BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492849
Length=1184
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20190.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1740 0.0
> AT4G20190.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G44660.1);
Has 271 Blast hits to 209 proteins in 52 species: Archae -
0; Bacteria - 15; Metazoa - 63; Fungi - 14; Plants - 48; Viruses
- 3; Other Eukaryotes - 128 (source: NCBI BLink). | chr4:10906508-10907677
REVERSE LENGTH=1170
Length=1170
Score = 1740 bits (942), Expect = 0.0
Identities = 1108/1186 (93%), Gaps = 19/1186 (2%)
Strand=Plus/Plus
Query 1 ATGGCGACAGATGTTCTCAGCTTCAGGGACGATAGTAGTCTCGAGGACTGGCATGACTTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGACAGATGTTCTCAGCTTCAGGGACGATAGTAGTCTCGAGGACTGGCATGACTTT 60
Query 61 GAGGTTCTAAGCCGCGGAGACGAGCCCAAGATTCTGATCAAGAAGACGAGTATGCAATCC 120
||||||||| | | |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 GAGGTTCTAGGTGGTGGAGACGAGCCCAAGATTCTTATCAAGAAGACGAGTATGCAATCC 120
Query 121 CTATCCGAGAGGCGGATATCGGTTGATCCGCAATCGCTATTGTCGAGGAACGGGAGCTTC 180
|||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 121 GTATCCGAGAGGCGGATCTCGGTTGATCCGCAATCGCTATTGTCCAGGAATGGGAGCTTC 180
Query 181 GATATGATAGTCTCGCGTCCGAGAGACATTGATGACATGCCGTTGGATCATCAAATGAAG 240
|||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 181 GATATGATAGTCTCACGTCCGAGAGACATCGATGACTTGCCGTTGGATCATCAAATGAAG 240
Query 241 ACGAAGTTTGTGAGCTGCAGCCTTCCAAACTCAGCAGCCACGTCACCTAGACATAGCTCG 300
||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct 241 ACGAAGTTTGTGAGCTGCAGCCTCCCAAACTCAGCAGCTACGTCACCTAGAAATAGCTCT 300
Query 301 ATTCACAACTGGAAGGACAGAACCACTGAGCAAGTTCTTGACCTAATGCTCGTTCAAGAT 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTCACAACTGGAAGGACAGAACAACTGAGCAAGTTCTTGACCTAATGCTCGTTCAAGAT 360
Query 361 GCAGCCACTGCGTTTCGAAGAAGCAAATCTTGCGGCGAAGGACGTGCTTGTACTCCATCG 420
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 361 GCAGCCACTGCGTTTCGAAGAAGCAAATCTTGCGGCGAAGGACGTGCTTGCACACCATCG 420
Query 421 CTCGATTTCGACATGCTATTGCATAAATCAAGAAATGGACATCATAATCCTAATAATAAT 480
||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| ||
Sbjct 421 CTCGATTTCGACATGCTATTGCATAAATCAAGAAATGCACATCATAATC--AA-AATCAT 477
Query 481 CATCGTCATCATGGCTAT-TCTTCCTCTAACTCCAAGAGTCTATCTCACAAGAGTAGTGG 539
|||||| |||| | |||||||||||||| |||||||| |||||||||||||||||
Sbjct 478 CATCGT------GGCT-TCTCTTCCTCTAACTCTAAGAGTCTCTCTCACAAGAGTAGTGG 530
Query 540 AAACAACTCTTTCTTCTCAAAAACAGAGTCCAACAAAAGCAACAGAAGCAATACCAATAC 599
|||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||
Sbjct 531 AAACAACTCTTTCTTCTCCAAAACAGAGTCTAACAAAAGCAACAGAAGCAATAGCAATAC 590
Query 600 CAATACCGCGAATTCGAAAAGCATCAATTCATTTGAAGACGGATTCAAATGCAGCGCTTT 659
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 591 C------GCGAATTCGAAAAGCATCAATTCATTCGAAGACGGATTCAAATGCAGCGCTTT 644
Query 660 ATGTCTCTACTTACCCGGTTTCAGCAAAGGAAAACCCGTAAGATCATCTCGGAAAGGCGA 719
||||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 645 GTGTCTATACCTACCCGGTTTCAGCAAAGGAAAGCCCGTAAGATCATCTCGAAAAGGTGA 704
Query 720 TTCTTCGTTCACCAGAACCACCACGATGACTTCCTCTCAATCGATGGCAAGAACCGCTTC 779
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 705 TTCTTCGTTCACCAGAACAACCACGATGACTTCCTCTCAATCGATGGCAAGAACCGCTTC 764
Query 780 CATTAGAGACACAAC-GATGCTCTCAGCTCGAGCCTCGTTAGAGCGGTTTGAGTGCGGTT 838
|||||||||||| | | ||||||| ||||||||||| |||||||||| ||||||||||
Sbjct 765 CATTAGAGACACTGCCG-TGCTCTCGGCTCGAGCCTCCCTAGAGCGGTTCGAGTGCGGTT 823
Query 839 CATGGACCTCTTCTGCTATGATTTACGATGACAATGCGGATCTTGGTGGCCATTTCTTCG 898
| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 824 CTTGGACATCTTCGGCTATGATTTACGATGACAATGCCGATCTTGGTGGCCATTTCTTCG 883
Query 899 ACTTGCCTTCCGAATTGATCAAAGGCGGCCCGGGAGGGAACGATCAAGACGATCCTGTTT 958
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 884 ACTTGCCTTCCGAATTGATCAAAGGTGGGCCGGGAGGGAACGATCAAGACGATCCTGTTT 943
Query 959 CAGCTGCTTTCGTGTTTGACAAGGAACCTAATTTGGAGAAAGAAATCAAAGGTGTTTTGA 1018
|||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 944 CAGCTGCTTTCGTGTTCGACAAGGAACCTAATTTGGACAAAGAGATCAAAGGTGTTTTGA 1003
Query 1019 AAACTTCAGGTTCGAAATCGAGAAGATCTATGGAGTCGCCACGTCATGTTCGGTTCTCAA 1078
|||| || ||||||||||| |||||||| |||||||| |||||||| |||||||||||||
Sbjct 1004 AAACGTCTGGTTCGAAATCAAGAAGATCAATGGAGTCACCACGTCACGTTCGGTTCTCAA 1063
Query 1079 CTTCGTCGCCGGTTTCTTATCCGACGTCTCCTACACATTCAATCACGCCACGGTTGCTAC 1138
| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1064 CCTCGTCGCCGGTTTCTTATCCAACGTCTCCGACACATTCAATCACGCCACGGTTGCTAC 1123
Query 1139 AAGCCACCGAAGATTTCAGTAGTTTCTTGGAAGCTCAAGCCGTGTG 1184
|||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1124 AAGCCACCGAGGATTTCAGTAGTTTCTTGGAAGCTCAAGCCGTGTG 1169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58132231110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5