BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492844
Length=3263
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20270.1 | Symbols: BAM3 | Leucine-rich receptor-like protei... 5110 0.0
> AT4G20270.1 | Symbols: BAM3 | Leucine-rich receptor-like protein
kinase family protein | chr4:10949661-10953083 FORWARD LENGTH=3299
Length=3299
Score = 5110 bits (2767), Expect = 0.0
Identities = 3088/3244 (95%), Gaps = 18/3244 (1%)
Strand=Plus/Plus
Query 1 CCCAAAACATTAAAGCATGATGATGTCTAATGATGATGATCTTCTTCGATCCATTTCTCT 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 CCCAAAACATTAAAGCATGATGATGTCTAATGATGATGATCTTCTTCGTTCCATTTCTCT 60
Query 61 AAAATTTTGGGATTTCTGCGAAGACCCTTCTTCTCTTTCACTTCTCTGAACTTCAAGATT 120
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 AAATTTTTGGGATTTCTGCGAAGACCCTTCTTCTCTTTCTCTTCTCTGAACTTCAAGATT 120
Query 121 CGTGTCGGACAAAtttttatttttatttttCTGATGTTACAATGGCAGACAAGatcttca 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGTGTCGGACAAATTTTTGTTTTTATTTTTCTGATGTTACAATGGCAGACAAGATCTTCA 180
Query 181 ctttcttcttaatcttgtcttcgatctctcctctcttatgctcttctttgatctcacctc 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTTCTTCCTAATCTTGTCTTCGATCTCTCCTCTCTTATGCTCTTCTTTGATCTCACCTC 240
Query 241 ttaatctctcACTAATTAGACAAGCAAAAGTCCTTATCTCTCTAAAGCAAAGCTTTGATT 300
||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 241 TTAATCTCTCACTTATTAGACAAGCAAATGTCCTTATCTCTCTAAAGCAAAGTTTTGATT 300
Query 301 CCTATGATCCTTCTCTTGATTCATGGAACATTCCAAATTTCAATTCTCTCTGTTCTTGGA 360
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 301 CCTATGATCCTTCTCTTGATTCATGGAACATTCCAAATTTCAACTCTCTATGTTCTTGGA 360
Query 361 CTGGTGTTTCTTGTGACAGCTTGAATCAGTCCATTACTCGTCTAGACATCTCTAATCTCA 420
|||||||||||||||||| |||||||||||| ||||||||||||||| | ||||||||||
Sbjct 361 CTGGTGTTTCTTGTGACAACTTGAATCAGTCTATTACTCGTCTAGACCTATCTAATCTCA 420
Query 421 ACATCTCCGGGACTCTCTCGCCGGAAATCTCCCGTCTTTCGCCGTCTCTCGTTTTTCTTG 480
|||||||||| ||| |||| |||||||| || |||||||||||||| || ||||||||||
Sbjct 421 ACATCTCCGGCACTATCTCTCCGGAAATATCTCGTCTTTCGCCGTCACTTGTTTTTCTTG 480
Query 481 ACGTTTCTTCAAACAGTTTCTCCGGTCAGCTTCCTAAAGAGATCTATGAGCTCTCTA-GC 539
|| ||||||| ||||||||||||||| |||||||||||||||||||||||||||| | ||
Sbjct 481 ACATTTCTTCTAACAGTTTCTCCGGTGAGCTTCCTAAAGAGATCTATGAGCTCTC-AGGC 539
Query 540 CTCGAAGTGTTAAACATCTCTAGCAATGTTTTTGAAGGAGAGCTTGAGTCACGTGGACTC 599
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||
Sbjct 540 CTCGAAGTGTTAAACATCTCTAGCAATGTTTTTGAAGGAGAGCTGGAGACACGTGGGTTC 599
Query 600 AGTCAAATGACGCAGCTTGTGACTCTTGACGCTTACGACAACAGCTTCAACGGATCACTT 659
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGTCAAATGACTCAGCTTGTGACTCTTGACGCTTACGACAACAGCTTCAACGGATCACTT 659
Query 660 CCTCCCAGTCTGACCACACTCACTCGTCTCGAGCACTTAGATCTTGGAGGAAACTACTTC 719
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CCTCTGAGTCTAACCACACTCACTCGTCTCGAGCACTTAGATCTTGGAGGAAACTACTTC 719
Query 720 GACGGTGAGATCCCTAGAAGCTATGGAAGTTTCTTGTGTCTCAAGTTTCTTTCTTTATCT 779
