BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492863
Length=2331
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20080.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 3657 0.0
AT4G13262.1 | Symbols: | pseudogene, Phosphoribosylanthranilat... 739 0.0
> AT4G20080.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) plant phosphoribosyltransferase family protein |
chr4:10865295-10867619 FORWARD LENGTH=2325
Length=2325
Score = 3657 bits (1980), Expect = 0.0
Identities = 2219/2335 (95%), Gaps = 14/2335 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCGAACGGTACCGGAAACGGTAA-CGGTAACAGTAACGGCGATTTCTCGTTGAA 59
||||||| |||||||||||| ||||| || |||| | ||||||||||||| |||||
Sbjct 1 ATGGCGGTGAACGGTACCGGTAACGG-AACCGGT----G--ACGGCGATTTCTCATTGAA 53
Query 60 AGAGACATGTCCAAATATCGGCAATGGTGGTGGTAAAGGCGGCGAGAAGCTGACGTCATC 119
|||||||| ||| ||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 54 AGAGACATCTCCCAATATCGGCAATGGTGGTGTTAACGGCGGCGAGAAGCTGACGTCATC 113
Query 120 GTTCGATCTCGTGGAAGCGATGCATTTCCTCTACGCTAGAATCGTCCGTGCTCGAGCTTT 179
||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 114 GTTCGATCTTGTGGAGGCGATGCATTTCCTCTACGCTAGAATTGTCCGTGCTCGAGCCTT 173
Query 180 ACCGGTCAACGACTCCTTCGTCGCAGTCAAAATCGGAAGCTATAAAGGAAGAACAAAACA 239
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 174 ACCGGTCAACGACTCTTTCGTCGCAGTCAAAATCGGAAGCTACAAAGGAAGAACAAAACA 233
Query 240 GAGCTTAAACTCAAACCCTAACCCTGAGTTTCACGAAACCTTCGCCTTCACGAAAACTCG 299
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 234 GATCTTAAACTCAAACCCTAACCCTGAGTTTCACGAAACCTTCGCATTCACGAAAACTCG 293
Query 300 TCTTCAAGGGAATATCTTAGAAGTGGTCGTACGAAACAGAGATAATGCC-AACGAAGACG 358
|||||||||| ||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 294 TCTTCAAGGGGATATCTTAGAAGTGGTCGTGCGAAACAGAGATAA-CCCAAACGAAGACG 352
Query 359 ATATTGTCGGGAAATGTAGGTTCGATGTGGCGGAGATTCCGACACGTGTTCCTCCTGATA 418
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 353 ATATTGTCGGGAAATGTAAGTTCGATGTTGCGGAGATTCCGACACGTGTTCCTCCTGATA 412
Query 419 GTCCGTTGGCTCCTCAATGGTATAGATTGGAAGATAGAAACGGTGTCAAGATCGGAGGAG 478
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 413 GTCCATTGGCTCCTCAATGGTATAGATTGGAAGATAGAAACGGTGTCAAGATCGGTGGAG 472
Query 479 AGATTATGTTATCTGTTTGGATTGGGACACAAGCTGATGAAGTTTTCTCTGAGGCTTGGC 538
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 473 AGATTATGGTATCTGTTTGGATTGGGACACAAGCTGATGAAGTTTTCTCGGAGGCTTGGC 532
Query 539 ATTCGGATTCGGCGACTGTCACCGGAGAAAACGTGGTGAACACGCGATCTAAAGTTTATC 598
