BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492840 Length=1520 Score E Sequences producing significant alignments: (Bits) Value AT4G20310.2 | Symbols: | Peptidase M50 family protein | chr4:1... 1546 0.0 > AT4G20310.2 | Symbols: | Peptidase M50 family protein | chr4:10961614-10963948 FORWARD LENGTH=1750 Length=1750 Score = 1546 bits (837), Expect = 0.0 Identities = 1034/1125 (92%), Gaps = 29/1125 (3%) Strand=Plus/Plus Query 28 AGATTCCGAAGAGATCGCCTCGCCGGCGGCGATAACATTGAAAGCGAAGCCTCATGCTGC 87 |||||||||||||||| |||| |||||||||| |||||||||| ||||||||| || ||| Sbjct 65 AGATTCCGAAGAGATCACCTCACCGGCGGCGAGAACATTGAAAACGAAGCCTCGTGTTGC 124 Query 88 TACTGCGATTTCAAAATCTCGAATTTCAACGAACCCATCTTCCGTCTCGGACGACGATTC 147 || || || ||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 125 TATTGTGACCTCAAAATCTCGAATTTCAACGAACCCATCTTCCGTTTAGGACGACGATTC 184 Query 148 TCCGGAGTGATGAAAGTCTGGTTCTCAATCGGACTCGGATTCGGCGTCGCTTCTCTAATC 207 |||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 185 TCCGGAGTTTTGAAAGTCTGGTTCTCAATCGGACTAGGATTCGGCGTCGCTTCTCTGATC 244 Query 208 CTCGTCACCGTCTTCCTGCTCCTTCAGTTTCATC-CAAACCCATTATTCTCCAATCGTCT 266 ||||||||||||||||| |||||||||||||| | | ||||| ||||||||||||||||| Sbjct 245 CTCGTCACCGTCTTCCTTCTCCTTCAGTTTCA-CTCTAACCCTTTATTCTCCAATCGTCT 303 Query 267 CTCTTCCGCCGTATTTGGATTCTCTCCTTCCACGCGTGTATCATTATCCGGCATTGCCTA 326 | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 304 CACTTCCGCCGTATTTGGATTCTCTCCTTCCACGCGTGTATCATTATCAGGCATTGCCTA 363 Query 327 TGT-GTTAGTTTCCACTGTCATTACTGTTTCAGTTCATGAACTTGGTCATGCTCTTGCTG 385 ||| || || |||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 364 TGTACTT-GTCTCCACTGTCATTACAGTTTCAGTTCATGAACTTGGTCACGCTCTTGCTG 422 Query 386 CTGCTAGTGAAGGAATACAGATGGAATACATTGCCGTTTTCATTGCAGCTATATTTCCGG 445 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 423 CTGCTAGTGAAGGAATACAGATGGAATACATTGCCGTTTTCATTGCAGCTATCTTTCCGG 482 Query 446 GAGGTCTCGTAGCTTTTGATAATGATGTCTTGCAATCACTTCCAAGCTTTAATGCTCTTC 505 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 483 GTGGTCTTGTAGCTTTTGATAATGATGTCTTGCAATCACTTCCAAGCTTTAATGCTCTTC 542 Query 506 GTATTTACTCTGCCGGTATTTGGCATAATGCTGTGTTATGTGCACTCTGCGTGTTCGCGT 565 ||||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||| | Sbjct 543 GTATTTACTGTGCCGGTATTTGGCATAATGCAGTGTTCTGTGCACTCTGTGTGTTCGCTT 602 Query 566 TGTTTTTATTGCCTGTTATGTTTTCTCCGTTCTACAAACACGGTGAAAGCCTCACGGTTG 625 ||||| | |||||||||||||| || || ||||||||||||||||||||||||||||||| Sbjct 603 TGTTTCTCTTGCCTGTTATGTTGTCACCTTTCTACAAACACGGTGAAAGCCTCACGGTTG 662 Query 626 TGGATGTGCCTTCTATGTCGCCATTGTTTGGTTACTTGTCTCCTGGAGATGTTATTGTGT 685 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 663 TGGATGTGCCTTCTGTGTCGCCATTGTTTGGTTACTTGTCTCCTGGAGATGTTATTGTGT 722 Query 686 CGTTGGATGGCATACAAGTCCATAAACCTAGTGAATGGCTTGAACTGGCAGCGATTTTGG 745 |||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| Sbjct 