACATGCTGGACGTGGAGAAGGAGCTGCTGAAGATTGGTTTGAAGCCGGCGACA 775
|||||||||||||| || |||||||||||| |||||||||||||||||||||| || |||
Sbjct 631 CCGAGCGACATGCTTGAGGTGGAGAAGGAGTTGCTGAAGATTGGTTTGAAGCCAGCCACA 690
Query 776 AACACTGCAGAGAGGAGAGCTGCTGCACAGAC-CCATGGCGTATCGAATAAACCGAAAG- 833
|||| |||||||||||||||||||| |||| | ||||||||||||||||||||| ||||
Sbjct 691 AACATTGCAGAGAGGAGAGCTGCTGAACAG-CTCCATGGCGTATCGAATAAACC-AAAGG 748
Query 834 ATAAGAAGAAGAAGAAACAAGAGATCAGCAAGAGAACCAAACTCACCAATGCCCATCTTC 893
||||||||||||||||| ||||||||| ||| |||||||||||||||||| ||||| | |
Sbjct 749 ATAAGAAGAAGAAGAAAAAAGAGATCACCAACAGAACCAAACTCACCAATTCCCATATGC 808
Query 894 CCGAGCTTTTCCAGAG 909
|||||| ||||||||
Sbjct 809 TCGAGCTCTTCCAGAG 824
> AT4G24652.1 | Symbols: | Pseudogene of AT4G20330; transcription
initiation factor-related | chr4:12722395-12722952 REVERSE
LENGTH=360
Length=360
Score = 377 bits (204), Expect = 1e-103
Identities = 313/363 (86%), Gaps = 17/363 (5%)
Strand=Plus/Plus
Query 237 TCAAGTTTTCAAACGATACCG-AGCGACTTCAGATTATTAACAACATTAGAAAAGCTCCT 295
|||||||||||||||||| || ||||||||||| | ||||||| ||||||| |||||| |
Sbjct 2 TCAAGTTTTCAAACGATA-CGAAGCGACTTCAGCTCATTAACAGCATTAGAGAAGCTCAT 60
Query 296 GTTGGAG----CTCAAATCAAGCGTGTCATTGATCTTCTCTTTGAGAAAAGGCTAGCCTT 351
||||||| |||||||||||| |||||||||||||||| |||| | ||||||||||||
Sbjct 61 GTTGGAGCTCACTCAAATCAAGCATGTCATTGATCTTCTCATTGATAGAAGGCTAGCCTT 120
Query 352 AACTCCAGAGCAAATAAATG-A-ATTG--TGT-CATGTTGATATGCATGCCAATAAGGCT 406
||| || ||||| ||||||| | | || | | |||||||||||||| |||||||||||
Sbjct 121 AACACCCGAGCATATAAATGAAGAGTGATTATATATGTTGATATGCATTCCAATAAGGCT 180
Query 407 GTTTTTGATAGTTTGAGGAAGAATCCGAAAGCGCATTATGATGGAAGAAGGTTCTCTTAT 466
|||||||||||||||||||||||||||| | ||||||||| |||| ||| ||||||||
Sbjct 181 GTTTTTGATAGTTTGAGGAAGAATCCGATATTGCATTATGACGGAACAAGATTCTCTTAC 240
Query 467 AAGGCTACAC-A-CGATGTCAAGGACAAGA-ACCAGCTTCTTTCGTTGGTGAGTAAATAC 523
|||| || || | ||||||||||||||||| || || |||||||||||||| || |||||
Sbjct 241 AAGG-TA-ACTAACGATGTCAAGGACAAGAGAC-AGGTTCTTTCGTTGGTGGGTGAATAC 297
Query 524 CCTGATGGGATTGCGGTGGTTGATCTCAAAGACGCTTACCCGAATGTAATAGAGGATTTG 583
|||||||||||| ||| |||| ||||||||||||||| |||||||| || |||||||||
Sbjct 298 ACTGATGGGATTGTGGTAGTTGTTCTCAAAGACGCTTAGCCGAATGTCATGGAGGATTTG 357
Query 584 AAG 586
|||
Sbjct 358 AAG 360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53714583150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5