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 533 ATTCGGATTCGGCGAGTGTTACCGGAGAAAACGTGGTGAACACGCGATCTAAAGTTTATC 592
Query 599 TTTCACCGAGGCTTTGGTACTTGCGAGTTAATGTAATTGAAGCTCAGGATTTGGTTCCGT 658
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 593 TTTCACCGAGGCTTTGGTACTTGCGAGTTAATGTAATCGAAGCTCAGGATTTGGTTCTGT 652
Query 659 TGCATCAGAACCGGATCAATCCAGAGATTCTGATTAAAGGGTTTCTTGGAAACGTTGTTG 718
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TGCACCCGAACCGGATCAATCCAGAGATTCTGATTAAAGGGTTTCTTGGAAACGTTGTTG 712
Query 719 TGAGGAGTCGGATTTCGCAGACGAGGAGTGTGAATCCTGTTTGGAATGAGGATATGATGT 778
|||||||||||||||||||||||| |||||||| |||||| ||||| |||||||||||||
Sbjct 713 TGAGGAGTCGGATTTCGCAGACGAAGAGTGTGAGTCCTGTGTGGAACGAGGATATGATGT 772
Query 779 TTGTAGCGGTTGAGCCGTTTGAAGATAGTTTGATACTTAGCGTTGAAGACAAGGTAGGGC 838
|||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||
Sbjct 773 TTGTAGCGGTTGAGCCGTTTGATGACAGTTTGATACTTAGCGTGGAAGATAAGGTAGGGC 832
Query 839 CGAGAGAAGAGTGTTTAGGAAGGTGTGAGATAAAGCTATCTCAGGTTGAGAGAAGGGTGA 898
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 833 CGAGAGAAGAGTGTTTAGGAAGGTGTGAGATAAAGTTATCTCAGGTTGAGAGAAGGGTGC 892
Query 899 TTCCTGGTCCGGTCCCGGCATTGTGGTACAACGTGGAACACATTGGTGAGACTGGAGAAA 958
||||||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||
Sbjct 893 TTCCTGGTCCGGTGCCGTCATTGTGGTACAACGTTGAACACATTGGTGAGACCGGAGAAG 952
Query 959 TGAGGAGATTTGCCGGGAGGATTCACTTGCGGGTTTCTTTAGACGGAGGTTATCACGTTC 1018
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 953 GGAGGAGATTTGCTGGGAGGATTCATTTGCGGGTTTCTTTAGACGGAGGTTATCACGTTC 1012
Query 1019 TAGATGAATCGATTCAGTATAGCAGCGATTACAGAGCTTCTGCTAAACTTCTATGGACTC 1078
| ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1013 TTGATGAGTCGATTCAGTATAGCAGCGATTACAGAGCTTCAGCTAAGCTTCTATGGACTC 1072
Query 1079 CAGCTATTGGTGTGTTGGAGCTAGGAGTGTTAAATGCTACGGGTTTAGTGCCGATGAAGT 1138
|| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1073 CACCTATTGGTGTGTTGGAGCTAGGAGTTTTAAATGCTACGGGTTTAATGCCGATGAAGT 1132
Query 1139 CAAGAGATGGTCGAGGAACTACCGATGCGTATTGTGTGGCTAAATACGGAACAAAATGGG 1198
|||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1133 CAAGAGGTGGCCGAGGAACTACCGATGCGTATTGTGTGGCGAAATACGGAACAAAATGGG 1192
Query 1199 TGAGAACGAGGACGATTGTGGATACTTTCGATCCAAAGTGGAACGAGCAGTATACTTGGG 1258
||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1193 TGAGAACGAGGACCATTGTGGACACTTTCGATCCAAAGTGGAATGAGCAGTATACTTGGG 1252
Query 1259 AAGTCTATGATCCTTACACAGTAATAACAATCGGCGTCTTCGATAATCTGAATTTGTTTG 1318
