BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492856
Length=1679
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20130.1 | Symbols: PTAC14 | plastid transcriptionally activ... 2414 0.0
> AT4G20130.1 | Symbols: PTAC14 | plastid transcriptionally active
14 | chr4:10878887-10881945 FORWARD LENGTH=1727
Length=1727
Score = 2414 bits (1307), Expect = 0.0
Identities = 1436/1499 (96%), Gaps = 6/1499 (0%)
Strand=Plus/Plus
Query 1 CTAAACCCATTTTCTTCAGTTGAGGAATGGCTTCTTCAGTCTCTCTTCAGTACCTGACCA 60
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2 CTAAACCCATTTTCTTCTGTTGAGGAATGGCTTCTTCAGTCTCTCTTCAGTTCCTGACCA 61
Query 61 ACACCTTTATCTCCAAACCTCAGGGTTTCTGCAACGGAATTGTGTCAGCACCAAGACCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 ACACCTTTATCTCCAAACCTCAGGGTTTCTGCAACGGAATTGTGTCAGCACCAAGACCCA 121
Query 121 GAAGCAATTTCA-TAAGAGACAGACAAAATGGTGTCCGACCCATCAAAGTTACTTCTCTT 179
|||||||||| | |||||||||||||||||||||| ||||||||||||||| | ||| ||
Sbjct 122 GAAGCAATTT-ATTAAGAGACAGACAAAATGGTGTACGACCCATCAAAGTTGCGTCTATT 180
Query 180 GAGACACAACCTTTCCCTCTGTTTCAATCTCCTGCTTCAGAAGAATCTTCCTCGTCCGAG 239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GAGACACAACCTTTCCCTCTGTTTCAATCTCCTGCTTCCGAAGAATCTTCCTCGTCCGAG 240
Query 240 TTGGAGCCAGCAGATCCGGATTTCTACAAAATTGGGTATGTTCGAAGTGTGAGAGCTTAT 299
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 CTGGAGACAGCAGATCCGGATTTCTACAAAATTGGCTATGTTCGAAGTGTGAGAGCTTAT 300
Query 300 GGAGTTGAGTTTAAAGAAGGTCCAGATGGTTTTGGTGTTTATGCTTCTAAGGATATTGAA 359
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 301 GGAGTTGAGTTTAAAGAAGGTCCAGATGGTTTTGGTGTCTATGCTTCTAAGGATATCGAA 360
Query 360 CCTCGCCGTCGAGCTAGAGTGATAATGGAGATTCCTCTTGAATTGATGATAACCATTAGA 419
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 361 CCTCGCCGTCGAGCTAGAGTGATTATGGAGATTCCTCTTGAACTGATGATAACCATTAGA 420
Query 420 CAGAAGCATCCTTGGATGTTTTTCCCTGATATTGTGCCAATTGGTCATCCTATTTTCGAT 479
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 CAGAAGCACCCTTGGATGTTTTTCCCTGATATTGTACCAATTGGTCATCCTATTTTCGAT 480
Query 480 ATCATTAACTCGACTGATCCTGAGATTGATTGGGATATCAGATTGGCGTGTCTTCTGTTA 539
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 ATCATTAACTCGACTGATCCTGAGATTGATTGGGATATCAGATTAGCGTGTCTTCTGTTA 540
Query 540 TTCTCTTTTGATCGGGATGATCACTTCTGGCGACTCTATGGCGATTTCCTTCCTGCTGCT 599
|||||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 541 TTCTCTTTTGATCGAGATGATCACTTCTGGCGGCTCTATGGCGATTTCCTGCCGGCTGCT 600
Query 600 GATGAGTGCAGCAGCCTGCTTCTAGCTACAGAGGAAGACCTTGCGGAGCTTCAAGATCCT 659
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 601 GATGAGTGCAGCAGCTTGCTTTTAGCTACAGAGGAAGACCTTGCGGAGCTTCAAGATCCT 660
Query 660 GATCTTGTTTCAACTATTAGACAACAGCAGAAACGAGTCCTAGAATTTTGGGAAAAGAAT 719
||||||||||||||||| |||||||| ||||||||| ||||||| |||||||||||||||
Sbjct 661 GATCTTGTTTCAACTATCAGACAACAACAGAAACGAATCCTAGATTTTTGGGAAAAGAAT 720
Query 720 TGGCATTCAGGTGTTCCTCTCAAAATCAAAAGGCTTGCCGAGGATCTAGAAAGATTTATA 779
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 721 TGGCATTCAGGTGTTCCTCTCAAAATCAAAAGGCTTGCCGAGGATCCAGAAAGATTCATA 780
Query 780 TGGGCAGTTAGTATCGCACAGACACGATGCATTAGTATGCAAACTAGGATCGGTGCTTTG 839
||||| |||||||| ||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 781 TGGGCGGTTAGTATGGCACAGACACGATGCATCAGTATGCAAACTAGGGTCGGTGCTTTG 840
