BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492840
Length=1520
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20310.2 | Symbols: | Peptidase M50 family protein | chr4:1... 1546 0.0
> AT4G20310.2 | Symbols: | Peptidase M50 family protein | chr4:10961614-10963948
FORWARD LENGTH=1750
Length=1750
Score = 1546 bits (837), Expect = 0.0
Identities = 1034/1125 (92%), Gaps = 29/1125 (3%)
Strand=Plus/Plus
Query 28 AGATTCCGAAGAGATCGCCTCGCCGGCGGCGATAACATTGAAAGCGAAGCCTCATGCTGC 87
|||||||||||||||| |||| |||||||||| |||||||||| ||||||||| || |||
Sbjct 65 AGATTCCGAAGAGATCACCTCACCGGCGGCGAGAACATTGAAAACGAAGCCTCGTGTTGC 124
Query 88 TACTGCGATTTCAAAATCTCGAATTTCAACGAACCCATCTTCCGTCTCGGACGACGATTC 147
|| || || ||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 125 TATTGTGACCTCAAAATCTCGAATTTCAACGAACCCATCTTCCGTTTAGGACGACGATTC 184
Query 148 TCCGGAGTGATGAAAGTCTGGTTCTCAATCGGACTCGGATTCGGCGTCGCTTCTCTAATC 207
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 185 TCCGGAGTTTTGAAAGTCTGGTTCTCAATCGGACTAGGATTCGGCGTCGCTTCTCTGATC 244
Query 208 CTCGTCACCGTCTTCCTGCTCCTTCAGTTTCATC-CAAACCCATTATTCTCCAATCGTCT 266
||||||||||||||||| |||||||||||||| | | ||||| |||||||||||||||||
Sbjct 245 CTCGTCACCGTCTTCCTTCTCCTTCAGTTTCA-CTCTAACCCTTTATTCTCCAATCGTCT 303
Query 267 CTCTTCCGCCGTATTTGGATTCTCTCCTTCCACGCGTGTATCATTATCCGGCATTGCCTA 326
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 304 CACTTCCGCCGTATTTGGATTCTCTCCTTCCACGCGTGTATCATTATCAGGCATTGCCTA 363
Query 327 TGT-GTTAGTTTCCACTGTCATTACTGTTTCAGTTCATGAACTTGGTCATGCTCTTGCTG 385
||| || || |||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 364 TGTACTT-GTCTCCACTGTCATTACAGTTTCAGTTCATGAACTTGGTCACGCTCTTGCTG 422
Query 386 CTGCTAGTGAAGGAATACAGATGGAATACATTGCCGTTTTCATTGCAGCTATATTTCCGG 445
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 423 CTGCTAGTGAAGGAATACAGATGGAATACATTGCCGTTTTCATTGCAGCTATCTTTCCGG 482
Query 446 GAGGTCTCGTAGCTTTTGATAATGATGTCTTGCAATCACTTCCAAGCTTTAATGCTCTTC 505
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GTGGTCTTGTAGCTTTTGATAATGATGTCTTGCAATCACTTCCAAGCTTTAATGCTCTTC 542
Query 506 GTATTTACTCTGCCGGTATTTGGCATAATGCTGTGTTATGTGCACTCTGCGTGTTCGCGT 565
||||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||| |
Sbjct 543 GTATTTACTGTGCCGGTATTTGGCATAATGCAGTGTTCTGTGCACTCTGTGTGTTCGCTT 602
Query 566 TGTTTTTATTGCCTGTTATGTTTTCTCCGTTCTACAAACACGGTGAAAGCCTCACGGTTG 625
||||| | |||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 603 TGTTTCTCTTGCCTGTTATGTTGTCACCTTTCTACAAACACGGTGAAAGCCTCACGGTTG 662
Query 626 TGGATGTGCCTTCTATGTCGCCATTGTTTGGTTACTTGTCTCCTGGAGATGTTATTGTGT 685
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TGGATGTGCCTTCTGTGTCGCCATTGTTTGGTTACTTGTCTCCTGGAGATGTTATTGTGT 722
Query 686 CGTTGGATGGCATACAAGTCCATAAACCTAGTGAATGGCTTGAACTGGCAGCGATTTTGG 745
|||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||