||||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||
Sbjct 1253 AAGTCTATGATCCTTACACGGTGATAACAATCGGTGTCTTCGATAATCTGAAATTGTTTG 1312
Query 1319 GTGCTGGTAACCAAAACCGCTTGATCAACGATTCAAGGATTGGGAAGATTAGGATACGTT 1378
|||| |||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1313 GTGCGGGTAACGAAAACCGTTTGATCAACGATTCAAGGATTGGGAAGATCAGGATACGTT 1372
Query 1379 TATCGACCCTTGTAACCTCGAAGATCTACACACATTCTTACCCTTTAGTCGTTTTAAAAC 1438
|||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||
Sbjct 1373 TATCGACCCTTGTAACCTCGAAGATCTACACACATTCTTATCCTTTAATGGTTTTAAAAC 1432
Query 1439 CAGACGGGGTTAAGAAAATGGGTGAGATTCAGCTGGCGGTTAGGTTCACCGCGACATCTA 1498
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1433 CAGACGGGGTTAAAAAAATGGGTGAGATTCAGCTCGCGGTTAGGTTCACCGCGACATCTA 1492
Query 1499 TGATCGATATGCTTCAGAAATACTCAGAGCCGTTGCTTCCAGAAATGCATTACATATCTC 1558
|||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1493 TGATGGATATGCTTCAGAAGTACACAGAGCCGTTGCTTCCAGAAATGCATTACATATCTC 1552
Query 1559 CATTGTCTATTTACCAATTAGACAGCCTTAGGCACCAAGCGACTCACATTCTCTGCATAA 1618
|||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 1553 CATTGTCTATATACCAATTAGACAGTCTTAGGCACCAAGCGACCCACATTCTCTGCATCA 1612
Query 1619 AGC-TAGGGCGCAATGAGCCAGCACTTGGAAGAGATGTTGTAGAGTATATGCTCGATGTG 1677
| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 A-CTTAGGGCGCAACGAGCCAGCACTTGGAAGAGATGTTGTAGAGTATATGCTCGATGTG 1671
Query 1678 GGATCAAACATTTGGAGTCTAAGAAGAGGAAGAGCAAATTTTGAACGTCTTGTCTCGTTT 1737
||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct 1672 GGATCAAACATTTGGAGTCTACGAAGAGGAAGAGCGAATTTCGAACGTCTTGTCTCGTTT 1731
Query 1738 TTCGATGGCTGGATGGATGCTTGGAGATGGTTTGATGAGATTTGCAAATGGAAAAGTCCC 1797
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1732 TTCGATGGCTGGATCGATGCTTGGAAATGGTTTGATGAGATTTGCAAATGGAAAAGTCCC 1791
Query 1798 GTGACGACGGTTTTAATCCATATTGTCTTCTTGTTCATTGTTTTCCTCCCCAAGTACTGT 1857
|||||| |||||||| |||||||||||| ||||||| ||||||| ||||| |||||||||
Sbjct 1792 GTGACGTCGGTTTTAGTCCATATTGTCTGCTTGTTCGTTGTTTTTCTCCCTAAGTACTGT 1851
Query 1858 GTTTTCTCGATGCTACTGTACTGCTTCGTGTTTGGGTTATACAGGTTCGGTTTGAGACCG 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 GTTTTCTCGATGCTACTGTACTGCTTCGTGTTTGGGTTATACAGGTTCGGTTTGAGACCG 1911
Query 1918 AGACATCCTCCACACATGGATATAAAGCTGTCTAAAGCTGATTCAGCTTTGCCCGATGAG 1977
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1912 AGACATCCTCCACATATGGATATAAAGCTGTCTAAAGCTGATTCAGCTTTGCCCGATGAG 1971
Query 1978 CTAGACGAGGAGTTTGATGTGTTTCCAAGCGCGAAATCCGGTGATATACTGAAGAA-AAG 2036