723 CGTTGGATGGCATACAAGTCCACAAACCTAGTGAATGGCTTGAATTGGCAGCAATTTTGG 782 Query 746 ATAAGGAAAACAGTGAAAA-ATCAAATGCTTCCTTGTATCTTGGAGGTTCAAGGAGATTT 804 |||||||||| ||| |||| ||| |||| ||||||||| ||||||||||||||||||||| Sbjct 783 ATAAGGAAAATAGT-AAAACATCGAATGGTTCCTTGTACCTTGGAGGTTCAAGGAGATTT 841 Query 805 CATCACGGGAAGGGTTACTGTGTCCCTATCTCTCTGATTGAAGAAGGGTTGAAA-GGAAA 863 ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 842 CATCACGGGAAGGGTTACTGTGTCCCTATCTCTCTGATTGAAGAAGGGTACAAAGGGAAA 901 Query 864 TATGGTTGAGAACCAATTTGTTTGTCCCGGTGATCTCACTGCATTTCGAACAATGCCATG 923 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 902 -ATGGTTGAGAACCAATTTGTTTGTCCCGGTGATCTCACTGCATTTCGAACAATGCCATG 960 Query 924 CTCAAATGCAGCCCTGAGAGAGGTTTCTGTTTGTTTGGATGCAAAGGATATCGTCAAGCT 983 ||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 961 CTCAAATGCAGCCATAAGAGAGGTATCTGTTTGTTTGGATGCAAAGGATATCGTCAAGCT 1020 Query 984 T-AGCAAATGTGGTGATGGATGGGTGACAACATCAGACACCGATAGCAAAAGTGACTGCG 1042 | | |||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 1021 TCAA-AAATGTGGTGATGGATGGGTGACAACATCAGACACCGATAACCAAAGTGACTGCG 1079 Query 1043 TATGTCCACAG-----C--------A-A-----TGCAATCTCCAGGCGTATCATGGACAG 1083 ||||||||||| | | | |||||||||||||||||| ||||||| Sbjct 1080 TATGTCCACAGGGTGACTTGTGCTTACAAGCAATGCAATCTCCAGGCGTATTGTGGACAG 1139 Query 1084 AGATCACCTATaaaaaaaaCTCATCACAGAATTGTTCTAGACTTG 1128 ||||||| ||||||| || ||| |||||| |||| |||||||||| Sbjct 1140 AGATCACTTATAAAAGAACCTCGTCACAGGATTGCTCTAGACTTG 1184 Score = 494 bits (267), Expect = 1e-138 Identities = 299/315 (95%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 1203 GTTCATTTAACCGCATACCAACCTCGTTGGCTATTTAACTTCTTTGGAAAGTCCTTCCCG 1262 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1184 GTTCATTTAACCGCATATCAACCTCGTTGGCTATTTAACTTCTTTGGAAAGTCCTTCCCG 1243 Query 1263 GATATTCTAGAAAGAAGCTTGACCTGCACATTCCATGTCTCTCTTGCGCTAGTTCTTCTG 1322 |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 1244 AATATCCTAGAAAGAAGCTTGACTTGCACATTCCATGTCTCTCTTGCACTAGTTCTTCTG 1303 Query 1323 AACAGCTTACCGGTGTATTACCTTGATGGTGAATCAATTTTAGAGTCCAGTCTCCAGTCT 1382 ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 1304 AACAGCTTACCCGTGTATTACCTTGATGGTGAATCCATTTTAGAGTCAAGTCTCCAGTCT 1363 Query 1383 TTTACTTGGTTAAGCCCAAGAAAGAAGAAAAAAGCTCTTCAAGTATGTCTTGTTGGAGGC 1442 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||| || Sbjct 1364 TTTACTTGGTTAAGCCCAAGAAAGAAGAAGAAAGCTCTTCAAGTTTGCCTTGTTGGTGGG 1423 Query 1443 AGCCTCCTCTCTTTCCTCGCCTTCTTCAGAATCTTCCTCGTCGGTTTACCTCTGAGCCAC 1502 || |||||||||||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 1424 AGTCTCCTCTCTTTCCTCGCCTTCTTCAGAATCTTCCTCCTCGGTTTACCTCTGAGCCGC 1483 Query 1503 CGATGGTAAATGCCC 1517 ||||||||||||||| Sbjct 1484 CGATGGTAAATGCCC 1498 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74999614230 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5