Sbjct 723 CGTTGGATGGCATACAAGTCCACAAACCTAGTGAATGGCTTGAATTGGCAGCAATTTTGG 782
Query 746 ATAAGGAAAACAGTGAAAA-ATCAAATGCTTCCTTGTATCTTGGAGGTTCAAGGAGATTT 804
|||||||||| ||| |||| ||| |||| ||||||||| |||||||||||||||||||||
Sbjct 783 ATAAGGAAAATAGT-AAAACATCGAATGGTTCCTTGTACCTTGGAGGTTCAAGGAGATTT 841
Query 805 CATCACGGGAAGGGTTACTGTGTCCCTATCTCTCTGATTGAAGAAGGGTTGAAA-GGAAA 863
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 842 CATCACGGGAAGGGTTACTGTGTCCCTATCTCTCTGATTGAAGAAGGGTACAAAGGGAAA 901
Query 864 TATGGTTGAGAACCAATTTGTTTGTCCCGGTGATCTCACTGCATTTCGAACAATGCCATG 923
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 -ATGGTTGAGAACCAATTTGTTTGTCCCGGTGATCTCACTGCATTTCGAACAATGCCATG 960
Query 924 CTCAAATGCAGCCCTGAGAGAGGTTTCTGTTTGTTTGGATGCAAAGGATATCGTCAAGCT 983
||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 961 CTCAAATGCAGCCATAAGAGAGGTATCTGTTTGTTTGGATGCAAAGGATATCGTCAAGCT 1020
Query 984 T-AGCAAATGTGGTGATGGATGGGTGACAACATCAGACACCGATAGCAAAAGTGACTGCG 1042
| | |||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1021 TCAA-AAATGTGGTGATGGATGGGTGACAACATCAGACACCGATAACCAAAGTGACTGCG 1079
Query 1043 TATGTCCACAG-----C--------A-A-----TGCAATCTCCAGGCGTATCATGGACAG 1083
||||||||||| | | | |||||||||||||||||| |||||||
Sbjct 1080 TATGTCCACAGGGTGACTTGTGCTTACAAGCAATGCAATCTCCAGGCGTATTGTGGACAG 1139
Query 1084 AGATCACCTATaaaaaaaaCTCATCACAGAATTGTTCTAGACTTG 1128
||||||| ||||||| || ||| |||||| |||| ||||||||||
Sbjct 1140 AGATCACTTATAAAAGAACCTCGTCACAGGATTGCTCTAGACTTG 1184
Score = 494 bits (267), Expect = 1e-138
Identities = 299/315 (95%), Gaps = 0/315 (0%)
Strand=Plus/Plus
Query 1203 GTTCATTTAACCGCATACCAACCTCGTTGGCTATTTAACTTCTTTGGAAAGTCCTTCCCG 1262
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 GTTCATTTAACCGCATATCAACCTCGTTGGCTATTTAACTTCTTTGGAAAGTCCTTCCCG 1243
Query 1263 GATATTCTAGAAAGAAGCTTGACCTGCACATTCCATGTCTCTCTTGCGCTAGTTCTTCTG 1322
|||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1244 AATATCCTAGAAAGAAGCTTGACTTGCACATTCCATGTCTCTCTTGCACTAGTTCTTCTG 1303
Query 1323 AACAGCTTACCGGTGTATTACCTTGATGGTGAATCAATTTTAGAGTCCAGTCTCCAGTCT 1382
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1304 AACAGCTTACCCGTGTATTACCTTGATGGTGAATCCATTTTAGAGTCAAGTCTCCAGTCT 1363
Query 1383 TTTACTTGGTTAAGCCCAAGAAAGAAGAAAAAAGCTCTTCAAGTATGTCTTGTTGGAGGC 1442
||||||||||||||||||||||||||||| |||||||||||||| || |||||||| ||
Sbjct 1364 TTTACTTGGTTAAGCCCAAGAAAGAAGAAGAAAGCTCTTCAAGTTTGCCTTGTTGGTGGG 1423
Query 1443 AGCCTCCTCTCTTTCCTCGCCTTCTTCAGAATCTTCCTCGTCGGTTTACCTCTGAGCCAC 1502
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1424 AGTCTCCTCTCTTTCCTCGCCTTCTTCAGAATCTTCCTCCTCGGTTTACCTCTGAGCCGC 1483
Query 1503 CGATGGTAAATGCCC 1517
|||||||||||||||
Sbjct 1484 CGATGGTAAATGCCC 1498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74999614230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5