|||||||||||||||||||||||||||||| |||||||||||||| ||||||| || |||
Sbjct 1972 CTAGACGAGGAGTTTGATGTGTTTCCAAGCTCGAAATCCGGTGATGTACTGAA-AAGAAG 2030
Query 2037 GTATGATAGGTTGCGTGGGATCGCAGGAAGGATGATGATTGTGTTGGGAGATTTGGCTAC 2096
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2031 GTATGATAGGTTGCGTGGGATCGCAGGGAGGATGATGATTGTGTTGGGAGATTTGGCTAC 2090
Query 2097 ACAAGGAGAAAGAGTGAAAAGTTTGTTGAGTTGGAGAGATCCAAGAGCAACGTCTCTGTT 2156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2091 ACAAGGAGAAAGAGTGAAAAGTTTGTTGAGTTGGAGAGATCCAAGAGCAACGTCTCTGTT 2150
Query 2157 CTTGGCGTTCTGTTTTGTTAGCTGTGGAGTGATTTGTTTCGTCTCCATGAAGTTACTGCT 2216
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2151 CTTGACGTTCTGTTTTGTTAGCTGTGGAGTGATTTGTTTCGTCTCCATGAAGTTACTGCT 2210
Query 2217 CACGGTTCTTGCGTTCTACGTCATGAGACATCCTAGGGTTAGGGTTTTCGATATACCTTC 2276
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2211 CACATTTCTTGCGTTCTACGTCATGAGACATCCTAGGGTTAGAGTTTTCGATATACCTTC 2270
Query 2277 TATTCCTCAGAATTTTTTCAGGAGATTACCATCAAGAGCTGATAGCATCTTGTGA 2331
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2271 TATTCCTCAGAATTTCTTCAGGAGATTACCATCAAGAGCTGATAGCATCTTGTGA 2325
> AT4G13262.1 | Symbols: | pseudogene, Phosphoribosylanthranilate
transferase, similar to Phosphoribosylanthranilate transferase;
blastp match of 28% identity and 1.1e-27 P-value to
GP|1396054|dbj|BAA13032.1||D86180 phosphoribosylanthranilate
transferase {Pisum sativum} | chr4:7709660-7710727 REVERSE
LENGTH=1068
Length=1068
Score = 739 bits (400), Expect = 0.0
Identities = 746/904 (83%), Gaps = 59/904 (7%)
Strand=Plus/Plus
Query 1348 GATTCAAGGATTGGGAAGATTAGGATACGTTTATCGACCCTTGTAACCTCGAAGATCTAC 1407
|||||||||| ||| |||| ||||||||||||||||||||| ||||||| ||||| |||
Sbjct 103 GATTCAAGGACGGGGTAGATCAGGATACGTTTATCGACCCTTATAACCTCAAAGATTTAC 162
Query 1408 ACACATTCTTACCCTTTAGTCGTTTTAAAACCAGACGGGGTTAAGAAAATGGGTGAGATT 1467
||||||||||| |||||||| |||||||||||| || ||||||||||||||| || ||||
Sbjct 163 ACACATTCTTAACCTTTAGTGGTTTTAAAACCATACAGGGTTAAGAAAATGGATGTGATT 222
Query 1468 CAGCTGGCGGTTAGGTTCACCGCGACATCTATGATCGATATGCTTCAGAAATAC-TCAGA 1526
||||| ||||||||||| | ||| ||||| ||||| | ||||||||||||||| | |||
Sbjct 223 CAGCTAGCGGTTAGGTTTA-CGCTACATCCATGATAAAGATGCTTCAGAAATACAT-AGA 280
Query 1527 GCCGTTGCTTCCAG-AAATGCATTACATATCTCCA-TTGTCTATTTACCAATTAGACAGC 1584
|| |||||||| | |||| | ||||| | | || || | |||||||||||||| ||||
Sbjct 281 TCCATTGCTTCC-GCAAATACGCTACAT-TTTGCACTT-TATATTTACCAATTAGTCAGC 337