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 720 GACGGTGAGATCCCTAGAAGCTATGGAAGTTTCTTGAGTCTCAAGTTTCTTTCTTTATCT 779
Query 780 GGTAATGATCTCCGTGGGAGAATCCCTAACGAGCTAGGGAACATCACAACTTTGGTACAG 839
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 780 GGTAATGATCTCCGTGGGAGAATCCCTAACGAGCTAGCGAACATCACGACTTTGGTACAG 839
Query 840 CTTTACTTAGGTTACTTCAACGATTACCGCGGCGGGATACCTGCAGATTTCGGGAGATTG 899
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 840 CTTTACTTAGGTTACTACAACGATTACCGCGGTGGGATACCTGCAGATTTCGGGAGATTG 899
Query 900 ATCAATCTTGTTCATTTGGATTTAGCTAATTGCAGCTTGAAAGGATCAATTCCTGCAGAA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 ATCAATCTTGTTCATTTGGATTTAGCTAATTGCAGCTTGAAAGGATCAATTCCTGCAGAA 959
Query 960 TTGGGGAATCTCAAGAACTTGGAGGTTCTGTTTCTTCAGACCAATGAGCTTACAGGCTCT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TTGGGGAATCTCAAGAACTTGGAGGTTCTGTTTCTTCAGACCAATGAGCTTACAGGCTCT 1019
Query 1020 GTTCCTCGAGAGTTAGGGAACATGACAAGCCTCAAGACTCTTGATCTCTCTAACAACTTT 1079
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1020 GTTCCTCGAGAGTTAGGGAACATGACAAGCCTCAAGACTCTTGATCTCTCCAACAACTTT 1079
Query 1080 CTAGAAGGAGAGATTCCTCTGGAGCTATCTGGTCTTCAAAAGCTTCAGTTGTTTAATCTC 1139
|| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 1080 CTTGAAGGAGAGATTCCTCTAGAGCTATCTGGACTTCAAAAGCTTCAGTTGTTTAACCTC 1139
Query 1140 TTTCT-CAACAGATTACACGGCGGGATCCCTGAGTTCGTATCTCAACTTCCTGATCTGCA 1198
|| || ||||||| ||||||||| ||||||||||||||||||| | ||||||||||||||
Sbjct 1140 TT-CTTCAACAGACTACACGGCGAGATCCCTGAGTTCGTATCTGAGCTTCCTGATCTGCA 1198
Query 1199 AATTCTCAAGCTTTGGCACAACAATTTCACCGGAACGATTCCTCCGAAACTCGGAACAAA 1258
||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||
Sbjct 1199 AATACTCAAGCTTTGGCACAACAATTTCACCGGAAAGATTCCTTCGAAACTCGGATCAAA 1258
Query 1259 CGGGAAGTTGATCGAGATCGATTTGTCTACCAATAAGCTCACAGGTTTGATCCCTGAGTC 1318
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1259 CGGGAACTTGATCGAGATCGATTTGTCTACCAATAAACTCACAGGTTTGATCCCTGAGTC 1318
Query 1319 GCTTTGTTTCGGAAGAAGACTGAAGATTCTCATTCTATTCAACAACTTCTTGTTTGGTCC 1378
|| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 1319 ACTCTGTTTCGGAAGAAGACTAAAGATTCTCATTCTCTTCAACAACTTCTTGTTCGGTCC 1378
Query 1379 TCTCCCTGAAGATCTTGGCGAATGTGAGCCGCTATGGAGATTCCGTCTTGGACAGAACTT 1438
||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||
Sbjct 1379 TCTCCCTGAAGATCTTGGCCAATGTGAACCGCTATGGAGATTCCGTCTCGGACAGAACTT 1438
Query 1439 TCTGACAAGTA-GATTGCCAAAGGGTTTGATTTATTTGCCGAATCTTGAGCTTCTTGAGC 1497
||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1439 TCTGACAAGTAAG-TTGCCAAAGGGTTTGATTTATTTGCCGAATCTTTCGCTTCTTGAGC 1497
Query 1498 TTCAAAACAACTTCTTGACTGGAGAAATTCCCGAAGAAGAGGCGGGAAATGCGCGGTTTT 1557
||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1498 TTCAAAACAACTTTTTGACTGGAGAAATCCCCGAAGAAGAGGCGGGAAATGCGCAGTTTT 1557
Query 1558 CGAGCCTTACTCAGATCAATTTGTCCAACAACCGGTTATCCGGACCTATTCCTGGTTCAA 1617
|||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||