Query 840 GTTCAGGAATTAAATATGATGATTCCTTATGCTGACATGCTAAACCACTCCTTTGAACCA 899
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 841 GTTCAGGAATTAAATATGATGATTCCTTATGCTGACATGCTAAACCACTCATTTGAACCA 900
Query 900 AACTGTTTCCTACATTGGCGTCCTAAAGATCGCATGCTTGAGGTTATGTCAAATGCTGGT 959
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 901 AACTGTTTCCTACATTGGCGTCCTAAAGATCGCATGCTGGAGGTTATGTCAAATGCTGGT 960
Query 960 CAAGCA-ATTAAGAAAGGCGAAGAAATGACGATAAATTACATGCCAGGCCAGAAAAACAA 1018
|||| | ||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 961 CAAG-ACATTAAGAAAGGCGAAGAGATGACGATTAATTACATGCCAGGCCAGAAAAACAA 1019
Query 1019 CATGCTTATGGAAAGATACGGCTTCTCAACTCCTGTGAATCCGTGGGATGCTATAAAGTT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CATGCTTATGGAAAGATACGGCTTCTCAACTCCTGTGAATCCGTGGGATGCTATAAAGTT 1079
Query 1079 CTCTGGAGCTTCTCGCATCCATTTAAATTCCTTTTTATCGATCTTCAATATTTTTGGTCT 1138
|||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1080 CTCTGGAGATTCTCGCATCCATTTAAATTCCTTTTTATCGGTCTTCAATATTTATGGTCT 1139
Query 1139 TCCTGAAGAATATTACCATGACAGCGAGTTAGCG-GGAGGTGATACTTTTGTTGATGGAG 1197
||||||||||||||||||||||||||||||| || || || |||||||||||||||||||
Sbjct 1140 TCCTGAAGAATATTACCATGACAGCGAGTTATCGAGG-GGCGATACTTTTGTTGATGGAG 1198
Query 1198 CAGTTATAGCTGCAGCAAGAACATTGCCCACTTGGTCAGACATAGATCTTCCTCCAATTC 1257
||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 1199 CAGTTATCGCTGCAGCAAGAACATTACCTACTTGGTCAGACATAGATCTTCCTCCAATAC 1258
Query 1258 CAAGTGCGGAAAGAAAAGCAGTTAAAGAATTGCAAGATGAATGTCGAAAGATGCTTGCGG 1317
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CGAGTGCGGAAAGAAAAGCAGTTAAAGAATTGCAAGATGAATGTCGAAAGATGCTTGCGG 1318
Query 1318 AATATCCCACAACAGCAGACCAAGACCAGAAATTGCTAGATTCAATGTCAGAAGCAAGGA 1377
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1319 AATATCCCACAACAGCAGAGCAAGACCAGAAGTTGCTAGATTCAATGTCAGAAGCAAGGA 1378
Query 1378 CAACGTTTGCGACAGCGGTTAAGTATAGAATGCACAGAAAGATGTTCATTGGAAAGATCA 1437
|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1379 CAACATTTGCAACAGCGGTTAAGTATAGAATGCACAGAAAGATGTTCATCGGAAAAATTA 1438
Query 1438 TCAAGGCACTTGACATCTATCAAGAACGGTTACTATTTTGATTCAAGCGAAAAATAATT 1496
|||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||
Sbjct 1439 TCAAGGCACTTGACATCTATCAAGAACGGTTACTCTATTGATTCAAGCAAAAAATAATT 1497
Score = 272 bits (147), Expect = 7e-72
Identities = 179/193 (93%), Gaps = 8/193 (4%)
Strand=Plus/Plus
Query 1495 TTGAGCTACTTAGAAACTGCACCATGGAATTGAAAGGTTCCTG------TTTTTGTTTAG 1548
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1535 TTGAGCTACTTAGAAACTGCACCATGTAATTGAAAGGTTCCTGTTTTTTTTTTTGTTTAG 1594
Query 1549 TGTAAGCTTATGTATTTGTATGGAACAGTTAGACTAAATGTGTTAGTTTGTTTTAATCGC 1608
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1595 TGTAAGGTTATGTATTTGTATGGAACAGTTAGACTAAGTGTGTTAGTTTGTTTTAATCGC 1654
Query 1609 AATCACAAACCAATCATAACTTCTTCTTTT-TTGGCTG-TTTAATGGGTTTGATTAGCCA 1666
|||||||||| ||||||||| ||||||||| ||||||| ||||||| |||||||||||||
Sbjct 1655 AATCACAAACAAATCATAACCTCTTCTTTTCTTGGCTGCTTTAATGAGTTTGATTAGCCA 1714
Query 1667 ACAAACGCTTTGG 1679
|||||||||||||
Sbjct 1715 ACAAACGCTTTGG 1727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82981500885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5