Query 1585 CTTAG-GCACCAAGCGACTCACATTCTCTGCATAAAGCTAGGGCGCAATGAGCCAGCACT 1643
||||| | ||||||| ||||||||||||||| | | | | ||||||||||
Sbjct 338 CTTAGAG-ACCAAGCAACTCACATTCTCTGC----A---A-----C-A--AGCCAGCACT 381
Query 1644 TGGAAGAGATGTTGTAGAGTATATGCTCG----ATGTGGGATCAAACATTTGGAGTCTAA 1699
|||| |||||||| | ||| ||||||| |||||||||||||||||||||||||||
Sbjct 382 CAGAAGGGATGTTGTGGTGTAGATGCTCGATATATGTGGGATCAAACATTTGGAGTCTAA 441
Query 1700 GAAGAGGAAGAGCAAATTTTGAACGTCTTGTCTCGTTTTTCGATGGCTGGATGGATGCTT 1759
|||||||||| | || |||||| ||||| |||||||||| ||||||||| | || |||
Sbjct 442 GAAGAGGAAGCGTGAACTTTGAAAGTCTTATCTCGTTTTTTGATGGCTGGGTTAATACTT 501
Query 1760 GGAGATGGT---TTGATGAGATTTGCAAATGGAAAAGTCC-CGTGACGACGGTTTTAATC 1815
||| ||||| || || || ||| |||||||| | | || | |||||| ||||| |||
Sbjct 502 GGATATGGTACGTTCATAAGCTTT-CAAATGGAGA-G-CCTCATGACGATAGTTTTGATC 558
Query 1816 CATATTGTCTTCTTGTTCATTGTTTTCCTCCC-CAAGTACTGT-GTTTTCTCGATGCTAC 1873
||||| || |||||||| ||||||| |||| || ||||| | ||||||||| ||||
Sbjct 559 CATATCGTGATCTTGTTCGTTGTTTTTCTCCATCA-GTACT-TCGTTTTCTCGTTGCTT- 615
Query 1874 TG-TACTGCTTCGTGTTTGGGTTATACA--GGTTCGGTTTGAGACCGAGACATCCTCCAC 1930
|| ||| ||||| | ||| ||||||| | |||| || |||| |||||||||||||||||
Sbjct 616 TGATACCGCTTCTTATTTAGGTTATATATAGGTTTGGCTTGAAACCGAGACATCCTCCAC 675
Query 1931 ACATGGATATAAAGCTGTCTAAAGCTGATTCAGCTTTGCCCGATGAGCTAGACGAGGAGT 1990
|||||||||||||||||||||||||||||||| |||||||| || | ||||||||||
Sbjct 676 ACATGGATATAAAGCTGTCTAAAGCTGATTCACCTTTGCCCAAT----T-GACGAGGAGT 730
Query 1991 TTGATGTGTTTCCAAGCGCGAAATCCGGTGATATACTGAAGAAAAGGTATGATAGGTTGC 2050
|||||| |||||||||||| ||||| | |||| | || ||||||||||||||||||||||
Sbjct 731 TTGATGCGTTTCCAAGCGCAAAATCTGATGATGT-CTAAAGAAAAGGTATGATAGGTTGC 789
Query 2051 GTGGGATCGCAGGAAGGATGATGAT--T-GTGTTGGGAGATTTGGCTACACAAGGAGAA- 2106
|||| || |||| |||||| | | | |||| ||||||| |||||||||||||| ||
Sbjct 790 TTGGGGTCTCAGGGAGGATGGTCCTCATCGTGTCGGGAGATGTGGCTACACAAGGA-AAG 848
Query 2107 AGAGTGAAAAGTTTGTTGAGTTGGAGAGATCCAAGAGCAACGTCTCTGTTCTTGGCGTTC 2166
| | ||||||||||||||| ||||||| ||| ||||||||||||||||||||| || |||
Sbjct 849 ATATTGAAAAGTTTGTTGAATTGGAGAAATC-AAGAGCAACGTCTCTGTTCTTAGCCTTC 907
Query 2167 TGTTTTGTTAGCTGTGGAGT---GATTTGTTTCGTCTCCATGAAGTTACTGCTCACGGTT 2223
|||||| |||| |||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct 908 TGTTTTATTAGTTGTGGAGTACTGATTTGTTTCGTCTCCATGAAGTTACTGCTCATGTTT 967
Query 2224 CTTG 2227
||||
Sbjct 968 CTTG 971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115712256225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5