Sbjct 1558 CGAGCCTTACTCAGATCAATCTGTCCAACAACAGGTTATCCGGACCGATTCCTGGTTCAA 1617
Query 1618 TCAGAAACCTCAGAAGCCTTCAGATTCTT-TTCCTTGGCGGGAACCGGTTATCGGGACAG 1676
||||||||||||||||||||||||||||| ||| | || | ||||||||||||||||||
Sbjct 1618 TCAGAAACCTCAGAAGCCTTCAGATTCTTCTTC-TCGGTGCAAACCGGTTATCGGGACAG 1676
Query 1677 ATCCCCGGTGAAATCGGAACTTTGAAGAGTCTTTTCAAGATTGACATGAGCAGAAACAAC 1736
||||| || |||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1677 ATCCCTGGCGAAATCGGAAGTTTGAAGAGTCTTCTCAAGATTGACATGAGCAGAAACAAC 1736
Query 1737 TTCTCAGGCAAGTTTCCTCCTGAGTTTGGTGATTGTC-TGTCACTCACATACTTAGATTT 1795
||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||
Sbjct 1737 TTCTCAGGCAAGTTTCCTCCTGAGTTTGGTGATTG-CATGTCACTCACATATTTAGATTT 1795
Query 1796 GAGTCATAACCAGATCTCCGGTCAGATTCCGGTTCAGATTTCACAGATTCGGATTCTAAA 1855
|||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1796 GAGTCACAACCAGATTTCCGGTCAGATTCCGGTTCAGATATCGCAGATTCGGATTCTAAA 1855
Query 1856 CTATCTGAACGTTTCTTGGAATTTATTAAACCAAAGCTTTCCCAACGAACTCGGATACAT 1915
||||||||| ||||||||||||| || ||||||||| ||||||||||||||||||||||
Sbjct 1856 CTATCTGAATGTTTCTTGGAATTCCTTTAACCAAAGCCTTCCCAACGAACTCGGATACAT 1915
Query 1916 GAAGAGCTTAACATCAGCAGATTTCTCACACAACAACTTCTCCGGTTCAGTGCCAACTTC 1975
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1916 GAAGAGTTTAACATCAGCAGATTTCTCACACAACAACTTCTCCGGTTCAGTACCAACTTC 1975
Query 1976 AGGGCAATTCTCTTACTTCAACAACACGTCATTCCTTGGAAACCCTTTCCTCTGTGGCTT 2035
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1976 AGGGCAATTCTCTTACTTCAACAACACGTCATTCCTTGGAAACCCTTTTCTCTGTGGATT 2035
Query 2036 TTCTTCAAACCCTTGCAACGGTTCCCAAAACCAATCTCAATCTCAGCTACTTAACCAGAA 2095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 TTCTTCAAACCCTTGCAACGGTTCCCAAAACCAATCTCAATCTCAGCTACTTAACCAGAA 2095
Query 2096 CAACACAAAATCCC-ATGGCGAAATCTTTGCAAAATTCAAGCTGTTCTTCGGGTTAGGCC 2154
|||| ||| ||||| | || ||||||| |||||||||||| ||||||||||||||||||
Sbjct 2096 CAACGCAAGATCCCGA-GGTGAAATCTCCGCAAAATTCAAGTTGTTCTTCGGGTTAGGCC 2154
Query 2155 TACTAGGGTTTTTCTTGGTGTTCGTTGTTTTAGCTGTGGTCAAGAATAGGAGAATGAGAA 2214
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2155 TACTAGGGTTTTTCTTGGTGTTCGTCGTTTTAGCTGTGGTCAAGAATAGGAGAATGAGAA 2214
Query 2215 GGCACAACCCGAATTTATGGAAGCTTATAGGGTTTCAGAAGCTCGGATTCAGAAGCGAAC 2274
| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2215 AGAACAACCCGAATTTATGGAAGCTTATAGGGTTTCAGAAGCTCGGTTTCAGAAGCGAAC 2274
Query 2275 ACATATTAGAATGTGTTAAAGGGAACCATGTGATTGGTAAAGGTGGT-GCAGGGATTGTC 2333
||||||||||||||||||||| ||||||||||||||| ||||| || | ||||||||||
Sbjct 2275 ACATATTAGAATGTGTTAAAGAGAACCATGTGATTGGGAAAGGCGGACG-AGGGATTGTC 2333
Query 2334 TACAAAGGCGTAATGCCAAACGGAGAAGAAGTTGCAGTCAAGAAGCTCTTAACCATAACC 2393
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2334 TACAAAGGGGTAATGCCAAACGGAGAAGAAGTTGCAGTCAAGAAGCTCTTAACCATAACC 2393
Query 2394 AAAGGATCATCTCACGACAACGGTTTAGCCGCAGAGATACAGACATTAGGTAGAATCAGA 2453
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2394 AAAGGATCATCTCATGACAACGGTTTAGCCGCAGAGATTCAGACATTAGGTAGAATCAGA 2453
