BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492861
Length=1063
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20095.3 | Symbols: | Protein of unknown function (DUF626) ... 1325 0.0
> AT4G20095.3 | Symbols: | Protein of unknown function (DUF626)
| chr4:10871643-10873615 REVERSE LENGTH=1152
Length=1152
Score = 1325 bits (717), Expect = 0.0
Identities = 965/1079 (89%), Gaps = 39/1079 (4%)
Strand=Plus/Plus
Query 1 AGAATAGCCTTAAAACCCAATCTTCTATTCTTTAAGGTCTAAGAAGC--T-ATCAACCTT 57
||||||||||| ||||||||||||||||||| |||||||||| |||| | ||||| |||
Sbjct 13 AGAATAGCCTTTAAACCCAATCTTCTATTCTCTAAGGTCTAACAAGCTATCATCAAGCTT 72
Query 58 ATTTATTTGTCTTTTTCCCACCGATTACGAAACACTGAATCCATTGTATATTTCTTCTTG 117
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 73 ATTTATTTGTCTTTTTCTCACCGATTACGAAACACTGAATCCATTGTATA-TTCTTCTTG 131
Query 118 CGACCTCCTCAAATTTCATAGGTGAAGAAGTGTTTATGGAATCTTTGCCAAGAAATGGGT 177
||| ||| |||||||||||||||||||||| |||||| || |||||||||||||||||
Sbjct 132 CGATCTCGTCAAATTTCATAGGTGAAGAAGGGTTTAT---ATATTTGCCAAGAAATGGGT 188
Query 178 AACGGAATGTGGAATCAAGAAGCCAGAGACTTGACCGAGGAACCATCGCAGAGTAATGTG 237
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 189 AACGGAATGTGGAAGCAAGAAGCCAGAGACTTGGTCGAGGAACCATCGCAGAGTAATGAG 248
Query 238 AAGCTGGAAGATCAGAGACCACAAGAATCTTCATTCTCCATCCCACGACATGTTTGGGTT 297
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 249 AAGCTGGAAGATCAGAGACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCT 308
Query 298 CATCGGAGAGAAG--AA-TTTGATTCTTATAAATACTACA-AACAACAAAGGGCTGACAT 353
|||||||||||| || ||||||| | | |||||||||| | ||||||||||||||||
Sbjct 309 AATCGGAGAGAAGAAAAGTTTGATTATAACAAATACTACATTA-AACAAAGGGCTGACAT 367
Query 354 TGCAAAATAT---GGACCTCATCCAAA-ACTAGTCCTCTTCGGTAGAGTTGGACTTCATT 409
|||||||||| |||||||||||||| | || |||||||||||||||||||||||||||
Sbjct 368 TGCAAAATATGGAGGACCTCATCCAAATA-TAATCCTCTTCGGTAGAGTTGGACTTCATT 426
Query 410 GCTACAATCTGCAAAAGGGAACAAACTTACAATATT-TGAGTGTACTCAATTTTGACAGA 468
|||||||||||||||| || ||||||||||||| || ||| ||||| ||||||||||
Sbjct 427 GCTACAATCTGCAAAATGGCACAAACTTACAAT-TTCTGACTGTACACAATTTTGAC--- 482
Query 469 TATCAATGGGTAACCTCAATT-TTTAGTTACTGCATAACTTTGGAGGTAATGGATCCAGT 527
|| |||| ||||||| ||| ||| | | | ||||| |||||||| ||||||||||||
Sbjct 483 --TC-ATGGATAACCTCGATTCTTT-CTCATTTCATAAGTTTGGAGGCAATGGATCCAGT 538
Query 528 AGACAATTCGATTTGTGAGTTCGAAGCGCAAGTTAGGCATGCGGTTGAGAATAAAGGTTG 587
|||||||||||| |||||||||||| |||| |||||| |||| |||||||||||| ||
Sbjct 539 AGACAATTCGATCTGTGAGTTCGAAACGCACGTTAGGTATGCCGTTGAGAATAAACACTG 598
Query 588 CTTGAGTGCAATTACAACTGGATGCAGATTAAAGCCTAAAACTCCAGAGGAGGAAGACAA 647
|||||| |||||||||| ||| ||||| ||||||| |||| |||||||||||||||||
Sbjct 599 CTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAGAGGAGGAAGACAC 658
Query 648 ATATTTTTTATGGAACAAAGATCTCGTGGATGATTTCTTCAAAGGTGATATGCCCGAGTG 707
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 659 ATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCTTCAAAGGTGGTATGCCCGAGTG 718
Query 708 GAT-CCGGGAAGATGCACTGACGGGAAGCGATAAGCTGCAATACTATGAGATGAAAGATT 766
||| || |||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 719 GATGCC-GGAAGATGCACTAACGGGAAGGGACAAGCTGCAATACTATGAGATGAAAGATT 777
Query 767 CAGAGTTAGAAGAAGAGAAGGAATGGCTTCATCTATACGCGGAACTCGCTTTGTTCTCCA 826
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 778 CAGAGTTAGAAGAAGAGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCA 837
Query 827 AA-TGGAAATCTAAACTGGATGCGCTGGAG-CATGCAAAGCCTTTTAAGATGAAGAAGAT 884
|| || | | | | ||||||||||| | ||||||||| ||| |||||||||||||
Sbjct 838 AACTGCA--TG----C-GCATGCGCTGGAGTC-TGCAAAGCCATTTGAGATGAAGAAGAT 889
Query 885 TGTTGTAAGAACCAAAGAAAATGCGGAGTCGAAGAAGAAGGTGAAGGCCGAGAATGCAAT 944
||||| |||||||||| ||| | |||||||||||||||||||||||| |||||||||||
Sbjct 890 AGTTGTGAGAACCAAAGCAAACGTGGAGTCGAAGAAGAAGGTGAAGGCGGAGAATGCAAT 949
Query 945 CTTCTACATTAGCTTCAAAACCCGTTGTGGTCGAGACTGCAATTGTATCATAAGGAAAAC 1004
|||||||| |||||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct 950 CTTCTACACTAGCTTCAGAACCCGTTGTGGTCGAGACTGCAATTGTATAATAAGGAGAAC 1009
Query 1005 AACTGATGGAAAGCCAGACCATTTTTCTCTTGAAGTCAAGTGTTTCATGTGAGAGTAGT 1063
||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1010 GACTGATGGAAAGCGAGACCATTTTTCTCTTGAAGTCAAATGTTTCTTGTGAGAGTAGT 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52057965165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5