Query 2454 CACAGAAACATAGTGAGATTGCTCGCTTTTTGTTCCAACAAAGACGTGAATCTCCTTGTT 2513
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2454 CACAGAAACATAGTGAGATTGCTCGCTTTTTGTTCAAACAAAGACGTGAATCTCCTTGTT 2513
Query 2514 TACGAGTATATGCCTAATGGTAGCCTCGGAGAAGTCTTGCACGGAAAAGCTGGAGTGTTC 2573
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2514 TACGAGTATATGCCTAATGGTAGCCTCGGAGAAGTCTTGCACGGGAAAGCTGGAGTGTTT 2573
Query 2574 TTGAAATGGGAAACGCGGTTGCAAATAGCTTTGGAAGCGGCTAAGGGGTTGTGTTATCTT 2633
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2574 TTGAAATGGGAAACACGGTTGCAAATAGCGTTGGAAGCGGCTAAGGGGTTGTGTTATCTT 2633
Query 2634 CACCACGATTGCTCACCACTTATAATTCACCGTGATGTTAAGTCAAACAACATCTTGTTG 2693
||||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 2634 CACCATGATTGCTCGCCACTTATAATCCACCGTGATGTGAAGTCAAACAACATCTTGTTG 2693
Query 2694 GGTCCTGAGTTTGAAGCTCATGTTGCTGATTTTGGGCTAGCTAAGTTTATGATGCAAGAC 2753
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2694 GGTCCTGAGTTTGAAGCTCATGTTGCTGATTTTGGGCTTGCTAAGTTTATGATGCAAGAC 2753
Query 2754 AATGGAGCTTCAGAGTGTATGTCCTCAATCGCAGGCTCATATGGCTACATCGCTCCAGAA 2813
||||||||||| ||||| |||||||| ||||| ||||| || ||||||||||||||||||
Sbjct 2754 AATGGAGCTTCCGAGTGCATGTCCTCGATCGCTGGCTCGTACGGCTACATCGCTCCAGAA 2813
Query 2814 TATGCATATACACTGAGAATAGACGAGAAGAGCGATGTGTACAGCTTCGGAGTAGTGTTA 2873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2814 TATGCATATACACTGAGAATAGACGAGAAGAGCGATGTGTACAGCTTCGGAGTAGTGTTA 2873
Query 2874 TTGGAGCTGATTACGGGTCGAAAACCAGTAGATAACTTTGGGGAAGAAGGGATAGACATT 2933
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2874 TTGGAGCTGATTACGGGTCGAAAACCAGTAGATAATTTTGGGGAAGAAGGGATAGACATT 2933
Query 2934 GTACAATGGTCAAAGATTCAGACTAACTGTAACAGACAAGGTGTGGTGAAGATCATTGAC 2993
|| |||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 2934 GTGCAATGGTCAAAGATCCAAACAAACTGTAACAGACAAGGTGTGGTGAAGATCATTGAC 2993
Query 2994 CAGAGATTGAGCAATATTCCATTAGGAGAAGCCATGGAACTGTTTTTTGTCGCAATGCTA 3053
||||||||||||||||||||||||| ||| |||||||||||||| ||||| |||||||||
Sbjct 2994 CAGAGATTGAGCAATATTCCATTAGCAGAGGCCATGGAACTGTTCTTTGTGGCAATGCTA 3053
Query 3054 TGTGTTCAAGAACATAGTGTTGAGAGACCGACCATGAGAGAGGTTGTCCAGATGATTTCT 3113
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 3054 TGTGTGCAAGAACATAGTGTTGAGAGACCGACCATGAGAGAGGTTGTCCAGATGATCTCT 3113
Query 3114 CAGGCTAAACAGCCTAATACTTTCTAAATGCAGTGATGTtatatatataaaa-attaaat 3172
|||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 3114 CAGGCTAAACAGCCTAATACTTTCTAAATGCAGTGATGTTATATATATAAGAGACTAAAT 3173
Query 3173 atatatttttctgttttatgtgtttcatagagttttttttttAGAATTTGGTGAT-ATGA 3231
|||||||||||||||||||||||||||||||||||| ||||||||||||| | || |||
Sbjct 3174 ATATATTTTTCTGTTTTATGTGTTTCATAGAGTTTTGTTTTTAGAATTTG-TAATGATG- 3231
Query 3232 GTTT 3235
||||
Sbjct 3232 GTTT 3235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 162340227548
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5